Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495177.1

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Forward (+)

78 .. 1209

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgctgatggctcgtctgtacagtggtagtcttggtatgattgcgttgagaaatgcatatcatggtggaagttccaatacgattggtttgacagcgctgaacacatggaagtatccaattccacagggtgaaattcatcacgttgtaaatccagatccataccgtggagtctttggctctgatgccaaaagttatgctgaagatgtgcaagatcacattgattatgggacttctggaaaagttgctggattcatatcggaaacaattcagggagttggaggagcagttgaattggcccctggttatttgaaaatggtttatgacattgttcgaaaggctggtggtgtctgcatcgctgatgaagtacaaactgggtttggccgcactggaagtcactattggggctttgaaactcagggtgtcattcctgatattgtaactatggcaaagggcattggaaatggattgcccttgggagcagtggtgactacaccagaaatcgcaagtgtactagcacaaaagacacatttcaacacatatggtggaaaccctgtatgctctgcgggagggcttgcagttcttaaagttattgatgaggagaagcgtcaaactcactccgctgatgttggctctcacttgcttggtcgtttgagagatcttcagcagagacacgacagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

226

Amino Acids

24.01

Weight (kDa)

6.29

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	3 cut(s)	382, 563, 618
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	2 cut(s)	219, 644
AdeI	CACNNNGTG	1 cut(s)	128
AfaI	GTAC	3 cut(s)	20, 366, 510
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	290, 310, 410, 532
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	2 cut(s)	294, 379
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	140, 496
AsuII	TTCGAA	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	172, 360
BmuI	ACTGGG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	163, 298, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 300, 468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	376, 391
Bse8I	GATNNNNATC	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	163, 298, 471
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	2 cut(s)	376, 391
BseRI	GAGGAG	2 cut(s)	294, 611
BshFI	GGCC	2 cut(s)	296, 381
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	296, 381
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	154, 211, 655
BspACI	CCGC	3 cut(s)	382, 563, 618
BspANI	GGCC	2 cut(s)	296, 381
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	376, 391
BssECI	CCNNGG	3 cut(s)	163, 298, 471
BssMI	GATC	3 cut(s)	154, 211, 655
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	23, 164, 677
BstAUI	TGTACA	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	157, 214, 658
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	3 cut(s)	154, 211, 655
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstX2I	RGATCY	2 cut(s)	154, 655
BstYI	RGATCY	2 cut(s)	154, 655
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	296, 381
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	28, 384, 486
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	19, 365, 509
CviAII	CATG	2 cut(s)	62, 105
CviJI	RGCY	8 cut(s)	11, 177, 296, 338, 381, 405, 571, 630
CviKI_1	RGCY	8 cut(s)	11, 177, 296, 338, 381, 405, 571, 630
CviQI	GTAC	3 cut(s)	19, 365, 509
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	156, 213, 657
DpnII	GATC	3 cut(s)	154, 211, 655
DraIII	CACNNNGTG	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	219, 644
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	65, 108
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	61, 104
FauI	CCCGC	1 cut(s)	556
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	296, 381
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	65, 108
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	168, 249
HphI	GGTGA	2 cut(s)	140, 496
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	2 cut(s)	181, 259
Hpy188III	TCNNGA	3 cut(s)	152, 234, 428
Hpy8I	GTNNAC	1 cut(s)	509
HpyCH4III	ACNGT	3 cut(s)	23, 164, 677
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	56, 208, 351, 575
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	65, 108
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	154, 211, 655
LmnI	GCTCC	2 cut(s)	281, 476
LweI	GCATC	2 cut(s)	172, 360
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	392, 436, 484
MalI	GATC	3 cut(s)	156, 213, 657
MboI	GATC	3 cut(s)	154, 211, 655
MboII	GAAGA	2 cut(s)	212, 650
MflI	RGATCY	2 cut(s)	154, 655
MluCI	AATT	4 cut(s)	117, 132, 264, 290
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	272, 560, 589
Mph1103I	ATGCAT	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	3 cut(s)	154, 211, 655
NlaIII	CATG	2 cut(s)	65, 108
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	392, 484
NsiI	ATGCAT	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	154, 655
RsaI	GTAC	3 cut(s)	20, 366, 510
RsaNI	GTAC	3 cut(s)	19, 365, 509
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	3 cut(s)	154, 211, 655
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	172, 360
SfuI	TTCGAA	1 cut(s)	331
Sse9I	AATT	4 cut(s)	117, 132, 264, 290
SsiI	CCGC	3 cut(s)	382, 563, 618
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	23, 164, 677
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	331
TasI	AATT	4 cut(s)	117, 132, 264, 290
TatI	WGTACW	3 cut(s)	18, 364, 508
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	3 cut(s)	28, 391, 486
TseFI	GTSAC	2 cut(s)	392, 484
Tsp45I	GTSAC	2 cut(s)	392, 484
TspDTI	ATGAA	3 cut(s)	125, 241, 375
TspRI	CASTG	3 cut(s)	28, 391, 486
Van91I	CCANNNNNTGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.