Rroxscaffold_1G00030820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014814
Physical Location & Seq
Forward (+)
41428767 .. 41437275
8509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030820.1

Sequence Viewer

Length: 561 bp
ATGTCAACATGCAACGAGTTGTTTCAATCTATACAACCTAAAATTGTGCCAACACTAAATATCGAAATGAATTCGAAGTACAAGTCCGAAGAGATCGATGGGGTGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGATTCCCGTGAGTGGAATGATTTGTTGGCCACCGACAAGGACTGCAGTCTCTCAAGCAAGACCGGTCTCGCTTTCTATCTCATCTCTCTCTTTTTCTTCTTCTTCTTCTTTCTCCTCCTCCTCGCTATAGCTTCCATTCTGCAACAATGGCAGCGTGTTGCTGCTGTAACACCACAGACCTCTCTCTTTCTCGGTTCGGCAATCCGGTGCGGCTGTCCGGTTCGGCAATCCGGTGCGGTACCGTCCGGTCGGCAATCCGGTTCGGCAGTCCGGTCGGCAATCCGGTTCGGCGGTCCGTTCGGCGATACCGGTTCGAGCCCCTCCCCGCCTCTCTCACTCCCGACCAGGCACCGTTCAGTTCTTGTTCAAAGTTTCCGTTCCCGCCTCCAATGGAGACTTCCGGAGGTATGTTCACACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

9.78

Isoelectric Point (pI)

68.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 2 cut(s) 376, 486
AccIII TCCGGA 1 cut(s) 538
AciI CCGC 5 cut(s) 348, 374, 429, 464, 520
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 2 cut(s) 80, 378
AfiI CCNNNNNNNGG 1 cut(s) 150
AgeI ACCGGT 3 cut(s) 200, 446, 555
AgsI TTSAA 2 cut(s) 26, 506
AjnI CCWGG 1 cut(s) 482
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 519, 551
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 3 cut(s) 191, 209, 526
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 289, 299
ApoI RAATTY 1 cut(s) 70
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AsiGI ACCGGT 3 cut(s) 200, 446, 555
Asp718I GGTACC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 431
AsuII TTCGAA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 2 cut(s) 376, 486
BanII GRGCYC 1 cut(s) 458
BauI CACGAG 1 cut(s) 135
BbvI GCAGC 2 cut(s) 286, 301
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciT130I CCWGG 1 cut(s) 484
BcoDI GTCTC 3 cut(s) 191, 209, 526
BfmI CTRYAG 2 cut(s) 181, 264
BisI GCNGC 3 cut(s) 290, 300, 349
BlsI GCNGC 3 cut(s) 291, 301, 350
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 378, 488
BmrFI CCNGG 1 cut(s) 484
BoxI GACNNNNGTC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 3 cut(s) 200, 446, 555
BseAI TCCGGA 1 cut(s) 538
BseBI CCWGG 1 cut(s) 484
BseCI ATCGAT 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 150
BseRI GAGGAG 3 cut(s) 242, 245, 248
BseXI GCAGC 2 cut(s) 286, 301
Bsh1285I CGRYCG 2 cut(s) 388, 413
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 2 cut(s) 376, 486
BshTI ACCGGT 3 cut(s) 200, 446, 555
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 2 cut(s) 388, 413
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 191, 209, 526
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 458
Bsp13I TCCGGA 1 cut(s) 538
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 5 cut(s) 348, 374, 429, 464, 520
BspANI GGCC 1 cut(s) 167
BspDI ATCGAT 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 378, 488
BspMAI CTGCAG 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 2 cut(s) 376, 486
BspTNI GGTCTC 1 cut(s) 209
BsrFI RCCGGY 3 cut(s) 200, 446, 555
BssAI RCCGGY 3 cut(s) 200, 446, 555
BssMI GATC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 2 cut(s) 381, 491
Bst6I CTCTTC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 74
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 3 cut(s) 191, 209, 526
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 2 cut(s) 388, 413
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 12
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 2 cut(s) 181, 264
BstV1I GCAGC 2 cut(s) 286, 301
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 96
Cfr10I RCCGGY 3 cut(s) 200, 446, 555
Cfr13I GGNCC 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 96
CpoI CGGWCCG 1 cut(s) 431
Csp6I GTAC 2 cut(s) 79, 377
CspAI ACCGGT 3 cut(s) 200, 446, 555
CspI CGGWCCG 1 cut(s) 431
CviAII CATG 1 cut(s) 9
CviJI RGCY 4 cut(s) 167, 269, 351, 456
CviKI_1 RGCY 4 cut(s) 167, 269, 351, 456
CviQI GTAC 2 cut(s) 79, 377
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 458
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 1 cut(s) 12
FaiI YATR 4 cut(s) 10, 32, 266, 547
FatI CATG 1 cut(s) 8
FauI CCCGC 2 cut(s) 471, 527
Fnu4HI GCNGC 3 cut(s) 290, 300, 349
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 290, 300, 349
GluI GCNGC 3 cut(s) 290, 300, 349
HaeIII GGCC 1 cut(s) 167
Hin1II CATG 1 cut(s) 12
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 6, 551
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 137, 478, 539
Hpy8I GTNNAC 2 cut(s) 6, 551
HpyCH4III ACNGT 2 cut(s) 381, 491
HpyCH4V TGCA 3 cut(s) 12, 183, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
Hsp92II CATG 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 538
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 286, 301
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 5 cut(s) 101, 226, 229, 232, 235
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 42, 70
MluNI TGGCCA 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 167
MroI TCCGGA 1 cut(s) 538
MscI TGGCCA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 556
Msp20I TGGCCA 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 2 cut(s) 378, 488
NspI RCATGY 1 cut(s) 12
NspV TTCGAA 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PfeI GAWTC 1 cut(s) 140
PinAI ACCGGT 3 cut(s) 200, 446, 555
PkrI GCNGC 3 cut(s) 291, 301, 350
PshAI GACNNNNGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 378, 488
PspPI GGNCC 1 cut(s) 431
PstI CTGCAG 1 cut(s) 185
RsaI GTAC 2 cut(s) 80, 378
RsaNI GTAC 2 cut(s) 79, 377
RseI CAYNNNNRTG 1 cut(s) 556
Rsr2I CGGWCCG 1 cut(s) 431
RsrII CGGWCCG 1 cut(s) 431
SatI GCNGC 3 cut(s) 290, 300, 349
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 1 cut(s) 458
SetI ASST 4 cut(s) 40, 271, 320, 546
SfcI CTRYAG 2 cut(s) 181, 264
SfuI TTCGAA 1 cut(s) 74
SgrAI CRCCGGYG 1 cut(s) 555
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 42, 70
SsiI CCGC 5 cut(s) 348, 374, 429, 464, 520
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 381, 491
TaqI TCGA 4 cut(s) 63, 74, 96, 452
TasI AATT 2 cut(s) 42, 70
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 2 cut(s) 289, 299
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 2 cut(s) 423, 503
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.