Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Reverse (-)

1452342 .. 1454565

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGAAGAGAAAGAAAACGAGAAACGTGTTGCTGCTGTAACACCACGGACCTCCCTCTTTCTCGGTCGGCAATCCGGTTACGCAATCCGGTTCGGTAGTCCGGTCGGCACTCCGGTTCGCAATCCGGTGCGCAGCGGTCCGGTTCGGCAATACCGGTTCGAGCCCTCCCCGCCTCTCTCACTCCCCGACCGGACGTTGGCGGCCTTTCGCAAGATCCCCAAAGCTGCGGGGAATGCAAAAGAAAGGTTATGGACGTCCCTGTGTCTTCTTTGTCATCTGAGAAAAAGTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

10.65

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
Acc16I	TGCGCA	1 cut(s)	134
AciI	CCGC	4 cut(s)	138, 173, 203, 230
AclWI	GGATC	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	156
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	35, 135, 227
AsiGI	ACCGGT	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	51, 140
AvaII	GGWCC	2 cut(s)	51, 140
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	22, 147, 214
BisI	GCNGC	4 cut(s)	36, 136, 204, 228
BlsI	GCNGC	4 cut(s)	37, 137, 205, 229
Bme18I	GGWCC	2 cut(s)	51, 140
BmgT120I	GGNCC	2 cut(s)	51, 140
BpiI	GAAGAC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	8 cut(s)	77, 90, 103, 115, 127, 142, 156, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	22, 147, 214
Bsh1285I	CGRYCG	3 cut(s)	70, 108, 193
BshFI	GGCC	1 cut(s)	206
BshTI	ACCGGT	1 cut(s)	156
BsiEI	CGRYCG	3 cut(s)	70, 108, 193
BsiSI	CCGG	8 cut(s)	78, 91, 104, 116, 128, 143, 157, 193
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	4 cut(s)	138, 173, 203, 230
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	296
BspPI	GGATC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	3 cut(s)	70, 108, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 236
BstV1I	GCAGC	3 cut(s)	22, 147, 214
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	47
CciI	TCATGA	1 cut(s)	296
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	51, 140
CpoI	CGGWCCG	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	156
CspI	CGGWCCG	1 cut(s)	140
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	3 cut(s)	166, 206, 227
CviKI_1	RGCY	3 cut(s)	166, 206, 227
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	51, 140
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	300
FaiI	YATR	2 cut(s)	253, 298
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	296
FauI	CCCGC	2 cut(s)	180, 223
Fnu4HI	GCNGC	4 cut(s)	36, 136, 204, 228
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	36, 136, 204, 228
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	36, 136, 204, 228
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	8 cut(s)	78, 91, 104, 116, 128, 143, 157, 193
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HpaII	CCGG	8 cut(s)	78, 91, 104, 116, 128, 143, 157, 193
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	297
HpyCH4IV	ACGT	3 cut(s)	28, 197, 257
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 236
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	3 cut(s)	28, 197, 257
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	91, 104, 117, 129, 141, 156, 170, 206, 275
Lsp1109I	GCAGC	3 cut(s)	22, 147, 214
MaeII	ACGT	3 cut(s)	28, 197, 257
MaeIII	GTNAC	2 cut(s)	40, 80
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	4 cut(s)	17, 20, 260, 285
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	64, 68, 178, 186
MroXI	GAANNNNTTC	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	8 cut(s)	78, 91, 104, 116, 128, 143, 157, 193
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	172, 236
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	300
NsbI	TGCGCA	1 cut(s)	134
PagI	TCATGA	1 cut(s)	296
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	37, 137, 205, 229
PspPI	GGNCC	2 cut(s)	51, 140
PsuI	RGATCY	1 cut(s)	216
Rsr2I	CGGWCCG	1 cut(s)	140
RsrII	CGGWCCG	1 cut(s)	140
SatI	GCNGC	4 cut(s)	36, 136, 204, 228
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	51, 140
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	31, 56, 200, 229, 251, 260
SinI	GGWCC	2 cut(s)	51, 140
SsiI	CCGC	4 cut(s)	138, 173, 203, 230
TaiI	ACGT	3 cut(s)	31, 200, 260
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	56
TauI	GCSGC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	35, 135, 227
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	51, 140
XmnI	GAANNNNTTC	1 cut(s)	289
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.