Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Forward (+)

15964689 .. 15967167

Gene Structure 2479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCGATGGCTCGTACGTACGGTGGTAGTATTGGTATGATTGCGTTGAGAAATGCATATCATGGTGGAAGTTCCAATACGATTGGTTTGACAGCGCTGAACACATGGAATTATGCTAAAGATGTGCAAGATCACATTGATTATGGGACTTCGGAAAAGTTGCTGGATTCATATCGGAAACAATTCGGGGGTTGGAGGAGCGTTGAATTGGCCCCTGGTTATTTGAAAATGGTTTATGACATTGTTCGAAAGGCTGGTGGTCTCGCATCGCCGATGAAGTACAAACGGGGTTTGGCCGCACCGGAAGTCACTATTGGGGCTTTGAAACTCAGGGTGTCATTCACGATATTTTTGGGAATTGAAGTGTATAGAATTATAAAATTGAGAAGTTTGGAGAAGTTGGAGGTTGTGGAGTTGGTTTTGATTGAAGTTGATTTTGGGGTTAAATTGGTGAGTGAGAAAGTAGGGTTCGAGGACGGAGATGTCCGAAGTTCGACGGTTAAGGATAACCGTAGTGATTGTGTTTTGAGGACGGAGATGTCCGAAGTTCAACGGTTAAAGATAACCGAAGACCCAAGTGGGGTGTTGGGATTGAGGATTGTGAATGTGTTTTCTCGTGATTCCCGTGAGTGGAATGACGTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

216

Amino Acids

24.11

Weight (kDa)

8.87

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AasI	GACNNNNNNGTC	2 cut(s)	482, 538
AatII	GACGTC	1 cut(s)	642
AciI	CCGC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	3 cut(s)	16, 20, 281
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	580, 630
AgsI	TTSAA	6 cut(s)	206, 226, 325, 362, 428, 551
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 420, 452
Alw26I	GTCTC	2 cut(s)	266, 646
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	2 cut(s)	210, 294
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	576
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	266, 646
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 630
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	580, 630
BseMII	CTCAG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	212, 296
BsiSI	CCGG	1 cut(s)	302
BsiWI	CGTACG	2 cut(s)	14, 18
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	580, 630
BsmAI	GTCTC	2 cut(s)	266, 646
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	212, 296
Bso31I	GGTCTC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	2 cut(s)	212, 296
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	4 cut(s)	23, 499, 512, 555
BstACI	GRCGYC	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	266, 646
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	212, 296
BtgZI	GCGATG	1 cut(s)	252
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	15, 19, 280
CviAII	CATG	2 cut(s)	62, 105
CviJI	RGCY	5 cut(s)	11, 212, 254, 296, 320
CviKI_1	RGCY	5 cut(s)	11, 212, 254, 296, 320
CviQI	GTAC	3 cut(s)	15, 19, 280
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DrdI	GACNNNNNNGTC	2 cut(s)	482, 538
DseDI	GACNNNNNNGTC	2 cut(s)	482, 538
EaeI	YGGCCR	1 cut(s)	294
Eco105I	TACGTA	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	2 cut(s)	65, 108
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	61, 104
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	212, 296
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	65, 108
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	167, 620
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	154, 177, 488, 544
Hpy188III	TCNNGA	2 cut(s)	343, 617
Hpy99I	CGWCG	1 cut(s)	499
HpyCH4III	ACNGT	4 cut(s)	23, 499, 512, 555
HpyCH4IV	ACGT	2 cut(s)	17, 639
HpyCH4V	TGCA	2 cut(s)	56, 127
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	17, 639
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	2 cut(s)	65, 108
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	6 cut(s)	149, 201, 228, 240, 315, 316
LweI	GCATC	1 cut(s)	275
MaeII	ACGT	2 cut(s)	17, 639
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	581
MluCI	AATT	7 cut(s)	109, 182, 206, 357, 372, 380, 446
MmeI	TCCRAC	2 cut(s)	173, 381
MnlI	CCTC	5 cut(s)	189, 397, 466, 522, 588
Mph1103I	ATGCAT	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	444, 501, 557
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	65, 108
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	167, 620
Pfl23II	CGTACG	2 cut(s)	14, 18
PkrI	GCNGC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspLI	CGTACG	2 cut(s)	14, 18
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	16, 20, 281
RsaNI	GTAC	3 cut(s)	15, 19, 280
SaqAI	TTAA	3 cut(s)	444, 501, 557
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	3 cut(s)	20, 408, 642
SfaNI	GCATC	1 cut(s)	275
SfuI	TTCGAA	1 cut(s)	247
SnaBI	TACGTA	1 cut(s)	18
Sse9I	AATT	7 cut(s)	109, 182, 206, 357, 372, 380, 446
SsiI	CCGC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	4 cut(s)	23, 499, 512, 555
TaiI	ACGT	2 cut(s)	20, 642
TaqI	TCGA	3 cut(s)	247, 471, 494
TasI	AATT	7 cut(s)	109, 182, 206, 357, 372, 380, 446
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	167, 620
Tru1I	TTAA	3 cut(s)	444, 501, 557
Tru9I	TTAA	3 cut(s)	444, 501, 557
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	159, 290
TspGWI	ACGGA	2 cut(s)	492, 548
XmnI	GAANNNNTTC	1 cut(s)	182
ZraI	GACGTC	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.