Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Forward (+)

50981103 .. 51009177

Gene Structure 28075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATTCATCACTATCATCTATTCCAAATGATCGGTGCCGCCACAGTGAGGATCTTCAAGGTGAGGCTGAAGTGCCACTTGTGGTGACTAAGCCTCGGTTTAGGAGACTTGGGTTGTGCAGGATTATGATGGTGGTACTAGCCTCCACTCCTATGTCGGTCAGCAACACCGTGATCCGGGCAATTGAAACAAAAGGGCCTAGGGGAAAGAAAAACTGTTTTCACGGGGCGAAGCTAGATGTGGGTTTTGATAAACTACTCCCTCTTGATGAATTTCATGATCCCTCTCATGGCTACCTTGTTGATGACAAGTGCGTCTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAACAAGAATAGGAATCGGAGAACGTATATCGAGGGTAAAAAAGCCCATCACGTACAAGCATATTTGGAAGGTTAAGAATTTTTCAAAGTTAGCTGATCCATGCTATATCTCGGAACCATTCACTGCTGGAGGCCAAAAATGGAAGCTGTTTAGCTGCTGGTATTTATGTTTTGGCCTTTGGTCAAATAATGGAGAGCACTCTAAGATATATGACACACTTGCATGTAAGAGCAACTCTAACAGCTTCCCCATAATTTCTTTTGATTGGGTGTGGAAGAGGATTGGAGAAGTTGAGCCCGAGCACGACGGAAATCGCCTCTCAATCTTCCAATGGCCATATCTCCCTCCACAGACCTCCGATCGACTTGATTCCAAAAGCATTTTCATTCGTCTTGAAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

250

Amino Acids

28.59

Weight (kDa)

8.8

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	68 - 111	2e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	36
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	4 cut(s)	60, 169, 275, 437
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	2 cut(s)	272, 424
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	138, 401
AfiI	CCNNNNNNNGG	3 cut(s)	49, 177, 290
AgsI	TTSAA	4 cut(s)	59, 188, 432, 743
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	5 cut(s)	235, 440, 493, 501, 591
AluI	AGCT	5 cut(s)	235, 440, 493, 501, 591
Alw21I	GWGCWC	2 cut(s)	546, 651
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	4 cut(s)	60, 169, 275, 437
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	4 cut(s)	197, 478, 520, 680
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	272, 424
AspA2I	CCTAGG	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	74, 97
AvaI	CYCGRG	1 cut(s)	644
AvrII	CCTAGG	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	645
Bbv12I	GWGCWC	2 cut(s)	546, 651
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	2 cut(s)	124, 401
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	3 cut(s)	140, 201, 236
BisI	GCNGC	2 cut(s)	40, 502
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	41, 503
Bme1390I	CCNGG	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	38, 325, 462
BmrFI	CCNGG	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	95, 200, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 177, 290
BseDI	CCNNGG	3 cut(s)	95, 200, 327
BseLI	CCNNNNNNNGG	3 cut(s)	49, 177, 290
BseXI	GCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	709
BshFI	GGCC	4 cut(s)	199, 480, 522, 682
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	709
BsiHKAI	GWGCWC	2 cut(s)	546, 651
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	49, 177, 290
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	199, 480, 522, 682
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	3 cut(s)	546, 645, 651
Bsp143I	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	199, 480, 522, 682
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	38, 325, 462
BspPI	GGATC	4 cut(s)	60, 169, 275, 437
BspT107I	GGYRCC	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	95, 200, 327
BssMI	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	47, 172, 218
Bst6I	CTCTTC	1 cut(s)	617
BstBAI	YACGTR	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	90, 549
BstKTI	GATC	6 cut(s)	34, 55, 177, 283, 445, 709
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
BstMCI	CGRYCG	1 cut(s)	709
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	199, 480, 522, 682
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	52, 468
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	137, 400
CviAII	CATG	4 cut(s)	278, 290, 447, 570
CviQI	GTAC	2 cut(s)	137, 400
DdeI	CTNAG	2 cut(s)	90, 549
DpnI	GATC	6 cut(s)	33, 54, 176, 282, 444, 708
DpnII	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	4 cut(s)	281, 293, 450, 573
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 302, 334
FatI	CATG	4 cut(s)	277, 289, 446, 569
Fnu4HI	GCNGC	2 cut(s)	40, 502
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	40, 502
FspBI	CTAG	3 cut(s)	140, 201, 236
GluI	GCNGC	2 cut(s)	40, 502
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	199, 480, 522, 682
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	281, 293, 450, 573
HinfI	GANTC	3 cut(s)	5, 360, 716
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	74, 97
Hpy188I	TCNGA	3 cut(s)	365, 460, 706
Hpy188III	TCNNGA	3 cut(s)	266, 278, 740
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	47, 172, 218
HpyCH4IV	ACGT	2 cut(s)	370, 398
HpyCH4V	TGCA	2 cut(s)	120, 569
HpyF3I	CTNAG	2 cut(s)	90, 549
HpySE526I	ACGT	2 cut(s)	370, 398
Hsp92II	CATG	4 cut(s)	281, 293, 450, 573
Kzo9I	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	106, 191, 459, 490
Lsp1109I	GCAGC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	140, 201, 236
MaeII	ACGT	2 cut(s)	370, 398
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	6 cut(s)	33, 54, 176, 282, 444, 708
MboI	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
MboII	GAAGA	3 cut(s)	47, 634, 664
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	3 cut(s)	546, 645, 651
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	5 cut(s)	183, 272, 424, 600, 748
MluNI	TGGCCA	1 cut(s)	682
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	2 cut(s)	420, 751
MslI	CAYNNNNRTG	2 cut(s)	152, 568
Msp20I	TGGCCA	1 cut(s)	682
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
NlaIII	CATG	4 cut(s)	281, 293, 450, 573
NlaIV	GGNNCC	3 cut(s)	38, 325, 462
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	573
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	5, 360, 716
PkrI	GCNGC	2 cut(s)	41, 503
Ple19I	CGATCG	1 cut(s)	709
Ppu21I	YACGTR	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	38, 325, 462
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	138, 401
RsaNI	GTAC	2 cut(s)	137, 400
RseI	CAYNNNNRTG	2 cut(s)	152, 568
SaqAI	TTAA	2 cut(s)	420, 751
SatI	GCNGC	2 cut(s)	40, 502
Sau3AI	GATC	6 cut(s)	31, 52, 174, 280, 442, 706
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	3 cut(s)	546, 645, 651
SmiMI	CAYNNNNRTG	2 cut(s)	152, 568
Sse9I	AATT	5 cut(s)	183, 272, 424, 600, 748
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	3 cut(s)	140, 201, 236
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	47, 172, 218
TaiI	ACGT	2 cut(s)	373, 401
TaqI	TCGA	2 cut(s)	377, 709
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	5 cut(s)	183, 272, 424, 600, 748
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	5, 360, 716
Tru1I	TTAA	2 cut(s)	420, 751
Tru9I	TTAA	2 cut(s)	420, 751
TscAI	CASTG	2 cut(s)	52, 475
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	266, 285, 721
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	52, 475
XapI	RAATTY	2 cut(s)	272, 424
XceI	RCATGY	1 cut(s)	573
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	3 cut(s)	140, 201, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.