Rroxscaffold_2G00107650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014814
Physical Location & Seq
Reverse (-)
31654657 .. 31657241
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107650.1

Sequence Viewer

Length: 342 bp
ATGTTGCGTGCACCGGACACACCGCCGAGGACCACTACGGCAGAGTTGAATGGTTTCGTCGAATTTGGAGCGAGGCTAAGAAGAGGAGCTTTGGGACAGATCCGACGAATGCGAGTAGTAAGAAGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAAGGTGAGGTTGAGAACTGCAATTCGAATGGTTGTGGGCGAAGGAGAGTTCGAAGAGCCGCCGGTTGGTCCTTTCGCTCCGGTGGTAGTTCCAAGAGCTAGGAAGGGTGTTGACATCAACAAGGACCCAAGTGGGGTGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGATTCCCGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

11.79

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 215
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 221, 289
AgsI TTSAA 2 cut(s) 49, 151
AluBI AGCT 2 cut(s) 89, 254
AluI AGCT 2 cut(s) 89, 254
Alw21I GWGCWC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 9
AlwI GGATC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 30, 224, 280
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 2 cut(s) 181, 207
AvaII GGWCC 3 cut(s) 30, 224, 280
BaeGI GKGCMC 1 cut(s) 13
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 54
BfaI CTAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme18I GGWCC 3 cut(s) 30, 224, 280
BmgT120I GGNCC 3 cut(s) 30, 224, 280
BmiI GGNNCC 1 cut(s) 282
Bpu14I TTCGAA 2 cut(s) 181, 207
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 13, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 289
Bse118I RCCGGY 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 221, 289
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 3 cut(s) 14, 218, 236
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 221, 289
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 114
Bsp119I TTCGAA 2 cut(s) 181, 207
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 99, 153
BspACI CCGC 2 cut(s) 23, 215
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 2 cut(s) 118, 204
BspT104I TTCGAA 2 cut(s) 181, 207
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 99, 153
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst6I CTCTTC 4 cut(s) 76, 118, 136, 204
BstBI TTCGAA 2 cut(s) 181, 207
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 77
BstKTI GATC 2 cut(s) 102, 156
BstMBI GATC 2 cut(s) 99, 153
BstSLI GKGCMC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 30, 224, 280
CviJI RGCY 4 cut(s) 76, 89, 214, 254
CviKI_1 RGCY 4 cut(s) 76, 89, 214, 254
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 101, 155
DpnII GATC 2 cut(s) 99, 153
Eam1104I CTCTTC 4 cut(s) 76, 118, 136, 204
EarI CTCTTC 4 cut(s) 76, 118, 136, 204
Eco47I GGWCC 3 cut(s) 30, 224, 280
EcoO109I RGGNCCY 1 cut(s) 280
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 255
GluI GCNGC 1 cut(s) 215
HapII CCGG 3 cut(s) 14, 218, 236
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 1 cut(s) 329
HpaII CCGG 3 cut(s) 14, 218, 236
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 11, 268
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 151, 326
Hpy8I GTNNAC 2 cut(s) 11, 268
Hpy99I CGWCG 2 cut(s) 62, 108
HpyAV CCTTC 2 cut(s) 191, 253
HpyCH4V TGCA 2 cut(s) 11, 176
HpyF3I CTNAG 1 cut(s) 77
Kzo9I GATC 2 cut(s) 99, 153
LguI GCTCTTC 2 cut(s) 118, 204
LmnI GCTCC 3 cut(s) 68, 86, 238
LpnPI CCDG 3 cut(s) 27, 231, 249
MaeI CTAG 1 cut(s) 255
MalI GATC 2 cut(s) 101, 155
MboI GATC 2 cut(s) 99, 153
MboII GAAGA 4 cut(s) 93, 135, 153, 221
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 62, 177
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 6 cut(s) 21, 66, 77, 156, 297, 333
MroXI GAANNNNTTC 1 cut(s) 53
MspI CCGG 3 cut(s) 14, 218, 236
Mva1269I GAATGC 1 cut(s) 114
NdeII GATC 2 cut(s) 99, 153
NlaIV GGNNCC 1 cut(s) 282
NmeAIII GCCGAG 1 cut(s) 51
NspV TTCGAA 2 cut(s) 181, 207
PciSI GCTCTTC 2 cut(s) 118, 204
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 216
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 3 cut(s) 30, 224, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 99
SapI GCTCTTC 2 cut(s) 118, 204
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 2 cut(s) 99, 153
Sau96I GGNCC 3 cut(s) 30, 224, 280
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 91, 134, 162, 167, 256
SfuI TTCGAA 2 cut(s) 181, 207
SinI GGWCC 3 cut(s) 30, 224, 280
Sse9I AATT 2 cut(s) 62, 177
SsiI CCGC 2 cut(s) 23, 215
SspMI CTAG 1 cut(s) 255
TaqI TCGA 3 cut(s) 60, 181, 207
TasI AATT 2 cut(s) 62, 177
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 1 cut(s) 329
VneI GTGCAC 1 cut(s) 9
VpaK11BI GGWCC 3 cut(s) 30, 224, 280
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.