Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Forward (+)

2615590 .. 2617724

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGAAAGTTGGAAAGGAAGGAGTCATTACGGTGGCTGATGGGAATACATTGGATAATGAAAAGGAAGTGGTCACCAACTGTGGTCACTTTTCCTCCACAAAAGCTGTTGGAACTTTCATCTTTAGGAGACAAGCTTTTGAGCTTTGCAACATGTCGTCCACTAGTGGCTTTGTTTATGGAGCATTTTGGAATCCGGATGGTGGGGTGATACAAACACTGCTAGTGACCGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGATGCTATGAAGACGCAGCGGGATTGGAGAGTGAGAATGTAGGGTTCGAGGACGGAGATGTCCGAAGTTCGACGGTTAAGGATAACCGTAGTGATTGTAATACGAGGACGGGGATGTCCGAAGACCCAAGTGAGATGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGATTCCCGTGAGTGGAATGATGTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0031090 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046907 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

157

Amino Acids

17.36

Weight (kDa)

4.51

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	329, 385
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	203, 453
AflIII	ACRYGT	1 cut(s)	153
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	3 cut(s)	107, 137, 145
AluI	AGCT	3 cut(s)	107, 137, 145
Alw26I	GTCTC	2 cut(s)	124, 469
AlwI	GGATC	1 cut(s)	267
Aor13HI	TCCGGA	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AsuHPI	GGTGA	2 cut(s)	67, 220
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	288, 399
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	4 cut(s)	35, 194, 227, 237
BcoDI	GTCTC	2 cut(s)	124, 469
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 224
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmsI	GCATC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	288, 399
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 453
BseAI	TCCGGA	1 cut(s)	196
BseGI	GGATG	3 cut(s)	205, 278, 390
BseLI	CCNNNNNNNGG	2 cut(s)	203, 453
BseXI	GCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	203, 453
BsmAI	GTCTC	2 cut(s)	124, 469
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	252, 259
BspACI	CCGC	1 cut(s)	290
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	267
BssMI	GATC	2 cut(s)	252, 259
BssSI	CACGAG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	4 cut(s)	34, 83, 346, 359
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	205, 278, 390
BstKTI	GATC	2 cut(s)	255, 262
BstMAI	GTCTC	2 cut(s)	124, 469
BstMBI	GATC	2 cut(s)	252, 259
BstMCI	CGRYCG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	157
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	2 cut(s)	288, 399
BtsCI	GGATG	3 cut(s)	205, 278, 390
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	218
CseI	GACGC	1 cut(s)	293
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	38, 107, 137, 145, 171
CviKI_1	RGCY	5 cut(s)	38, 107, 137, 145, 171
DpnI	GATC	2 cut(s)	254, 261
DpnII	GATC	2 cut(s)	252, 259
DrdI	GACNNNNNNGTC	2 cut(s)	329, 385
DseDI	GACNNNNNNGTC	2 cut(s)	329, 385
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	155, 180, 279
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	212, 285, 397
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	165, 224
GluI	GCNGC	1 cut(s)	288
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	3 cut(s)	24, 193, 443
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	67, 220
Hpy166II	GTNNAC	2 cut(s)	162, 249
Hpy188I	TCNGA	2 cut(s)	335, 391
Hpy188III	TCNNGA	2 cut(s)	197, 440
Hpy8I	GTNNAC	2 cut(s)	162, 249
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	34, 83, 346, 359
HpyCH4V	TGCA	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	252, 259
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	1 cut(s)	210
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	165, 224
MaeIII	GTNAC	3 cut(s)	73, 86, 226
MalI	GATC	2 cut(s)	254, 261
MboI	GATC	2 cut(s)	252, 259
MboII	GAAGA	2 cut(s)	293, 404
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	5 cut(s)	106, 313, 369, 411, 447
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	252, 259
NlaIII	CATG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	73, 86, 226
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	193, 443
PkrI	GCNGC	1 cut(s)	289
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	73
PvuI	CGATCG	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	252, 259
SchI	GAGTC	1 cut(s)	33
SetI	ASST	3 cut(s)	109, 139, 147
SfaNI	GCATC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	165, 224
TaaI	ACNGT	4 cut(s)	34, 83, 346, 359
TaqI	TCGA	2 cut(s)	318, 341
TaqII	GACCGA	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	193, 443
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	3 cut(s)	73, 86, 226
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	3 cut(s)	73, 86, 226
TspDTI	ATGAA	3 cut(s)	75, 109, 294
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	225
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	2 cut(s)	165, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.