Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003397

Physical Location & Seq

Genomic Coordinates Reverse (-)

19008361 .. 19022435

Gene Structure 14075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1083800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7686 bp

ATGCCGGACGCAGACGCACCCTCCGCTTCCCAAACCTCTATATCCGCCGTGGGCCCCACCCACCACCTCCCTCTCCAAATCCTCAGATCCGACCCGACACCTCCTGCCCCGACCCGATCCGACCCACCGGGATCCACCATCGACTGGCTCCCCGACTTTCTGGAATTTTCATGGGTCGCCTACGGAGCCTCATCGCTACTAGTGATCTCCCACTTCCCCTCCCCACTCTCCGATACAGAAACACTCATCGGACCCATTTTCCGGCAGGTATTCGAGCTCTCCGGCGACCCCTCATCGGCCGTCGAAGCTGTTTCTTGGTCCCCTGCCATGCCCTCGATTGGCGAGCTTGCTGCCGCAGCTGAGAATTGCGTTTGGGTGTTCTCGCATGACTCGGCGACGTCCAAAGGTTCTTTTTGTTGGAGCCAGAATGCAGTACTTGTACAGTCGACGAAGGTTAAGGCAATCAGATGGACGGGCTCAGGGGATGGAATTGTTTCCGGTGGAGTTGAGGTGGTTTTGTGGAAAAGAAATGGCAGGTTTTGGGAAATTGCTTGGAAGTTTAAAGCAGAATTACCACAAAGTATGGTCACCGCAACTTGGTCTCTCGATGGACCATTTGCAACTGCAGCTTATCAGAGTAAATGGCAGACTGAAGGATTGTCAACTAATAAGGCTAGCAAATGTGTGTTAGTATGTCAAAGTGATGGAAAATCTGGATTTTTGAAATCCGACCTACATCATCCTCATGCTGTCTCAATGATTCAATGGAGGCCATCTACCGATAGGCATTTAAACAGAGATGCAAGACATCCACCAAGGCAAGTGTTGCTCACTTGTAGCACAGATGGAACTATTAGGTTATGGTGTGAGGTTAATGATGGAAGGGGAAGAAAATTTGGTAAGGACATGAATGACCCCAAAACAATGAGATGCTCTTTTTCTGTAGCCGCAGTAATAGAGATAAACCAGGCTTTGAATGGACTTCTGGGCACTGATATATATGTGATGTGGGCTACAGAAATTGGGGGTGTATGTAAAACTCGTGAAGGATCTAAACAAATTTTCTCCACAAAAGGTTATCTGCAGGACCTGGCTGGTAATTGCGAGTGGTTGATTGGGTTTGGCCCTGGAATGTTGGTAAATTTCTGGGCTATACACTGTCTCGACGATGTCTCACCAATACGATTTCCGCGGGTTACTTTATGGAAGACACAGAAACTGCAAGGTCTGAAAGTGGGAAATTCTAATTGGACTGGACTTTCTAACTGTAAAGATGGAATACCTCTTAATAAAGTTGTTATCTCAAGGAACTCCTTGTCTGGTCCACCAACATTATGCTCTTTGGTTCAGTTATTACCTTGTAATTCCTTGGTTTGGTCACGAATACATACTCAGACATCAAATAATATAGAGGATACACCCATTAATAAATCTGGTGCAGAGAACATCATATCATGTTCAGCTGGTGGACTCCTGAATTTGGATGGTCATGCTGGAAGAATCTTACAAGTAGATGTGCATCCTTATAGCTGTGAAGTTGAGTTGGCTGTCTCTTTAGATTCTTGTGGATTACTTCTTTTTTGGTTCTTTTCTACTATTTCAAACTGCATCTTGGACCGGCCAACACTAATTCCAACATGGGAGCTTTGTGGGAAGCTTGCGACTCAAGGTTCATGCTCCAAATATACAAGCTTGAGGTGGGCACCATCAATTGGAAATGAAGCAGTTATTCTTCTTATGGGACATGCTGGAGGGATTGATTGCTTTGTTGTAAAAATTCATCACAATGAGGAAGAAAGTATAGAATGTCACTACTTATGTACAATACCTTTTACAGGTCATGGTCCTTATGTGGATGGTCCTGCTAGTATCTTTTCAATTCCTTTGCCTTCAACTTGTCCTAAAACCCTAAAATCTAATAAACTTTTGCTTTTGGGTGTATGGATGAATGGGTTTCAGGCTCTTTCTTGGGAAATAACCTTGCATTCTTTTGATTTATCAAGAAGCTACTGTGAGTGCAATTTTGATGCAGGAAATGCGTCTGAAGGCAGTATGTGGGGATTTGAAACTACTTTTGCTGATAAAAGATATTGTCTTAATGTAAAACCCTGCTCATCACAGATCCCAGATCCTCACACGCATGATGAGGTTACAAGTTTTGCTGTGGTCTACCCAGGTAGAAAGATCTGTATGGAAAAGAATTTGGCTTCTATTATTGATCTATGCTATCCTCCATATATTATGGCTACAGGTTGCTCCGATGGTAGTTTGAAATTGTGGAGGAGTGTCATGGATAAACCATCAACGCCTCACATTCCATGGGAACTTGTGGGTAAGTTTCAGGCACATCAAGGACCTATTAGCCATGTATGCTTATCTGACTGTGGTCGTAAGATAGCAACCCTTTGGAAGGAGCTTTCTTCAAATACTGTTAGCACTCTTCATATATGGGACTCTGTACTCCTAGCAGGTGCAGGGTCTTTTATGCTAGAACATACAATATCCTTTGGTCAAGATCTTGTTGCTTTAAATTGGCTATCATTTGGAAATGGTCAGTTATTACTTGGAGTTTGCACAAAAAATCAGTTGCAAGTATATTCCCAGCAGCGTTGCGGTGGCCAGACTTTATTAAACTCTGAAAAATCATTGAAAAGGGATATATGGGTCTGCATTGCGTCGACTCATACCTTCCCTCTCATTAATGATTTCTTTTGGGGCCCCAGAGCATCAGCTGTATTTGTTCATAGTAGCTACTTTTGTGTAAATAGTCAGTGGTTATTCCTTGCAGATAAGAAACATCTTGTTAATGTCGATCCAAGTTACATCATGGAAAATTGCTTGGATTCTGTGGGTGGAATGGAAGAGGACATTAGTTCTGGAATTTTCATTGATTGTGGACTTGGTCAATTCAGTAAAATATTACTTGATAACAACAGAAGAGATTGCAAGTCTGATATTCCATTGGAGATTGATTTGAAAAAGGATTATCTTTCTAGCAGCTTGTTTGTAGCAAGGGCTCAACTGAAGTGTAGTGGGGCTACTAAAGTAAGTATATGGACCATGCATGAAGTGGTCGAGCAGTTAAGTGGATCTCTGCCAGTTTATCACCCAGAGGCTCTCTTTATGAATATCTATTCAGGAAATTGGAAGCGTGCTTACATTGCTCTGAGGCATCTTAATGAGTTTCTCTCTTCTAATTCTTCTCCTGAGAGGAAGTGTAGCCCTGCAAAGTCTAGCAATTGCATTCCGCAGATTCCTTTGTCAAATTTCCTTGATGCACATATCTCAATAAATTCAAATGACAAAGGATTTCAGTGGAGTGGTGATGCCTCTGTATTTTCTTCATCTTCTCCGTTTCAAAGAGGCTTTGGCCAATTTACAAACAGTTTGGACTCTTATGGTTCCAGTAATATGATCAATTCTTCCTCAACAAAATCTGAACTCAATGACTTTATTGAGCCTTTTGAGAAGTTGTACAAGTCAGCAGATATAAGTGACATAGAGAAGATTCAAATTCTTGCCATTATAGATCTTCTTACTGAATTGTGTAGTTCAAACTCTAGTTCTGCATATGAAAGTCTTGATGAACCTGGACGGAGGTTTTGGGTTGGATTGAGGTTTCAGCAACTACATTTTTTCCGAAAGTCTGGTAGATCAGCATCCGTGGAAGAGTTGGTAATTGACTCCAAGTTGATTGGATGGGCCTACCACTCTGATTGCCAGGAGAATTTATTTGGTTCGTTTCTACCTAATGATCCATCTTGGCAAGAAATGCGGAATTTGGGTGTAGGATTTTGGTTTACAAATACAGCACAGTTGTGTTCAAGGATGGAGAAACTGGCAAGATTGCAGTATCTGAAAAGGAAAGATCCTAAAGACTGTGCATTGCTGTACATTGCACTGAATAGAATTCAAGTTTTGTCTGGCCTTTTCAAAATAAGCAGGGATGAGAAGGATAAGCCCCTTGTTGGATTTCTTTCACGCAATTTTCAGGAGGAGAAAAATAAGGCAGCGGCTTTGAAGAATGCATATGTCTTAATGGGGAGACATCAGCTGGAATTAGCAGTTGCTTTCTTTCTGCTTGGAGGTGATACTTCTTCTGCAGTCAATATTTGTGCAAAGAACCTTGGGGATGAACAGCTTGCATTAGTTATCTGTCGACTAGCTGAGGGTCGTGGTGGGCCACTAGAGAGACACTTAATTACGAAGTTCATGCTACCATCCGCAATTGAGAAGGGCGACTGTTGGTTGGGAAGCCTTTTGGAGTGGGAGCTGGGAAATTACTCTCAATCTTTTACATGCATGCTTGGTTTCCAAATAAATTCTGCAACTGAAAAGTATGCACTTTTGTCCAACGGTGCTCCTTTTTCAGACCCAAACGTTGGTCTGTATTGTCTAATGCTAGCAACCAATAATTGCATGAAAAATGCTGTTGGGGAGCAAAATAGTGCATTAATCGGAAGGTGGGCAATATTGACTACAGCTACTGCATTAAACAGATGCGGTCTTCCACTTGAAGCTTTGGAGTACCTTTCATCTTCACCAAACATTCCTGGGGATACAGATGAAAGGGGTACATCAGATCTTGGGCATTCTGAAAATCTGCGTGCAATTCTAAATCCTTCTCCCAGAAATTCTAGCAATTGGTTATCAAGTAATGTGGCTCTCCATCTGGAGTTCCAAGCCAAATCAGATTTGACACTTCAATACTTATCAAAGTTGGTAAGAGAGCATCCAAGCTGGGTGGATATTGTCTTTGGATCTTTTCAAGCTAGTACATGTGTAAAGGAGTGCAAAAATCAGGAATATGTAAAAGTTCTTGAATCTTTCCAACAGAAGTTATACACAACACTAAATCAGTTGGAGCAGAAGTTTTCAGTGGTTCCTTTCCATCTTGTTAGCATGATTTTAATCTCGCTGTATGATTGTGGGCTGTGGTTTGTTGGATATGATATATTACATAGATACACTGCTCAAAATCAAGATCTAGATAAAATCCAAACAGCTGACAAATTCCTATCATATGCTCTTATGCATAAGCCGCTTTTGAAGGCCACCAGAGAAACTTCCCTTTTGTTTTCACGCGTTATTGTTGCCTGCGGTATAACATGCTCTGTTCTGAAGTCGCATTATATTGAAGACAATGTGTCTGGTGATAGTAGATCTACAGGGTCTGATGCTTTGGAGTATTACTTTCAAGGTCTTATACTGTTATTGAGGAGTTTAAGGGCTGCTTTGGGAACTACCTTTTGCTCCACCACGGAAGATCTCATAATGAAACCCCTTACAATCATTGATTTGATGGAGTATTATGTACATCTTGCATATGCTTGGCATCATAGAAACTCTAAAGTTCTCTTACTATTGGTGCAACCCCTTCTGATCACATTTACTAATGGGCATACACCTTATGAAGTTGATATGAAGAATATGAAGAAACTCCTCACCCAGATTCCAGAGGTGGCGGTTCAAAATAATGTGGGCCTTCATGTTTCTCAAGAGAGAAATATAACGCATTTGGTTCCAGAAGATGAAAGATGGCAAATCATAAGTGTTTGCTTATGGCAACACATATCCAGATTCATGCAACATAACTTAAACGTATTGTCGTATAACCTTGATGATGATGGCTGTTTTGCTGGTGAACCCCATCAAAAATATTTTTCATGGGCACCTATCTCTGCAAGTTTAGATTCTCATAGCAGCAGTCTGAAAGAACTGATTGGGCTGGTCTCATTGAGCTTAGTAAAGTTATTGAAGCCCACACTTTCACAGGTTGCCTCTTATCATGTAAAACAGCTAGCATCACTTCTACAGCACAAAATGGATAATGGGTTGCGTGTAACAACTCTTGTTTGGTTAGAAGAATCTAACAAGTCTCAACCTGGAGCTCTCAATCAGCATATAAATCAGGATAATGTCAAATTGGATACGATAGGTGAAAGACTTGAAGCTGATATGTTATGGGATGCCTGTGCTGACCCTAAAATAATATACGAAAGTTTTGCCAAGGAAAAAATAGACTTGTCTCACTCTCTTGATCATAAACCCTCTAATGGATGGGGTACCATAAACAGGGGCATCGGGGCTGCAGATGAAACTGAGGAAATTCACCATCATGAAGTTACACTCAATAGTAGTTCTCCCAACAGTGAAGCTGGATCACCTGCTAAAAGTGTATTTCGGGGTGGGCATTCTTTCCTTAGTGCCTGGCAGAAAGACACAACCATTTCAAAGGAAGTCACACCTTTTCTAAACCCAAAGGAGATATATAAGAGAAACGGGGAGCTTTTGGAGGCATTGTGTCTCAACTCCATTGACCAGAGTCAAGCTGCACTTGCAAGCAACCGAAAGGGGATTATATTTTTTAATTGGAAGGATGATATGCCTTTCAGAGATCATTCAGATTATATTTGGTCACTGGCTGATTGGCCACCAAATGGGTGGGCTGGTTCTCAGTCAACCCCTGCTCCAACATGTGTTTCTCCTGGTGTTGGTCTTGGAAGCAAGAAAGGAGCACACCTTGGATTGGGTGGAGCAACTGTTGGTGTGGGTTCTTTTGCAAGGCCAGGAAGAGATTTGACGGGTGGTGGAGCATTTGGGGTTCCAGGTTATGCTGGTATGGGTGCATCTGGTTTAGGTTGGGAAACTCAAGAGGACTTTGAGGAGCTTGTTGACCCACCAGCTACTGTGGAGAATGCAAATACGAGGGCTTTTTCCAGTCACCCATCTAGACCTTTCTTCTTGGTTGGGTCTAGCAATACACACATCTACTTATGGGAGTTTGGTAAGGACAAAACTACTGCAACTTATGGAGTGCTGCCTGCTGCAAATGTCCCTCCACCTTATGCTCTTGCATCGATATCCGCTTTGCAGTTTGACCACTGTGGACACAGGTTTGCTACTGCGGCCTTAGATGGAACTGTGTGCACGTGGCAGCTGGAGGTCGGAGGAAGGAGTAACATTGGTCCTACGGAGTCATCTCTATGCTTTAACAGCCACGCATCCGATGTTGCTTATGTCACTTCAAGTGGATCAATCATTGCTGTGGCTGGATATAGCTCCAATAGTGTTAATGTGGTTATATGGGATACATTGGCTCCACCTACAACCTCACGAGCTTCTATTCTTTGTCATGAAGGTGGTGCACGCTCGCTTGCAGTGTTTGATAATGACATAGGAAGTGGCTCTGTCTCCCCCCTTATTGTGACTGGTGGTAAAGGTGGTGATGTCGGACTTCATGATTTCCGGTACATTGCTACTGGAAGGAGTAAAAGGCATAGGCATTCGGATAAAGGTGAACAAGTCATCAAGACATCATCGAATAATGATACGCATTCTGAAAATGGCACCAAATTTGGGGAACAAAATCAAAATGGGATGCTTTGGTATATACCGAAGGCTCACTCAGGGAGTGTGACCAAGATATCCATAATCCCAAACACGAGTTTGTTCTTAACTGGAAGCAAAGATGGAGATGTTAAGCTTTGGGACGCCAAGAAAGCTAAGTTGGTACATCACTGGCCGAAGTTGCATGAAAGACACACATTTTTGCAACCAAGCACTCGAGGCTTTGGCGGAGTAGTCCAGGCTGCTGTCACAGATATAAAAGTCGTTTCACACGGTTTTCTTTCGTGCGGTGGAGACAGCACTGTAAAGTTAGTTCAACTCAAAGACCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0009987 GO:0016043 GO:0019725 GO:0022607 GO:0030003 GO:0030004 GO:0030641 GO:0032991 GO:0034622 GO:0042592 GO:0043291 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045851 GO:0048878 GO:0050801 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071840 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rav1p_C WD40

Protein Analysis

2562

Amino Acids

282.15

Weight (kDa)

6.31

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rav1p_C	PF12234	757 - 1444	2.4e-76	RAVE protein 1 C terminal
Beta-prop_THOC3	PF25174	2287 - 2523	5.2e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	2435 - 2507	8.2e-06	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46560 AT2G46560 AT2G46560
fragaria_vesca	FvH4_7g16880 FvH4_7g16880 FvH4_7g16880 FvH4_7g16880
malus_domestica	MD01G1083800.v1.1
prunus_persica	Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360111
rosa_laevigata	RLG00000018213 RLG00000027832
rosa_multiflora	Rmu_co8378581.1_g000001 Rmu_co8408019.1_g000001 Rmu_sc0007813.1_g000007 Rmu_ssc0000368.1_g000041
rosa_roxburghii	Rroxscaffold_4G00296380
rosa_rugosa	Rorug01G0275200 Rorug01G0275300
rosa_samantha	Rh1AG289000 Rh1BG254500 Rh1CG272000 Rh1DG283600
rosa_wichuraiana	Rw1G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2459, 6175
AatII	GACGTC	1 cut(s)	401
Acc36I	ACCTGC	4 cut(s)	256, 525, 2459, 6175
Acc65I	GGTACC	1 cut(s)	6065
AccB1I	GGYRCC	4 cut(s)	1702, 5671, 6065, 7349
AccB7I	CCANNNNNTGG	4 cut(s)	144, 1712, 4382, 6440
AccI	GTMKAC	4 cut(s)	446, 2169, 2678, 4159
AccII	CGCG	2 cut(s)	1192, 5085
AclI	AACGTT	1 cut(s)	4380
AcoI	YGGCCR	6 cut(s)	297, 1619, 2617, 3370, 6431, 7523
AcuI	CTGAAG	4 cut(s)	672, 2064, 3044, 5141
AcvI	CACGTG	1 cut(s)	6933
AcyI	GRCGYC	2 cut(s)	398, 7494
AflIII	ACRYGT	3 cut(s)	4778, 5083, 6476
AhdI	GACNNNNNGTC	1 cut(s)	5146
AhlI	ACTAGT	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	6 cut(s)	1231, 1263, 6466, 6498, 7493, 7525
AleI	CACNNNNGTG	1 cut(s)	3817
Alw21I	GWGCWC	6 cut(s)	279, 4363, 5893, 6520, 6932, 7150
Alw44I	GTGCAC	2 cut(s)	6928, 7146
AlwNI	CAGNNNCTG	6 cut(s)	1090, 1219, 3856, 4487, 5174, 6689
Ama87I	CYCGRG	1 cut(s)	7566
ApaI	GGGCCC	2 cut(s)	56, 2720
ApaLI	GTGCAC	2 cut(s)	6928, 7146
ArsI	GACNNNNNNTTYG	2 cut(s)	3585, 3617
AseI	ATTAAT	3 cut(s)	1425, 2700, 4454
Asp700I	GAANNNNTTC	1 cut(s)	493
Asp718I	GGTACC	1 cut(s)	6065
AsuC2I	CCSGG	1 cut(s)	129
AsuNHI	GCTAGC	3 cut(s)	674, 4402, 5800
AvaI	CYCGRG	1 cut(s)	7566
BaeGI	GKGCMC	7 cut(s)	56, 992, 1705, 2720, 5674, 6932, 7150
BalI	TGGCCA	3 cut(s)	2619, 3372, 6433
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	4 cut(s)	1702, 5671, 6065, 7349
BanII	GRGCYC	6 cut(s)	56, 279, 479, 2720, 3019, 5893
BarI	GAAGNNNNNNTAC	2 cut(s)	3140, 3172
BauI	CACGAG	3 cut(s)	1041, 7116, 7444
BbrPI	CACGTG	1 cut(s)	6933
BbsI	GAAGAC	3 cut(s)	1214, 4499, 5145
Bbv12I	GWGCWC	6 cut(s)	279, 4363, 5893, 6520, 6932, 7150
BbvCI	CCTCAGC	1 cut(s)	4167
BceAI	ACGGC	2 cut(s)	32, 284
BcgI	CGANNNNNNTGC	6 cut(s)	332, 366, 4195, 4229, 5987, 6021
BciVI	GTATCC	4 cut(s)	1408, 4552, 5923, 7084
BclI	TGATCA	3 cut(s)	3414, 5382, 6040
BcnI	CCSGG	1 cut(s)	129
BcuI	ACTAGT	1 cut(s)	199
BfuAI	ACCTGC	4 cut(s)	256, 525, 2459, 6175
BfuI	GTATCC	4 cut(s)	1408, 4552, 5923, 7084
BglII	AGATCT	7 cut(s)	2184, 2515, 3529, 4582, 4984, 5162, 5266
BmcAI	AGTACT	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	5146
BmeT110I	CYCGRG	1 cut(s)	7566
BmtI	GCTAGC	3 cut(s)	678, 4406, 5804
BoxI	GACNNNNGTC	2 cut(s)	2385, 6324
BpiI	GAAGAC	3 cut(s)	1214, 4499, 5145
BplI	GAGNNNNNCTC	2 cut(s)	3173, 3205
BpmI	CTGGAG	4 cut(s)	1770, 4694, 5907, 6962
Bpu10I	CCTNAGC	2 cut(s)	478, 4167
BpuEI	CTTGAG	5 cut(s)	1288, 1650, 1714, 5481, 6636
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	6860
BsaAI	YACGTR	1 cut(s)	6933
BsaBI	GATNNNNATC	3 cut(s)	1518, 3658, 4910
BsaHI	GRCGYC	2 cut(s)	398, 7494
BsaI	GGTCTC	2 cut(s)	606, 5737
BsaWI	WCCGGW	2 cut(s)	497, 7248
Bse118I	RCCGGY	1 cut(s)	1617
Bse3DI	GCAATG	6 cut(s)	2670, 3159, 3884, 3894, 7041, 7254
Bse8I	GATNNNNATC	3 cut(s)	1518, 3658, 4910
BseCI	ATCGAT	1 cut(s)	6860
BseJI	GATNNNNATC	3 cut(s)	1518, 3658, 4910
BseMI	GCAATG	6 cut(s)	2670, 3159, 3884, 3894, 7041, 7254
BseRI	GAGGAG	5 cut(s)	2296, 4010, 5233, 5432, 6680
BseSI	GKGCMC	7 cut(s)	56, 992, 1705, 2720, 5674, 6932, 7150
BseX3I	CGGCCG	1 cut(s)	297
BseYI	CCCAGC	3 cut(s)	2601, 4273, 4740
BsgI	GTGCAG	3 cut(s)	1458, 2493, 6318
Bsh1236I	CGCG	2 cut(s)	1192, 5085
Bsh1285I	CGRYCG	1 cut(s)	300
BshNI	GGYRCC	4 cut(s)	1702, 5671, 6065, 7349
BshVI	ATCGAT	1 cut(s)	6860
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	6 cut(s)	279, 4363, 5893, 6520, 6932, 7150
BsiHKCI	CYCGRG	1 cut(s)	7566
BsiSI	CCGG	7 cut(s)	5, 128, 262, 282, 498, 1618, 7249
BslFI	GGGAC	5 cut(s)	304, 1755, 2465, 6821, 7505
BsmFI	GGGAC	5 cut(s)	304, 1755, 2465, 6821, 7505
BsmI	GAATGC	9 cut(s)	433, 1984, 3243, 4030, 4591, 6193, 6703, 7285, 7336
Bso31I	GGTCTC	2 cut(s)	606, 5737
BsoBI	CYCGRG	1 cut(s)	7566
Bsp120I	GGGCCC	2 cut(s)	52, 2716
Bsp1407I	TGTACA	5 cut(s)	439, 1820, 3474, 3891, 5314
Bsp19I	CCATGG	1 cut(s)	2318
BspDI	ATCGAT	1 cut(s)	6860
BspFNI	CGCG	2 cut(s)	1192, 5085
BspHI	TCATGA	3 cut(s)	6118, 7135, 7240
BspMAI	CTGCAG	4 cut(s)	628, 1086, 4105, 6094
BspMI	ACCTGC	4 cut(s)	256, 525, 2459, 6175
BspOI	GCTAGC	3 cut(s)	678, 4406, 5804
BspT107I	GGYRCC	4 cut(s)	1702, 5671, 6065, 7349
BspTNI	GGTCTC	2 cut(s)	606, 5737
BsrDI	GCAATG	6 cut(s)	2670, 3159, 3884, 3894, 7041, 7254
BsrFI	RCCGGY	1 cut(s)	1617
BsrGI	TGTACA	5 cut(s)	439, 1820, 3474, 3891, 5314
BssAI	RCCGGY	1 cut(s)	1617
BssNI	GRCGYC	2 cut(s)	398, 7494
BssSI	CACGAG	3 cut(s)	1041, 7116, 7444
BssT1I	CCWWGG	6 cut(s)	815, 1368, 2318, 4126, 6009, 6523
Bst2BI	CACGAG	3 cut(s)	1041, 7116, 7444
Bst6I	CTCTTC	6 cut(s)	2445, 2856, 2932, 3196, 3663, 6568
BstACI	GRCGYC	2 cut(s)	398, 7494
BstAPI	GCANNNNNTGC	3 cut(s)	826, 2036, 3772
BstAUI	TGTACA	5 cut(s)	439, 1820, 3474, 3891, 5314
BstBAI	YACGTR	1 cut(s)	6933
BstDSI	CCRYGG	5 cut(s)	48, 1190, 2318, 3663, 5259
BstEII	GGTNACC	1 cut(s)	586
BstENI	CCTNNNNNAGG	2 cut(s)	1833, 2408
BstFNI	CGCG	2 cut(s)	1192, 5085
BstMCI	CGRYCG	1 cut(s)	300
BstNSI	RCATGY	6 cut(s)	1748, 4302, 4306, 4782, 5112, 6480
BstPAI	GACNNNNGTC	2 cut(s)	2385, 6324
BstPI	GGTNACC	1 cut(s)	586
BstSLI	GKGCMC	7 cut(s)	56, 992, 1705, 2720, 5674, 6932, 7150
BstUI	CGCG	2 cut(s)	1192, 5085
BstV2I	GAAGAC	3 cut(s)	1214, 4499, 5145
BstXI	CCANNNNNNTGG	1 cut(s)	6444
BstZI	CGGCCG	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	6860
BsuI	GTATCC	4 cut(s)	1408, 4552, 5923, 7084
BsuTUI	ATCGAT	1 cut(s)	6860
BtgI	CCRYGG	5 cut(s)	48, 1190, 2318, 3663, 5259
BtgZI	GCGATG	1 cut(s)	177
BtsI	GCAGTG	2 cut(s)	4968, 7167
BveI	ACCTGC	4 cut(s)	256, 525, 2459, 6175
CaiI	CAGNNNCTG	6 cut(s)	1090, 1219, 3856, 4487, 5174, 6689
CciI	TCATGA	3 cut(s)	6118, 7135, 7240
Cfr10I	RCCGGY	1 cut(s)	1617
Cfr42I	CCGCGG	1 cut(s)	1193
ClaI	ATCGAT	1 cut(s)	6860
CseI	GACGC	5 cut(s)	17, 23, 2028, 2664, 7502
CspCI	CAANNNNNGTGG	6 cut(s)	3698, 3733, 4641, 4676, 4725, 4760
DraI	TTTAAA	3 cut(s)	562, 792, 2529
DriI	GACNNNNNGTC	1 cut(s)	5146
EaeI	YGGCCR	6 cut(s)	297, 1619, 2617, 3370, 6431, 7523
EagI	CGGCCG	1 cut(s)	297
Eam1104I	CTCTTC	6 cut(s)	2445, 2856, 2932, 3196, 3663, 6568
Eam1105I	GACNNNNNGTC	1 cut(s)	5146
EarI	CTCTTC	6 cut(s)	2445, 2856, 2932, 3196, 3663, 6568
EciI	GGCGGA	2 cut(s)	34, 7593
Ecl136II	GAGCTC	2 cut(s)	277, 5891
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	6 cut(s)	815, 1368, 2318, 4126, 6009, 6523
Eco24I	GRGCYC	6 cut(s)	56, 279, 479, 2720, 3019, 5893
Eco31I	GGTCTC	2 cut(s)	606, 5737
Eco32I	GATATC	2 cut(s)	6864, 7428
Eco52I	CGGCCG	1 cut(s)	297
Eco53kI	GAGCTC	2 cut(s)	277, 5891
Eco57I	CTGAAG	4 cut(s)	672, 2064, 3044, 5141
Eco72I	CACGTG	1 cut(s)	6933
Eco88I	CYCGRG	1 cut(s)	7566
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	277, 5891
EcoNI	CCTNNNNNAGG	2 cut(s)	1833, 2408
EcoO109I	RGGNCCY	5 cut(s)	53, 1087, 2354, 2716, 2717
EcoO65I	GGTNACC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	3909
EcoRV	GATATC	2 cut(s)	6864, 7428
EcoT14I	CCWWGG	6 cut(s)	815, 1368, 2318, 4126, 6009, 6523
EcoT22I	ATGCAT	4 cut(s)	3066, 4030, 4304, 5037
EcoT38I	GRGCYC	6 cut(s)	56, 279, 479, 2720, 3019, 5893
ErhI	CCWWGG	6 cut(s)	815, 1368, 2318, 4126, 6009, 6523
FalI	AAGNNNNNCTT	4 cut(s)	5218, 5250, 6321, 6353
FaqI	GGGAC	5 cut(s)	304, 1755, 2465, 6821, 7505
FauI	CCCGC	1 cut(s)	1185
FauNDI	CATATG	4 cut(s)	3571, 4030, 5023, 5326
FbaI	TGATCA	3 cut(s)	3414, 5382, 6040
FblI	GTMKAC	4 cut(s)	446, 2169, 2678, 4159
FriOI	GRGCYC	6 cut(s)	56, 279, 479, 2720, 3019, 5893
GsaI	CCCAGC	3 cut(s)	2605, 4277, 4744
GsuI	CTGGAG	4 cut(s)	1770, 4694, 5907, 6962
HapII	CCGG	7 cut(s)	5, 128, 262, 282, 498, 1618, 7249
HgaI	GACGC	5 cut(s)	17, 23, 2028, 2664, 7502
Hin1I	GRCGYC	2 cut(s)	398, 7494
HincII	GTYRAC	6 cut(s)	447, 663, 2679, 4160, 6462, 6676
HindII	GTYRAC	6 cut(s)	447, 663, 2679, 4160, 6462, 6676
HindIII	AAGCTT	4 cut(s)	1655, 1690, 4518, 7484
HpaII	CCGG	7 cut(s)	5, 128, 262, 282, 498, 1618, 7249
Hpy99I	CGWCG	5 cut(s)	305, 400, 451, 1169, 2680
HpyCH4IV	ACGT	4 cut(s)	398, 4380, 5601, 6932
HpySE526I	ACGT	4 cut(s)	398, 4380, 5601, 6932
Hsp92I	GRCGYC	2 cut(s)	398, 7494
KpnI	GGTACC	1 cut(s)	6069
Ksp22I	TGATCA	3 cut(s)	3414, 5382, 6040
KspI	CCGCGG	1 cut(s)	1193
MaeII	ACGT	4 cut(s)	398, 4380, 5601, 6932
MfeI	CAATTG	4 cut(s)	1710, 3238, 4227, 4642
MlsI	TGGCCA	3 cut(s)	2619, 3372, 6433
MluI	ACGCGT	1 cut(s)	5083
MluNI	TGGCCA	3 cut(s)	2619, 3372, 6433
MlyI	GAGTC	9 cut(s)	383, 1464, 1657, 2447, 2674, 3386, 3677, 6334, 6986
Mox20I	TGGCCA	3 cut(s)	2619, 3372, 6433
Mph1103I	ATGCAT	4 cut(s)	3066, 4030, 4304, 5037
MroXI	GAANNNNTTC	1 cut(s)	493
MscI	TGGCCA	3 cut(s)	2619, 3372, 6433
MslI	CAYNNNNRTG	9 cut(s)	744, 1785, 2139, 3177, 3817, 6117, 6985, 7046, 7140
Msp20I	TGGCCA	3 cut(s)	2619, 3372, 6433
MspA1I	CMGCKG	8 cut(s)	359, 1192, 1463, 2732, 4013, 4054, 5006, 6940
MspI	CCGG	7 cut(s)	5, 128, 262, 282, 498, 1618, 7249
MunI	CAATTG	4 cut(s)	1710, 3238, 4227, 4642
Mva1269I	GAATGC	9 cut(s)	433, 1984, 3243, 4030, 4591, 6193, 6703, 7285, 7336
MvnI	CGCG	2 cut(s)	1192, 5085
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	2318
NdeI	CATATG	4 cut(s)	3571, 4030, 5023, 5326
NheI	GCTAGC	3 cut(s)	674, 4402, 5800
NmeAIII	GCCGAG	1 cut(s)	371
NsiI	ATGCAT	4 cut(s)	3066, 4030, 4304, 5037
NspI	RCATGY	6 cut(s)	1748, 4302, 4306, 4782, 5112, 6480
OliI	CACNNNNGTG	1 cut(s)	3817
PaeI	GCATGC	1 cut(s)	4306
PaeR7I	CTCGAG	1 cut(s)	7566
PagI	TCATGA	3 cut(s)	6118, 7135, 7240
PaqCI	CACCTGC	2 cut(s)	2459, 6175
PciI	ACATGT	2 cut(s)	4778, 6476
PctI	GAATGC	9 cut(s)	433, 1984, 3243, 4030, 4591, 6193, 6703, 7285, 7336
PdmI	GAANNNNTTC	1 cut(s)	493
PflFI	GACNNNGTC	2 cut(s)	1169, 2901
PflMI	CCANNNNNTGG	4 cut(s)	144, 1712, 4382, 6440
PleI	GAGTC	9 cut(s)	383, 1464, 1657, 2447, 2674, 3386, 3677, 6333, 6985
PmaCI	CACGTG	1 cut(s)	6933
PmlI	CACGTG	1 cut(s)	6933
PpsI	GAGTC	9 cut(s)	383, 1464, 1657, 2447, 2674, 3386, 3677, 6333, 6985
Ppu21I	YACGTR	1 cut(s)	6933
PpuMI	RGGWCCY	2 cut(s)	1087, 2354
PscI	ACATGT	2 cut(s)	4778, 6476
PshAI	GACNNNNGTC	2 cut(s)	2385, 6324
PshBI	ATTAAT	3 cut(s)	1425, 2700, 4454
Psp124BI	GAGCTC	2 cut(s)	279, 5893
Psp1406I	AACGTT	1 cut(s)	4380
Psp5II	RGGWCCY	2 cut(s)	1087, 2354
PspCI	CACGTG	1 cut(s)	6933
PspEI	GGTNACC	1 cut(s)	586
PspFI	CCCAGC	3 cut(s)	2601, 4273, 4740
PspOMI	GGGCCC	2 cut(s)	52, 2716
PspPPI	RGGWCCY	2 cut(s)	1087, 2354
PspXI	VCTCGAGB	1 cut(s)	7566
PsrI	GAACNNNNNNTAC	2 cut(s)	7647, 7679
PstI	CTGCAG	4 cut(s)	628, 1086, 4105, 6094
PstNI	CAGNNNCTG	6 cut(s)	1090, 1219, 3856, 4487, 5174, 6689
PsyI	GACNNNGTC	2 cut(s)	1169, 2901
PvuII	CAGCTG	6 cut(s)	359, 1463, 2732, 4054, 5006, 6940
RseI	CAYNNNNRTG	9 cut(s)	744, 1785, 2139, 3177, 3817, 6117, 6985, 7046, 7140
SacI	GAGCTC	2 cut(s)	279, 5893
SacII	CCGCGG	1 cut(s)	1193
SalI	GTCGAC	3 cut(s)	445, 2677, 4158
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	9 cut(s)	383, 1464, 1657, 2447, 2674, 3386, 3677, 6334, 6986
Sfr274I	CTCGAG	1 cut(s)	7566
Sfr303I	CCGCGG	1 cut(s)	1193
SgrBI	CCGCGG	1 cut(s)	1193
SlaI	CTCGAG	1 cut(s)	7566
SmiMI	CAYNNNNRTG	9 cut(s)	744, 1785, 2139, 3177, 3817, 6117, 6985, 7046, 7140
SmlI	CTYRAG	6 cut(s)	1303, 1665, 1693, 5496, 6651, 7566
SmoI	CTYRAG	6 cut(s)	1303, 1665, 1693, 5496, 6651, 7566
SpeI	ACTAGT	1 cut(s)	199
SphI	GCATGC	1 cut(s)	4306
SspI	AATATT	4 cut(s)	2919, 4111, 4473, 5660
SstI	GAGCTC	2 cut(s)	279, 5893
StyI	CCWWGG	6 cut(s)	815, 1368, 2318, 4126, 6009, 6523
TaiI	ACGT	4 cut(s)	401, 4383, 5604, 6935
TatI	WGTACW	8 cut(s)	433, 439, 1820, 2458, 3474, 3891, 4775, 5314
TauI	GCSGC	5 cut(s)	356, 950, 4016, 5044, 6911
TspGWI	ACGGA	6 cut(s)	198, 3342, 3610, 3652, 5276, 6989
Tth111I	GACNNNGTC	2 cut(s)	1169, 2901
Van91I	CCANNNNNTGG	4 cut(s)	144, 1712, 4382, 6440
VneI	GTGCAC	2 cut(s)	6928, 7146
VspI	ATTAAT	3 cut(s)	1425, 2700, 4454
XagI	CCTNNNNNAGG	2 cut(s)	1833, 2408
XbaI	TCTAGA	2 cut(s)	4987, 6731
XceI	RCATGY	6 cut(s)	1748, 4302, 4306, 4782, 5112, 6480
XcmI	CCANNNNNNNNNTGG	3 cut(s)	974, 3067, 6441
XhoI	CTCGAG	1 cut(s)	7566
XmiI	GTMKAC	4 cut(s)	446, 2169, 2678, 4159
XmnI	GAANNNNTTC	1 cut(s)	493
ZraI	GACGTC	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	435
Zsp2I	ATGCAT	4 cut(s)	3066, 4030, 4304, 5037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.