Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408019.1

Orthogroup ID

OG0003397

Physical Location & Seq

Genomic Coordinates Forward (+)

45 .. 1223

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgcctgatagagatcattcagactatatctggtcagaggctgattggccactgaacgggtgggctggttctgaatcaacgccagctccaacatatgtatctcctggtgttggtcttggattcaaacaaggcacacacgttggactgggtggagcaactgttggtgtaggatctttggcaaggtcagcaagagacttgagaggtggaggagcatttgggaatcaaggttatcctggaatgcgtgtgtctggtttaggttgggagactcgagaggactttgaggaagttgttgatccaccacctactgttgagaatgcaaacacaagggttttttccagtcacccatcaagacctttcttcttggttggttctagcaatacacacatttacttatgggagtttggcaaagacaaagctactgcaacttatggagttctgcctgctgcaaatgtccctccaccttatgctctggcatcgatatctgctttgcagtttgatcactgtggacacagatttgctaccgctgccttagatggaactgtatgcacatggcagctggaggtgggaggaaggagtaatattcgtcctacagaatcatctctatgctttaacagtcatgcatcgtacgtaatatataacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0009987 GO:0016043 GO:0019725 GO:0022607 GO:0030003 GO:0030004 GO:0030641 GO:0032991 GO:0034622 GO:0042592 GO:0043291 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045851 GO:0048878 GO:0050801 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071840 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rav1p_C WD40

Protein Analysis

214

Amino Acids

22.96

Weight (kDa)

5.57

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46560 AT2G46560 AT2G46560
fragaria_vesca	FvH4_7g16880 FvH4_7g16880 FvH4_7g16880 FvH4_7g16880
malus_domestica	MD01G1083800.v1.1
prunus_persica	Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360111
rosa_laevigata	RLG00000018213 RLG00000027832
rosa_multiflora	Rmu_co8378581.1_g000001 Rmu_co8408019.1_g000001 Rmu_sc0007813.1_g000007 Rmu_ssc0000368.1_g000041
rosa_roxburghii	Rroxscaffold_4G00296380
rosa_rugosa	Rorug01G0275200 Rorug01G0275300
rosa_samantha	Rh1AG289000 Rh1BG254500 Rh1CG272000 Rh1DG283600
rosa_wichuraiana	Rw1G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	178, 287
AcoI	YGGCCR	1 cut(s)	47
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	56, 110
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	103, 232
AluBI	AGCT	3 cut(s)	86, 416, 556
AluI	AGCT	3 cut(s)	86, 416, 556
Alw26I	GTCTC	2 cut(s)	186, 257
AlwI	GGATC	2 cut(s)	178, 287
AlwNI	CAGNNNCTG	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	443, 524, 553
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	267
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BalI	TGGCCA	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	430, 511, 565
BccI	CCATC	2 cut(s)	352, 527
BciT130I	CCWGG	2 cut(s)	105, 234
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	186, 257
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	3 cut(s)	444, 525, 554
BlsI	GCNGC	3 cut(s)	445, 526, 555
Bme1390I	CCNGG	2 cut(s)	105, 234
BmeT110I	CYCGRG	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	105, 234
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	482, 629
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	628
BsaBI	GATNNNNATC	1 cut(s)	12
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 110
Bse1I	ACTGG	2 cut(s)	150, 336
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	105, 234
BseCI	ATCGAT	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	56, 110
BseNI	ACTGG	2 cut(s)	150, 336
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	430, 511, 565
BshFI	GGCC	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	267
BsiWI	CGTACG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	56, 110
BsmAI	GTCTC	2 cut(s)	186, 257
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	2 cut(s)	243, 319
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	13, 170, 292, 496
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	476
BspPI	GGATC	2 cut(s)	178, 287
BsrI	ACTGG	2 cut(s)	150, 336
BssMI	GATC	4 cut(s)	13, 170, 292, 496
Bst2UI	CCWGG	2 cut(s)	105, 234
Bst4CI	ACNGT	5 cut(s)	160, 307, 503, 541, 614
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	84, 441
BstDEI	CTNAG	1 cut(s)	529
BstKTI	GATC	4 cut(s)	16, 173, 295, 499
BstMAI	GTCTC	2 cut(s)	186, 257
BstMBI	GATC	4 cut(s)	13, 170, 292, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 524
BstNI	CCWGG	2 cut(s)	105, 234
BstSCI	CCNGG	2 cut(s)	103, 232
BstSFI	CTRYAG	1 cut(s)	588
BstSNI	TACGTA	1 cut(s)	628
BstV1I	GCAGC	3 cut(s)	430, 511, 565
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	50, 499
Cac8I	GCNNGC	2 cut(s)	84, 441
CaiI	CAGNNNCTG	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	2 cut(s)	549, 617
CviJI	RGCY	6 cut(s)	41, 49, 65, 86, 416, 556
CviKI_1	RGCY	6 cut(s)	41, 49, 65, 86, 416, 556
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	4 cut(s)	15, 172, 294, 498
DpnII	GATC	4 cut(s)	13, 170, 292, 496
EaeI	YGGCCR	1 cut(s)	47
Eco105I	TACGTA	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	103, 232
EcoRV	GATATC	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	2 cut(s)	552, 620
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	548, 616
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	444, 525, 554
Fsp4HI	GCNGC	3 cut(s)	444, 525, 554
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	444, 525, 554
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	552, 620
HinfI	GANTC	5 cut(s)	74, 120, 220, 265, 593
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	3 cut(s)	22, 37, 73
Hpy188III	TCNNGA	2 cut(s)	269, 348
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	5 cut(s)	160, 307, 503, 541, 614
HpyCH4IV	ACGT	2 cut(s)	138, 627
HpyCH4V	TGCA	6 cut(s)	317, 422, 446, 490, 546, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 524
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	2 cut(s)	138, 627
Hsp92II	CATG	2 cut(s)	552, 620
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	13, 170, 292, 496
LmnI	GCTCC	3 cut(s)	91, 152, 209
Lsp1109I	GCAGC	3 cut(s)	430, 511, 565
LweI	GCATC	2 cut(s)	482, 629
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	138, 627
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	15, 172, 294, 498
MboI	GATC	4 cut(s)	13, 170, 292, 496
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	113, 121
MnlI	CCTC	8 cut(s)	31, 194, 200, 265, 274, 465, 553, 560
Mox20I	TGGCCA	1 cut(s)	49
Mph1103I	ATGCAT	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	2 cut(s)	609, 643
MslI	CAYNNNNRTG	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	49
MspA1I	CMGCKG	2 cut(s)	524, 556
MspR9I	CCNGG	2 cut(s)	105, 234
Mva1269I	GAATGC	2 cut(s)	243, 319
MvaI	CCWGG	2 cut(s)	105, 234
MwoI	GCNNNNNNNGC	2 cut(s)	185, 524
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	4 cut(s)	13, 170, 292, 496
NlaIII	CATG	2 cut(s)	552, 620
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	267
PctI	GAATGC	2 cut(s)	243, 319
PfeI	GAWTC	4 cut(s)	74, 120, 220, 593
Pfl23II	CGTACG	1 cut(s)	624
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	445, 526, 555
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	103, 232
PspGI	CCWGG	2 cut(s)	103, 232
PspLI	CGTACG	1 cut(s)	624
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	609, 643
SatI	GCNGC	3 cut(s)	444, 525, 554
Sau3AI	GATC	4 cut(s)	13, 170, 292, 496
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	105, 234
SfaNI	GCATC	2 cut(s)	482, 629
SfcI	CTRYAG	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	2 cut(s)	196, 267
SmoI	CTYRAG	2 cut(s)	196, 267
SnaBI	TACGTA	1 cut(s)	628
SsiI	CCGC	1 cut(s)	522
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	103, 232
TaaI	ACNGT	5 cut(s)	160, 307, 503, 541, 614
TaiI	ACGT	2 cut(s)	141, 630
TaqI	TCGA	2 cut(s)	268, 476
TfiI	GAWTC	4 cut(s)	74, 120, 220, 593
Tru1I	TTAA	2 cut(s)	609, 643
Tru9I	TTAA	2 cut(s)	609, 643
TscAI	CASTG	2 cut(s)	57, 506
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	443, 524, 553
Tsp45I	GTSAC	1 cut(s)	338
TspRI	CASTG	2 cut(s)	57, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.