Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003397

Physical Location & Seq

Genomic Coordinates Reverse (-)

26939999 .. 26940446

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTGAATAGGCTTTGTTCTTTTTGTTGGAGCCAGAATGCAGTGCTTGTAAACTCTGCAAAGATGGAGGCAATTGGATGGGCGAGCTCAGGGGATGGAATTATTGTCAGTGGAATTGAGGTGGTTTTGTGGAAAAGAAGTGGTAGGTCATGGGAAATTGCTTGGAAGTTTAAAGCAGACCAACCCCAGAGTTTGGTCTCTGCAACTTGGTCTGTTGAAGGACCTTTCGCAGCTGCTGCTTATCAAAGTAAATGGCTGATTGAAGGATTGTTGACAAAGGAGGCTAGCAAATGTGTGCTAATAAGCCAGCGAGATGCAGTGGTTTCCTCTTGCTTCGGGCTTGAACTTGCCATCATGTTTGCTGTGTGCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0009987 GO:0016043 GO:0019725 GO:0022607 GO:0030003 GO:0030004 GO:0030641 GO:0032991 GO:0034622 GO:0042592 GO:0043291 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045851 GO:0048878 GO:0050801 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071840 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rav1p_C WD40

Protein Analysis

126

Amino Acids

13.61

Weight (kDa)

7.58

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46560 AT2G46560 AT2G46560
fragaria_vesca	FvH4_7g16880 FvH4_7g16880 FvH4_7g16880 FvH4_7g16880
malus_domestica	MD01G1083800.v1.1
prunus_persica	Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360111
rosa_laevigata	RLG00000018213 RLG00000027832
rosa_multiflora	Rmu_co8378581.1_g000001 Rmu_co8408019.1_g000001 Rmu_sc0007813.1_g000007 Rmu_ssc0000368.1_g000041
rosa_roxburghii	Rroxscaffold_4G00296380
rosa_rugosa	Rorug01G0275200 Rorug01G0275300
rosa_samantha	Rh1AG289000 Rh1BG254500 Rh1CG272000 Rh1DG283600
rosa_wichuraiana	Rw1G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	7, 218, 263, 344
AluBI	AGCT	2 cut(s)	87, 233
AluI	AGCT	2 cut(s)	87, 233
Alw21I	GWGCWC	2 cut(s)	89, 371
Alw26I	GTCTC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	230, 233, 236
AspS9I	GGNCC	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	89, 371
BbvI	GCAGC	3 cut(s)	220, 223, 242
BccI	CCATC	4 cut(s)	58, 72, 89, 359
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	231, 234, 237
BlsI	GCNGC	3 cut(s)	232, 235, 238
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	83, 100
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	220, 223, 242
BsiHKAI	GWGCWC	2 cut(s)	89, 371
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	89, 371
BspCNI	CTCAG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	85, 286, 308
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	83, 100
BstMAI	GTCTC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	220, 223, 242
BtsCI	GGATG	2 cut(s)	83, 100
BtsI	GCAGTG	2 cut(s)	48, 324
BtsIMutI	CAGTG	3 cut(s)	48, 115, 324
Cac8I	GCNNGC	3 cut(s)	85, 286, 308
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	2 cut(s)	150, 355
CviJI	RGCY	8 cut(s)	13, 33, 87, 233, 256, 284, 306, 340
CviKI_1	RGCY	8 cut(s)	13, 33, 87, 233, 256, 284, 306, 340
DdeI	CTNAG	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	89
FaeI	CATG	2 cut(s)	153, 358
FaiI	YATR	2 cut(s)	151, 356
FatI	CATG	2 cut(s)	149, 354
Fnu4HI	GCNGC	3 cut(s)	231, 234, 237
FokI	GGATG	2 cut(s)	90, 107
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	231, 234, 237
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	231, 234, 237
Hin1II	CATG	2 cut(s)	153, 358
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	52, 273
Hpy8I	GTNNAC	2 cut(s)	52, 273
HpyAV	CCTTC	2 cut(s)	212, 257
HpyCH4V	TGCA	4 cut(s)	41, 59, 203, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	153, 358
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	47, 75, 200, 320
Lsp1109I	GCAGC	3 cut(s)	220, 223, 242
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	285
MboII	GAAGA	1 cut(s)	363
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	89, 371
MluCI	AATT	4 cut(s)	72, 99, 114, 156
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	61, 112, 274, 337
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	236
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	153, 358
NlaIV	GGNNCC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	232, 235, 238
PpuMI	RGGWCCY	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	231, 234, 237
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	89, 371
SetI	ASST	5 cut(s)	89, 123, 149, 226, 235
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	4 cut(s)	72, 99, 114, 156
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	89
TasI	AATT	4 cut(s)	72, 99, 114, 156
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	48, 115, 324
TseI	GCWGC	3 cut(s)	230, 233, 236
TspRI	CASTG	3 cut(s)	48, 115, 324
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	221
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.