Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378581.1

Orthogroup ID

OG0003397

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 840

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

ctttggagtacctttcatctcccacaaccattcttggagacacagatctagggactgtatcagatattggggattttgagaagctaaatggaattctgaatccttctccaaataattcttcaaattggttatcaagtactgtggcattccgtgtggagttccttgccagattagatttggcacttcaatacttatcaacattggtaagagagcatccaagttgggcagatactgttgttgcaccttccagagctatttcacatataaatgagtgcgagaatcatgaacatgtaaaagttcttgggagtttccgccagaaattatacacagcacttcatcatttggagcagaagttttcagtggttccttttcatctcatcagcatggtcttgctctcactgtacaatcgtgggctatggtttgttgggtacgaaatattacattcatatacttctcaagatcaagatctcaatgaaagccaaatatataacttgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0009987 GO:0016043 GO:0019725 GO:0022607 GO:0030003 GO:0030004 GO:0030641 GO:0032991 GO:0034622 GO:0042592 GO:0043291 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045851 GO:0048878 GO:0050801 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071840 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rav1p_C WD40

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

5.35

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46560 AT2G46560 AT2G46560
fragaria_vesca	FvH4_7g16880 FvH4_7g16880 FvH4_7g16880 FvH4_7g16880
malus_domestica	MD01G1083800.v1.1
prunus_persica	Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360111
rosa_laevigata	RLG00000018213 RLG00000027832
rosa_multiflora	Rmu_co8378581.1_g000001 Rmu_co8408019.1_g000001 Rmu_sc0007813.1_g000007 Rmu_ssc0000368.1_g000041
rosa_roxburghii	Rroxscaffold_4G00296380
rosa_rugosa	Rorug01G0275200 Rorug01G0275300
rosa_samantha	Rh1AG289000 Rh1BG254500 Rh1CG272000 Rh1DG283600
rosa_wichuraiana	Rw1G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	4 cut(s)	10, 138, 403, 430
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	122, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	2 cut(s)	84, 253
AluI	AGCT	2 cut(s)	84, 253
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	49
BglII	AGATCT	2 cut(s)	45, 465
BmcAI	AGTACT	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	365
BmsI	GCATC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse8I	GATNNNNATC	1 cut(s)	464
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	45, 459, 465
BspACI	CCGC	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	401
BssMI	GATC	3 cut(s)	45, 459, 465
Bst4CI	ACNGT	4 cut(s)	57, 141, 234, 401
BstAUI	TGTACA	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	3 cut(s)	48, 462, 468
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	45, 459, 465
BstNSI	RCATGY	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	45, 465
BstYI	RGATCY	2 cut(s)	45, 465
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	365, 397
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	282
Csp6I	GTAC	4 cut(s)	9, 137, 402, 429
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	3 cut(s)	283, 289, 384
CviJI	RGCY	4 cut(s)	84, 253, 414, 479
CviKI_1	RGCY	4 cut(s)	84, 253, 414, 479
CviQI	GTAC	4 cut(s)	9, 137, 402, 429
DpnI	GATC	3 cut(s)	47, 461, 467
DpnII	GATC	3 cut(s)	45, 459, 465
EciI	GGCGGA	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	286, 292, 387
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	282, 288, 383
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	49
Hin1II	CATG	3 cut(s)	286, 292, 387
HinfI	GANTC	2 cut(s)	99, 279
Hpy188I	TCNGA	2 cut(s)	63, 98
Hpy188III	TCNNGA	4 cut(s)	248, 283, 457, 463
HpyAV	CCTTC	2 cut(s)	113, 254
HpyCH4III	ACNGT	4 cut(s)	57, 141, 234, 401
HpyCH4V	TGCA	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	286, 292, 387
Kzo9I	GATC	3 cut(s)	45, 459, 465
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	3 cut(s)	180, 261, 328
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	49
MalI	GATC	3 cut(s)	47, 461, 467
MboI	GATC	3 cut(s)	45, 459, 465
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	2 cut(s)	45, 465
MluCI	AATT	4 cut(s)	92, 114, 123, 319
MslI	CAYNNNNRTG	3 cut(s)	266, 287, 382
Mva1269I	GAATGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	45, 459, 465
NlaIII	CATG	3 cut(s)	286, 292, 387
NlaIV	GGNNCC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	282
PciI	ACATGT	1 cut(s)	288
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	99, 279
PscI	ACATGT	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	45, 465
RsaI	GTAC	4 cut(s)	10, 138, 403, 430
RsaNI	GTAC	4 cut(s)	9, 137, 402, 429
RseI	CAYNNNNRTG	3 cut(s)	266, 287, 382
Sau3AI	GATC	3 cut(s)	45, 459, 465
ScaI	AGTACT	1 cut(s)	138
SetI	ASST	4 cut(s)	14, 86, 246, 255
SfaNI	GCATC	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	266, 287, 382
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	92, 114, 123, 319
SsiI	CCGC	1 cut(s)	312
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	1 cut(s)	49
TaaI	ACNGT	4 cut(s)	57, 141, 234, 401
TasI	AATT	4 cut(s)	92, 114, 123, 319
TatI	WGTACW	2 cut(s)	136, 401
TfiI	GAWTC	2 cut(s)	99, 279
TscAI	CASTG	2 cut(s)	365, 404
TspDTI	ATGAA	6 cut(s)	5, 299, 325, 361, 434, 488
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	365, 404
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.