Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007813.1

Orthogroup ID

OG0003397

Physical Location & Seq

Genomic Coordinates Forward (+)

22298 .. 32194

Gene Structure 9897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007813.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6193 bp

atggtagactcggacacacccacctatcatctacttcctccaactcaaactcaccattccggactctcccctatcaccatggaccccactccccatcttcctctccagatccttagatccgacccgaccccttccgcccctaaccgatccgacccgcccggatccgccatcgactggctcccggacttcctcgacctctcatgggcctcctacggcgcctcctccctcctcgtcatctcccacttcccttcccccctctccgaaaacgaaaccgtgatcggtcccattttccggcaggttttcgagctctccggcgacccctcctcggccgtcagagccgtggcttggtcgccggtcatgccgtctctcggtgaggttgcggccgcggctgagaattgcgtttgggtgttctcgcatgattcggcgagctccaaaggttctttttgttggagccagaatgcagtgcttgtaaactctgcaaaggtggaggcaattggatggacgggctcaggggatggaataattgccagtggcgttgaggttgttctgtggaaaagaagtggtaggtcatgggaaattgcttggaagtttaaagcagaccaaccccagagtttggtctctgcaacttggtctgttgaaggaccttttgcaactgctgcttatcagagtaaatggctgattgaaggtttgttgactaaggaggctagcaaatgtgtgctagtaacccagcgagatggcaaatctgagtttgttaaatctgagctacgacatcctcttcctgtctcaatgattcagtggaggccattaactggaaaacctttaagcagagatgcaaaacatccatcaaggcatgtgctactcactagttgcttagatggaactgtcaggttatggtgcgaggttgatgacggacgggcaagaaaagttgctaaggacatcaatgatcacaaaaccacgaggtggtcattttctgtagcctctgtaattgagataaaccaggcactgaatgggattctgggaattgatatttatgtgacgtgggccatagaaactgggggtctaaacaaagctagtgtgggggctaaaaaattattctctgcaaacggttatgaacatgaccagctcggtaattgtgagtggttagttgggttcggtcctggaatgctagtgaagttttgggctttacactgtctcgatgatgtctccccagtaagatttccccgggttacattatggaagacacaagaactacaagtcctggaagggggacatgttcataggactggactttcaaattataatgatagaataccacttaataaagttgtgatcttgaggaactgcatgtctggtccaccagtggtctgctctttgattcagttgttaccttgcaattcattggtttggtcactgttgtatactcaatcttcaaataatgtagaggatcttaccctcaataaacctggtatggagaacactttatcatgctcagctgatgggatcttgaatttggatggtcatgctggaagaatcttacaagtagcagtgcatccttatagttgtgaggttgaacttgctgtctccttagattctgatggattgcttcttttttggtttttctctaccatttccaactatattttgggccgtccaacactagtgccaacatgggatatctgtgggaagcttgcaactcaaagttcatcttccaggtattcaagcgtgaggtgggcaccagcaatactaaatgaagtagctgttcttcttatgggacatgctggaggaattgattgctttattgtaaaaattcatcaggatgaggaagaaattatagaatgtcactacttatgcactataccttttacaggtcatggtccttatgaggatgggcccaacagtatctctacaattccttttcctccgacttgtcataaaactctaagatgtagtaaatttatgcttttgggtgtatggatgaatgggtttcaagctctttcatgggaaatcactttacatacgtttgatttatccggaagctactgtgactgtgattttgagacgggaaatggtcctgaaagtatgtggggatttgaaggtactttcaccaatgtaagatattgtctaaaagtaaacgcttgctcatcgcagatacctgatccatacatccatgatgaggttacaagttttgctgtggtctgtcagggtagtttgatgcgtatagaaaaaaatttgggtcctactattgatcaatgctctagttgtcctgcttatttaatggctacaggctgctctgatggttctttgaaattgtggaggagtagaattgctaaactatcaactcctaacattccatgggaacttgtgggtatgtttgtggcacataaaggccctattagcactgtatgcttgtctgaatgtggtaggaagattgcaaccatctgcaaggatttttcttcaaatgcagttggcactcttcggatatgggatcctatacatcttgctggtgcagggtcatttgtgttagaagatacaatatcctttgatcaagaacttgttgctttgaattggctacctttgggaaatggtcagttactactgggagtttgcatgctgaatcagtttcgagtatattctgttgagcgttgtggtggtcagactttgttaaaccctgaaaaatcagtgaaaaagaacatctgggtctgcattgcctctactcatactttccctcccatttgtgacttcttttggggacccagagcaacagctgtctttgttcataagagttacttttgtgtaaatagtcagtggttgttccttgtagataagaaacatcttgctaatggtcagtcaaatgacatggcaaaaaattgcatggattctgcaggtggaatgaaagaagacactagttcgattttctttgattgtgaacttcaacaatttgataaaacattacttgacgagagtagaagagattgcaagtctggtacaccattcaagactgatttgaaaaaggactatctattgagcagcttgtttgtagcaaggtctcaattggattgtggttggggtaccaagctaggtttatggacaatgcttgaagtggtggagaatttaagtggatctctgccagtttaccacccagaggccctctttatgaatatctattcaggaaattggaagcgtgcgtatattgcattgaggcatctcaatgattttctctcttctgagtcttcttctgggagcaagcattacccttcaaagtcgagcattttcgttccacagattttgttgtcaacttttcttgatgggattatctcaatagattcaaacgataaaggatttcaatggagtggtgatgcagtcacttcatcttctcagttgcagagagactctggtcagtttacatacgactcgtatgcttccaataatttgttcagttcatcttcaacaaagtatggacttgttgactttgttgagcatctggagaagttgtatgaattagcagctataaccaacattgagaggatgcagattcttgctatttttgatcttcttaatgaaatgactaattcaaactctggttctgcgtatgaaagtctcgatgaacctggacagaggttctggattgcattgaggtttcagcaactacattttgtccggaagtttggtagatcagtatccgtggaggaattggttgtggactctaagttgattggatgggcctaccactctgattgccaggaaaatttgtttggatctttcctacccaatgaaccgtcttggcaagaaatgcggaatttgggtgtaggattttggtttacaaatacagcacaattgcgttcaaggatggagaaactagcaaggttgcaatatctgaagaggagggatcctaaggattgtgcattgctatatattgcactgaatagaattcaagttctgaccggacttttcaaaattagcaaggatgagaaggacaagcccttagtcgcatttctttcacgcaattttcaggaagagaaaaataaggcagctgccttgaagaacgcatatgtcttgatgggtaggcatcaactggagttggctgttgctttctttctgcttggaggtgatacttcttctgctgtcagtatttgtgcaaagaaccttggggatgaacagcttgcagttgtaatttgccggcttactgaagggcgtggtggaccattagagagacacctaatttcaaagtctctactaccatttgcaattgagaggggtgactcctggttagcaagccttctggagtgggagctagggaactactgtcaatcttttataagcatgcttggactccagataaattctgcaactgagatgtatgcaactttgtccagtggtgttactttttcagacccaaatgttggtctctattgtatattgctagcaaccaagaacagcatgaggaatgctgtaggggagcggaatactgcaatcctgagtaggtgggcattattcatgacagccactgccttaaagagatgtggacttccacttgaagctttggagtacctttcatctcccacaaccattcttggagacacagatctagggactgtatcagatattggggattttgagaagctaaatggaattctgaatccttctccaaataattcttcaaattggttatcaagtactgtggcattccgtgtggagttccttgccagattagatttggcacttcaatacttatcaacattggtaagagagcatccaagttgggcagatactgttgttgcaccttccagagctatttcacatataaatgagtgcgagaatcatgaacatgtaaaagttcttgggagtttccaccagaaattatacacagcacttcatcatttggagcagaagttttcagtggttccttttcatctcatcagcatggtcttgctctcactgtacaatcgtgggctatggtttgttgggtacgaaatattacattcatatacttctcaagatcaagatctcaatgaaagccaaatagttagatccctattgcatcctcttatgcataagcaacttttgaaggctaccagagaaacttctcttttattttcacgcgttattgctgcctgcagtataacttgctctaaactgaagtcagattgtttagaaaacaatgtgtctggtgaaagtggatcttcaagctcaaacgcttgggagtattactttcaaggtcttatcctgtcacttcggagtttaaggagtgctttgcaaattatttctgtctcatctactgaagacctcatcatgaaaccccttatcatcattgattggattgagtattatgtacagtttgcttgtgcatggcttcaaaaaaactcaaaagttctcttcctattaatgcaaccacttctgatcacatttaccaatgggcatacaccttatgaagttgatttgatggatctgaagaaaatcctcccccagattgcagaatcggtgacccaaaattctttgattgataatgtatgcacaggccttcaggattctcaaggtacagatgtagcacatttaattccagaagatgaaagatggcagatcacaggggcttgtttatggcaacacatatccagactaatgaaacataagataggtatgttatcttataaacttgatgaaggctgtatttctggtgttcccgatggaaaacatttctcatcggtgccttgctctgaaaatttgggtcctgatgacaacagaactgaagaagtgattgggttggtttcattgtccttggttaaattattaaagaccacacttgcacatgtttcttcttatcatgtgatgcgtctggcatcacatctgcagcataagatggataatgggttgcatgtaatgactcttgtttggttaggagaatataaccagtctcagaccagaggcctcaatcagcatttgaatcaggacatgctcaaattggagacaataggtgaaaaacatggatctgacatattatgggatatttgtgcagatcctaaaataatatctgagagtttcactcaggaaaaaataaactggtctcactcccttgatcataaaccgtctaaaggatggaataacatatatagaggcatcacaattgtagatgagactgaggaaactcataaccatgaacttacacctaagagtacttctgccaatagtgaagctggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0009987 GO:0016043 GO:0019725 GO:0022607 GO:0030003 GO:0030004 GO:0030641 GO:0032991 GO:0034622 GO:0042592 GO:0043291 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045851 GO:0048878 GO:0050801 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071840 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rav1p_C WD40

Protein Analysis

2064

Amino Acids

229.71

Weight (kDa)

5.91

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46560 AT2G46560 AT2G46560
fragaria_vesca	FvH4_7g16880 FvH4_7g16880 FvH4_7g16880 FvH4_7g16880
malus_domestica	MD01G1083800.v1.1
prunus_persica	Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1 Prupe.2G190800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360111
rosa_laevigata	RLG00000018213 RLG00000027832
rosa_multiflora	Rmu_co8378581.1_g000001 Rmu_co8408019.1_g000001 Rmu_sc0007813.1_g000007 Rmu_ssc0000368.1_g000041
rosa_roxburghii	Rroxscaffold_4G00296380
rosa_rugosa	Rorug01G0275200 Rorug01G0275300
rosa_samantha	Rh1AG289000 Rh1BG254500 Rh1CG272000 Rh1DG283600
rosa_wichuraiana	Rw1G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1299, 4316, 5646
AarI	CACCTGC	1 cut(s)	2873
Acc36I	ACCTGC	2 cut(s)	286, 2873
Acc65I	GGTACC	1 cut(s)	3068
AccB1I	GGYRCC	4 cut(s)	215, 1732, 3068, 5701
AccB7I	CCANNNNNTGG	5 cut(s)	174, 613, 809, 960, 4400
AccBSI	CCGCTC	1 cut(s)	4459
AccI	GTMKAC	2 cut(s)	6, 1418
AccII	CGCG	2 cut(s)	386, 5100
AccIII	TCCGGA	3 cut(s)	59, 2030, 3657
AciI	CCGC	8 cut(s)	135, 155, 165, 380, 384, 386, 3793, 4459
AcoI	YGGCCR	2 cut(s)	327, 381
AcuI	CTGAAG	7 cut(s)	3896, 4206, 5156, 5298, 5468, 5504, 5763
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	960
AflIII	ACRYGT	4 cut(s)	1270, 4825, 5098, 5803
AhlI	ACTAGT	3 cut(s)	863, 1657, 2903
AjiI	CACGTC	1 cut(s)	1038
AjnI	CCWGG	8 cut(s)	996, 1156, 1257, 1462, 1709, 3607, 3738, 4262
AjuI	GAANNNNNNNTTGG	8 cut(s)	3416, 3448, 3735, 3767, 4639, 4671, 5736, 5768
AloI	GAACNNNNNNTCC	2 cut(s)	1239, 1271
Alw21I	GWGCWC	2 cut(s)	309, 431
AlwNI	CAGNNNCTG	3 cut(s)	1003, 4505, 4769
Ama87I	CYCGRG	1 cut(s)	1221
Aor13HI	TCCGGA	3 cut(s)	59, 2030, 3657
ApaI	GGGCCC	1 cut(s)	1893
ApeKI	GCWGC	8 cut(s)	656, 2286, 3027, 3503, 4028, 4031, 5108, 5845
ArsI	GACNNNNNNTTYG	2 cut(s)	2036, 2068
AseI	ATTAAT	1 cut(s)	5381
Asp718I	GGTACC	1 cut(s)	3068
AspLEI	GCGC	1 cut(s)	218
AsuC2I	CCSGG	4 cut(s)	159, 182, 1222, 1223
AsuNHI	GCTAGC	2 cut(s)	704, 4420
AvaI	CYCGRG	1 cut(s)	1221
AxyI	CCTNAGG	1 cut(s)	3891
BaeGI	GKGCMC	2 cut(s)	1735, 1893
BaeI	ACNNNNGTAYC	4 cut(s)	4758, 4791, 5526, 5559
BamHI	GGATCC	3 cut(s)	161, 2485, 3886
BanI	GGYRCC	4 cut(s)	215, 1732, 3068, 5701
BanII	GRGCYC	4 cut(s)	309, 431, 509, 1893
BarI	GAAGNNNNNNTAC	2 cut(s)	1746, 1778
BauI	CACGAG	1 cut(s)	955
BbsI	GAAGAC	4 cut(s)	1244, 2904, 3222, 5286
Bbv12I	GWGCWC	2 cut(s)	309, 431
BbvI	GCAGC	8 cut(s)	643, 2273, 3039, 3515, 4018, 4040, 5095, 5857
BceAI	ACGGC	5 cut(s)	229, 314, 323, 346, 1632
BcgI	CGANNNNNNTGC	2 cut(s)	3398, 3432
BciT130I	CCWGG	8 cut(s)	998, 1158, 1259, 1464, 1711, 3609, 3740, 4264
BciVI	GTATCC	1 cut(s)	3688
BclI	TGATCA	5 cut(s)	943, 2245, 2542, 5397, 6070
BcnI	CCSGG	4 cut(s)	159, 182, 1222, 1223
BcuI	ACTAGT	3 cut(s)	863, 1657, 2903
BfmI	CTRYAG	6 cut(s)	972, 2280, 2880, 4449, 5113, 5843
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	2 cut(s)	286, 2873
BfuI	GTATCC	1 cut(s)	3688
BglII	AGATCT	2 cut(s)	4582, 5002
BlpI	GCTNAGC	1 cut(s)	1489
BmcAI	AGTACT	2 cut(s)	4675, 6169
BmeT110I	CYCGRG	1 cut(s)	1221
BmgBI	CACGTC	1 cut(s)	1038
BmrI	ACTGGG	3 cut(s)	1062, 1202, 2606
BmtI	GCTAGC	2 cut(s)	708, 4424
BmuI	ACTGGG	3 cut(s)	1062, 1202, 2606
BoxI	GACNNNNGTC	1 cut(s)	3393
BpiI	GAAGAC	4 cut(s)	1244, 2904, 3222, 5286
BplI	GAGNNNNNCTC	2 cut(s)	6022, 6054
BpmI	CTGGAG	6 cut(s)	89, 1800, 3503, 4094, 4301, 4316
Bpu10I	CCTNAGC	2 cut(s)	508, 930
Bpu1102I	GCTNAGC	1 cut(s)	1489
BpuEI	CTTGAG	3 cut(s)	1354, 4977, 5514
BpuMI	CCSGG	4 cut(s)	159, 182, 1222, 1223
BsaBI	GATNNNNATC	2 cut(s)	3676, 5001
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	4 cut(s)	622, 3051, 4409, 6063
BsaWI	WCCGGW	4 cut(s)	59, 2030, 3657, 3941
BsaXI	ACNNNNNCTCC	8 cut(s)	203, 233, 2710, 2740, 3476, 3506, 4874, 4904
Bse118I	RCCGGY	2 cut(s)	352, 4176
Bse21I	CCTNAGG	1 cut(s)	3891
Bse3DI	GCAATG	2 cut(s)	2703, 3902
Bse8I	GATNNNNATC	2 cut(s)	3676, 5001
BseAI	TCCGGA	3 cut(s)	59, 2030, 3657
BseBI	CCWGG	8 cut(s)	998, 1158, 1259, 1464, 1711, 3609, 3740, 4264
BseJI	GATNNNNATC	2 cut(s)	3676, 5001
BseMI	GCAATG	2 cut(s)	2703, 3902
BseRI	GAGGAG	5 cut(s)	211, 218, 313, 2329, 3895
BseSI	GKGCMC	2 cut(s)	1735, 1893
BseX3I	CGGCCG	2 cut(s)	327, 381
BseXI	GCAGC	8 cut(s)	643, 2273, 3039, 3515, 4018, 4040, 5095, 5857
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	2 cut(s)	2526, 6027
Bsh1236I	CGCG	2 cut(s)	386, 5100
Bsh1285I	CGRYCG	2 cut(s)	330, 384
BshNI	GGYRCC	4 cut(s)	215, 1732, 3068, 5701
BsiEI	CGRYCG	2 cut(s)	330, 384
BsiHKAI	GWGCWC	2 cut(s)	309, 431
BsiHKCI	CYCGRG	1 cut(s)	1221
BslFI	GGGAC	5 cut(s)	267, 1281, 1785, 2763, 4603
BsmBI	CGTCTC	2 cut(s)	369, 2051
BsmFI	GGGAC	5 cut(s)	267, 1281, 1785, 2763, 4603
BsmI	GAATGC	4 cut(s)	463, 1167, 4450, 4682
Bso31I	GGTCTC	4 cut(s)	622, 3051, 4409, 6063
BsoBI	CYCGRG	1 cut(s)	1221
Bsp120I	GGGCCC	1 cut(s)	1889
Bsp1286I	GDGCHC	5 cut(s)	309, 431, 509, 1735, 1893
Bsp13I	TCCGGA	3 cut(s)	59, 2030, 3657
Bsp1407I	TGTACA	2 cut(s)	4938, 5329
Bsp1720I	GCTNAGC	1 cut(s)	1489
Bsp19I	CCATGG	2 cut(s)	78, 2351
BspACI	CCGC	8 cut(s)	135, 155, 165, 380, 384, 386, 3793, 4459
BspEI	TCCGGA	3 cut(s)	59, 2030, 3657
BspFNI	CGCG	2 cut(s)	386, 5100
BspHI	TCATGA	3 cut(s)	4494, 4819, 5289
BspMAI	CTGCAG	3 cut(s)	2884, 5117, 5847
BspMI	ACCTGC	2 cut(s)	286, 2873
BspOI	GCTAGC	2 cut(s)	708, 4424
BspT107I	GGYRCC	4 cut(s)	215, 1732, 3068, 5701
BspTNI	GGTCTC	4 cut(s)	622, 3051, 4409, 6063
BsrBI	CCGCTC	1 cut(s)	4459
BsrDI	GCAATG	2 cut(s)	2703, 3902
BsrFI	RCCGGY	2 cut(s)	352, 4176
BsrGI	TGTACA	2 cut(s)	4938, 5329
BssAI	RCCGGY	2 cut(s)	352, 4176
BssNAI	GTATAC	1 cut(s)	1419
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	955
BssT1I	CCWWGG	4 cut(s)	78, 2351, 4144, 5772
Bst1107I	GTATAC	1 cut(s)	1419
Bst2BI	CACGAG	1 cut(s)	955
Bst2UI	CCWGG	8 cut(s)	998, 1158, 1259, 1464, 1711, 3609, 3740, 4264
Bst6I	CTCTTC	7 cut(s)	780, 2478, 2962, 3226, 3872, 4008, 5378
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	3 cut(s)	656, 2403, 3790
BstAUI	TGTACA	2 cut(s)	4938, 5329
BstDSI	CCRYGG	5 cut(s)	78, 339, 384, 2351, 3681
BstEII	GGTNACC	1 cut(s)	5479
BstENI	CCTNNNNNAGG	1 cut(s)	1863
BstFNI	CGCG	2 cut(s)	386, 5100
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstMCI	CGRYCG	2 cut(s)	330, 384
BstMWI	GCNNNNNNNGC	8 cut(s)	335, 358, 386, 656, 2394, 2403, 3191, 3790
BstNI	CCWGG	8 cut(s)	998, 1158, 1259, 1464, 1711, 3609, 3740, 4264
BstPAI	GACNNNNGTC	1 cut(s)	3393
BstPI	GGTNACC	1 cut(s)	5479
BstSFI	CTRYAG	6 cut(s)	972, 2280, 2880, 4449, 5113, 5843
BstSLI	GKGCMC	2 cut(s)	1735, 1893
BstUI	CGCG	2 cut(s)	386, 5100
BstV1I	GCAGC	8 cut(s)	643, 2273, 3039, 3515, 4018, 4040, 5095, 5857
BstV2I	GAAGAC	4 cut(s)	1244, 2904, 3222, 5286
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstZ17I	GTATAC	1 cut(s)	1419
BstZI	CGGCCG	2 cut(s)	327, 381
Bsu36I	CCTNAGG	1 cut(s)	3891
BsuI	GTATCC	1 cut(s)	3688
BtgI	CCRYGG	5 cut(s)	78, 339, 384, 2351, 3681
BtgZI	GCGATG	1 cut(s)	2127
BtrI	CACGTC	1 cut(s)	1038
BtsI	GCAGTG	3 cut(s)	468, 1551, 4503
BveI	ACCTGC	2 cut(s)	286, 2873
CaiI	CAGNNNCTG	3 cut(s)	1003, 4505, 4769
CciI	TCATGA	3 cut(s)	4494, 4819, 5289
CciNI	GCGGCCGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	2 cut(s)	352, 4176
Cfr42I	CCGCGG	1 cut(s)	387
Cfr9I	CCCGGG	1 cut(s)	1221
CseI	GACGC	1 cut(s)	5816
CsiI	ACCWGGT	1 cut(s)	1462
CspCI	CAANNNNNGTGG	6 cut(s)	3267, 3302, 3716, 3751, 4659, 4694
DinI	GGCGCC	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	592
DraIII	CACNNNGTG	1 cut(s)	960
EaeI	YGGCCR	2 cut(s)	327, 381
EagI	CGGCCG	2 cut(s)	327, 381
Eam1104I	CTCTTC	7 cut(s)	780, 2478, 2962, 3226, 3872, 4008, 5378
EarI	CTCTTC	7 cut(s)	780, 2478, 2962, 3226, 3872, 4008, 5378
EciI	GGCGGA	2 cut(s)	124, 154
Ecl136II	GAGCTC	2 cut(s)	307, 429
EclXI	CGGCCG	2 cut(s)	327, 381
Eco130I	CCWWGG	4 cut(s)	78, 2351, 4144, 5772
Eco147I	AGGCCT	2 cut(s)	5517, 5922
Eco24I	GRGCYC	4 cut(s)	309, 431, 509, 1893
Eco31I	GGTCTC	4 cut(s)	622, 3051, 4409, 6063
Eco32I	GATATC	1 cut(s)	1675
Eco52I	CGGCCG	2 cut(s)	327, 381
Eco53kI	GAGCTC	2 cut(s)	307, 429
Eco57I	CTGAAG	7 cut(s)	3896, 4206, 5156, 5298, 5468, 5504, 5763
Eco81I	CCTNAGG	1 cut(s)	3891
Eco88I	CYCGRG	1 cut(s)	1221
Eco91I	GGTNACC	1 cut(s)	5479
EcoICRI	GAGCTC	2 cut(s)	307, 429
EcoNI	CCTNNNNNAGG	1 cut(s)	1863
EcoO109I	RGGNCCY	6 cut(s)	641, 2234, 2387, 2750, 3145, 5723
EcoO65I	GGTNACC	1 cut(s)	5479
EcoRI	GAATTC	2 cut(s)	3927, 4629
EcoRII	CCWGG	8 cut(s)	996, 1156, 1257, 1462, 1709, 3607, 3738, 4262
EcoRV	GATATC	1 cut(s)	1675
EcoT14I	CCWWGG	4 cut(s)	78, 2351, 4144, 5772
EcoT22I	ATGCAT	1 cut(s)	5052
EcoT38I	GRGCYC	4 cut(s)	309, 431, 509, 1893
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	4 cut(s)	78, 2351, 4144, 5772
Esp3I	CGTCTC	2 cut(s)	369, 2051
FalI	AAGNNNNNCTT	8 cut(s)	1690, 1722, 2771, 2803, 5164, 5196, 5233, 5265
FaqI	GGGAC	5 cut(s)	267, 1281, 1785, 2763, 4603
FauI	CCCGC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	4048
FbaI	TGATCA	5 cut(s)	943, 2245, 2542, 5397, 6070
FblI	GTMKAC	2 cut(s)	6, 1418
FriOI	GRGCYC	4 cut(s)	309, 431, 509, 1893
GlaI	GCGC	1 cut(s)	217
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	6 cut(s)	89, 1800, 3503, 4094, 4301, 4316
HaeII	RGCGCY	1 cut(s)	219
HgaI	GACGC	1 cut(s)	5816
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	3 cut(s)	693, 3294, 3466
HindII	GTYRAC	3 cut(s)	693, 3294, 3466
HindIII	AAGCTT	2 cut(s)	1685, 4536
HpyCH4IV	ACGT	2 cut(s)	1037, 2018
HpyF10VI	GCNNNNNNNGC	8 cut(s)	335, 358, 386, 656, 2394, 2403, 3191, 3790
HpySE526I	ACGT	2 cut(s)	1037, 2018
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
KflI	GGGWCCC	1 cut(s)	2750
Kpn2I	TCCGGA	3 cut(s)	59, 2030, 3657
KpnI	GGTACC	1 cut(s)	3072
KroI	GCCGGC	1 cut(s)	4176
KroNI	GCCGGC	1 cut(s)	4178
Ksp22I	TGATCA	5 cut(s)	943, 2245, 2542, 5397, 6070
KspI	CCGCGG	1 cut(s)	387
LmnI	GCTCC	7 cut(s)	183, 434, 450, 3240, 4288, 4456, 4882
Lsp1109I	GCAGC	8 cut(s)	643, 2273, 3039, 3515, 4018, 4040, 5095, 5857
MabI	ACCWGGT	1 cut(s)	1462
MaeII	ACGT	2 cut(s)	1037, 2018
MbiI	CCGCTC	1 cut(s)	4459
MfeI	CAATTG	5 cut(s)	492, 3050, 3833, 4245, 6117
MhlI	GDGCHC	5 cut(s)	309, 431, 509, 1735, 1893
MluI	ACGCGT	1 cut(s)	5098
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	9 cut(s)	2, 57, 3236, 3383, 3404, 3695, 4253, 4323, 5872
MmeI	TCCRAC	7 cut(s)	65, 144, 174, 428, 1656, 1676, 1946
Mph1103I	ATGCAT	1 cut(s)	5052
MroI	TCCGGA	3 cut(s)	59, 2030, 3657
MroNI	GCCGGC	1 cut(s)	4176
MslI	CAYNNNNRTG	6 cut(s)	1815, 3207, 4803, 4824, 4919, 6147
MspA1I	CMGCKG	4 cut(s)	386, 1493, 2765, 4031
MunI	CAATTG	5 cut(s)	492, 3050, 3833, 4245, 6117
Mva1269I	GAATGC	4 cut(s)	463, 1167, 4450, 4682
MvaI	CCWGG	8 cut(s)	998, 1158, 1259, 1464, 1711, 3609, 3740, 4264
MvnI	CGCG	2 cut(s)	386, 5100
MwoI	GCNNNNNNNGC	8 cut(s)	335, 358, 386, 656, 2394, 2403, 3191, 3790
NaeI	GCCGGC	1 cut(s)	4178
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	4 cut(s)	159, 182, 1222, 1223
NcoI	CCATGG	2 cut(s)	78, 2351
NdeI	CATATG	1 cut(s)	4048
NgoMIV	GCCGGC	1 cut(s)	4176
NheI	GCTAGC	2 cut(s)	704, 4420
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	9 cut(s)	1033, 1407, 1838, 2042, 2735, 3361, 4256, 5226, 5479
NotI	GCGGCCGC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	5052
PaeI	GCATGC	2 cut(s)	2611, 4324
PagI	TCATGA	3 cut(s)	4494, 4819, 5289
PaqCI	CACCTGC	1 cut(s)	2873
PceI	AGGCCT	2 cut(s)	5517, 5922
PciI	ACATGT	3 cut(s)	1270, 4825, 5803
PctI	GAATGC	4 cut(s)	463, 1167, 4450, 4682
PdiI	GCCGGC	1 cut(s)	4178
PflMI	CCANNNNNTGG	5 cut(s)	174, 613, 809, 960, 4400
PfoI	TCCNGGA	3 cut(s)	180, 1156, 1257
PleI	GAGTC	9 cut(s)	2, 57, 3235, 3383, 3404, 3695, 4253, 4323, 5872
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	9 cut(s)	2, 57, 3235, 3383, 3404, 3695, 4253, 4323, 5872
PpuMI	RGGWCCY	4 cut(s)	641, 2234, 2750, 5723
PscI	ACATGT	3 cut(s)	1270, 4825, 5803
PshAI	GACNNNNGTC	1 cut(s)	3393
PshBI	ATTAAT	1 cut(s)	5381
PsiI	TTATAA	3 cut(s)	1299, 4316, 5646
Psp124BI	GAGCTC	2 cut(s)	309, 431
Psp5II	RGGWCCY	4 cut(s)	641, 2234, 2750, 5723
Psp6I	CCWGG	8 cut(s)	996, 1156, 1257, 1462, 1709, 3607, 3738, 4262
PspEI	GGTNACC	1 cut(s)	5479
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	8 cut(s)	996, 1156, 1257, 1462, 1709, 3607, 3738, 4262
PspOMI	GGGCCC	1 cut(s)	1889
PspPPI	RGGWCCY	4 cut(s)	641, 2234, 2750, 5723
PstI	CTGCAG	3 cut(s)	2884, 5117, 5847
PstNI	CAGNNNCTG	3 cut(s)	1003, 4505, 4769
PvuII	CAGCTG	3 cut(s)	1493, 2765, 4031
RseI	CAYNNNNRTG	6 cut(s)	1815, 3207, 4803, 4824, 4919, 6147
SacI	GAGCTC	2 cut(s)	309, 431
SacII	CCGCGG	1 cut(s)	387
ScaI	AGTACT	2 cut(s)	4675, 6169
SchI	GAGTC	9 cut(s)	2, 57, 3236, 3383, 3404, 3695, 4253, 4323, 5872
SduI	GDGCHC	5 cut(s)	309, 431, 509, 1735, 1893
SexAI	ACCWGGT	1 cut(s)	1462
SfcI	CTRYAG	6 cut(s)	972, 2280, 2880, 4449, 5113, 5843
SfoI	GGCGCC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	387
SgrBI	CCGCGG	1 cut(s)	387
SmaI	CCCGGG	1 cut(s)	1223
SmiMI	CAYNNNNRTG	6 cut(s)	1815, 3207, 4803, 4824, 4919, 6147
SmlI	CTYRAG	3 cut(s)	1333, 4992, 5529
SmoI	CTYRAG	3 cut(s)	1333, 4992, 5529
SpeI	ACTAGT	3 cut(s)	863, 1657, 2903
SphI	GCATGC	2 cut(s)	2611, 4324
SseBI	AGGCCT	2 cut(s)	5517, 5922
SsiI	CCGC	8 cut(s)	135, 155, 165, 380, 384, 386, 3793, 4459
SspDI	GGCGCC	1 cut(s)	215
SspI	AATATT	1 cut(s)	4974
SstI	GAGCTC	2 cut(s)	309, 431
StuI	AGGCCT	2 cut(s)	5517, 5922
StyI	CCWWGG	4 cut(s)	78, 2351, 4144, 5772
TaiI	ACGT	2 cut(s)	1040, 2021
TaqI	TCGA	8 cut(s)	171, 192, 303, 1194, 2623, 2909, 3263, 3600
TaqII	GACCGA	2 cut(s)	269, 1142
TatI	WGTACW	4 cut(s)	4673, 4938, 5329, 6167
TauI	GCSGC	3 cut(s)	383, 386, 389
TseFI	GTSAC	9 cut(s)	1033, 1407, 1838, 2042, 2735, 3361, 4256, 5226, 5479
TseI	GCWGC	8 cut(s)	656, 2286, 3027, 3503, 4028, 4031, 5108, 5845
Tsp45I	GTSAC	9 cut(s)	1033, 1407, 1838, 2042, 2735, 3361, 4256, 5226, 5479
TspGWI	ACGGA	3 cut(s)	924, 3670, 4676
TspMI	CCCGGG	1 cut(s)	1221
Van91I	CCANNNNNTGG	5 cut(s)	174, 613, 809, 960, 4400
VspI	ATTAAT	1 cut(s)	5381
XagI	CCTNNNNNAGG	1 cut(s)	1863
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1004, 1639, 4711
XmaI	CCCGGG	1 cut(s)	1221
XmiI	GTMKAC	2 cut(s)	6, 1418
ZrmI	AGTACT	2 cut(s)	4675, 6169
Zsp2I	ATGCAT	1 cut(s)	5052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.