Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005668

Physical Location & Seq

Genomic Coordinates Reverse (-)

21501838 .. 21506502

Gene Structure 4665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1103000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGATCCACCAAACGAATTCCCCGATGATTTTTCTTCCTTCCCTCCGATCCCCTTCGCCCTTTTTGTGCCCCCAGAAAACCCAATCCCTAACCCTAATTCAATCGCAGGGCCGATCCCAAACACTGTCGCAAACCCTAGCTCCGCCCATCTTCTTTCCTTCTCGGTCCCCAAGAAACGAAGACGAGGCAGGCCTCATCGCGTCGCGACGTCGTTTCAGCTGCCTCCGATTCCTAACGGCGCTTTGATCGGTAATGGTAACGGTCTTGCTTCTTCTTCTAGTTTAATTTCAGCTCATTCGTCTAGACACAATGTAGGGAACCCTAGTTCTTCGGCAAGAATGGTGCCTGATATCTCCGATGAGATCATTGTGATCAATAAGGATTCCACGGCCGAGGCGCTTATCGCGCTCTCGGCTGGTTTTCCTGCTGATTCCCTCACTGAAGAGGAAATCGATTTTGGGGTAATTCGAGTTATTGGGGGAATAGAGCAGGTCAATTACATTCTCATTAGAAACCATATAATTGCTAGATGGCGCGAAAATGTGTCGAATTGGGTCACTAAAGAGATGTTTGTTGATTCTATACCGAAGCATTGCCATTCCCTTTTGGACTCTACTTACAAGTATCTAGTTTCATATGGATATATTAACTTCGGGGTTGCACCGGCTATCAAAGAGAAGATTCCGGCTGAACCCAGTAAACCACATGTGATTGTGATTGGTGCTGGGCTCGCTGGTCTGGCTGCTGCCAGGCAAATGATGCGTTTTGGGTTTAAAGTGACTGTTCTAGAAGGCAGGAAGCGTGTGGGTGGACGGGTTTATACAAAGAAAATGGAGGGAGGAAATCGGGTAAGTGCAGCTGCGGATTTAGGTGGAAGTGTTTTAACTGGCACATTAGGGAACCCACTCGGCATTGTTGCACGCCAATTGGGTGACATGCTTCATAAAGTGAGAGACAAGTGCCCGCTTTATAGTTTAGATGGGAAGCCTGTAGATCCTGATATGGATATGAAGGTGGAAGCAGCTTTTAACCGTCTGTTAGATAAGGCAAGTACCCTTAGGCAGTTAATGGGGGGTGTTTCAGTTGATGTGTCTCTTGGTGCAGCACTGGAAACATTCTGGGATGCAGTGAATGCTGAGGAGACGAACTTGTTTAATTGGCATCTTGCAAATTTGGAATATGCAAATGCAGGGTTAATATCTAAATTGTCACTTGCATTTTGGGACCAAGATGATCCATATGATATGGGAGGGGACCATTGCTTCTTGCCTGGAGGTAATGGAAGGCTGGTGCAGGCTTTGGCAGAGAATGTGCCGATTTTATATGAGAGAGTGGTGAATACCATTAGGTATGGTAGTGACGGAGTGCAGGTTATTGCTGGCAACCAGGTTTTTAAGGGTGATATGGCTTTGTGCACTGTTCCACTTGGGGTTTTGAAGAGTGGGTCCATCAAGTTTAATCCAGAGTTGCCTCAGAGGAAGCTTGATGGAATAAAGAGGTTGGGGTTCGGACTGTTGAATAAGGTTGCAATGCTTTTTCCTCATGTGTTTTGGGGCACAGATCTTGAGACCTTTGGCCACCTTTCAGATGATCCAAGCCGTCGTGGGGAGTTCTTCCTGTTTTACAGCTATGCAACAGTTGCTGGCGGTCCCCTTTTGATTGCTTTAGTAGCAGGTGAAGCTGCACATAAGTTTGAGACCATGCCCCCTACAGATGCTGTGACCCGGGTTATTCAGATTCTCAAGGGTATTTATGAACCACAAGGAATTACTGTCCCAGAACCCATCCAAACAATCTGTACTAGATGGGGAAGTGATCCCTTCAGCCTAGGCTCTTATTCTAATGTAGCAGTAGGGGCATCAGGAGATGATTATGATATTTTAGCAGAAAGTGTAGGAGATGGACGACTTTTCTTTGCAGGTGAGGCTACCAATCGGAGATATCCTGCAACCATGCATGGTGCTTTTCTCAGTGGGCTCAGAGAAGCCGCCAATATGGCTCACTATGCTAATGCTCGAGCCCTGAGGATAAAAATTAACAGGAACCCATCAAAGAACGCCCATTCTTGTGCTTCTGTCCTTGCAGATTTATTTAGGGAGCCTGATTTAGAATTTGGGAGTTTTTCTGTTATTTTTGGTCGAAGGAATGCTGATCCTAAGTCGACGGCAGTTTTAAGAGTGACATTTAATGAGCCTCGAAAGAAGAGTCATGACAGTTCAAACCCTGATCAGCCGCATTCAAATAAGTTACTTTTTCAACAGCTTCAGTCACATTTCAATCAGCAACAGCAACTTCATGTTTACACTTTGTTATCTAGGCAGCAGGCTCTTGACCTCAGAGAGGTGCGAGGGGGTGATGAGATGAGGTTAAATTACCTTTGTGAAAATCTGGGGGTGAAGCTGGTGGGGAGAAAAGGATTGGGGCCTACTGCTGATTCTGTAATTGCCTTAATAAAAGCTGAGAGGGGTAATCGCAAACCTGCTTCAACTTCATTGGCTTTAAAGTCCGGGACATCAAAGCTGAAAGCTGGCAATTTGAAAAAAAAATTTGTCAGAAGGGCCAAAATAATGCGCACTGGTAATGGGTCAGCCCCTTCTGCTAATTCAAACTTGGTTAATGGTAAGGTGTCAGACGAAACTACCACAAGTCAGGCTCCCTCCAACACACTTGGTCCAGGGCAAAACGATTCTGACATGTTGAAGAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

904

Amino Acids

97.96

Weight (kDa)

8.97

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	144 - 218	3.3e-14	SWIRM domain
Pyr_redox_2	PF07992	236 - 280	5.6e-06	Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8	PF13450	239 - 297	1.5e-10	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	244 - 666	1.5e-80	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10390 AT3G10390 AT3G10390 AT3G10390
fragaria_vesca	FvH4_7g18750 FvH4_7g18750 FvH4_7g18750 FvH4_7g18750
malus_domestica	MD01G1103000.v1.1
prunus_persica	Prupe.2G208600_v2.0.a1 Prupe.2G208600_v2.0.a1
pyrus_communis	pycom01g12950 pycom07g16350
rosa_chinensis	RchiOBHm_Chr1g0362561
rosa_laevigata	RLG00000027639
rosa_multiflora	Rmu_sc0005725.1_g000006
rosa_roxburghii	Rroxscaffold_4G00293970
rosa_rugosa	Rorug01G0299000 Rorug01G0299100 Rorug01G0299200 Rorug01G0299300 Rorug01G0299300 Rorug01G0299400
rosa_samantha	Rh1AG308200 Rh1BG271200 Rh1CG289100 Rh1DG301600
rosa_wichuraiana	Rw1G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1664, 1910
AatII	GACGTC	1 cut(s)	212
Acc16I	TGCGCA	1 cut(s)	2573
Acc36I	ACCTGC	5 cut(s)	481, 1360, 1664, 1910, 2488
AccB1I	GGYRCC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	2162
AccII	CGCG	4 cut(s)	201, 206, 407, 537
AciI	CCGC	6 cut(s)	144, 863, 965, 1647, 1989, 2234
AclWI	GGATC	8 cut(s)	12, 43, 109, 989, 1229, 1586, 1811, 2147
AcoI	YGGCCR	2 cut(s)	390, 1576
AcsI	RAATTY	4 cut(s)	17, 1171, 2111, 2546
AcuI	CTGAAG	3 cut(s)	462, 1807, 2249
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	2 cut(s)	1054, 1801
AfiI	CCNNNNNNNGG	2 cut(s)	1606, 2341
AflIII	ACRYGT	2 cut(s)	706, 2694
AjnI	CCWGG	4 cut(s)	749, 1270, 1386, 2674
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
Alw21I	GWGCWC	1 cut(s)	1418
Alw26I	GTCTC	5 cut(s)	948, 1098, 1136, 1562, 1691
Alw44I	GTGCAC	1 cut(s)	1414
AlwI	GGATC	8 cut(s)	12, 43, 109, 989, 1229, 1586, 1811, 2147
AlwNI	CAGNNNCTG	2 cut(s)	1643, 1718
Ama87I	CYCGRG	2 cut(s)	1725, 2016
AoxI	GGCC	6 cut(s)	110, 191, 390, 1576, 2423, 2559
ApaLI	GTGCAC	1 cut(s)	1414
ApeKI	GCWGC	9 cut(s)	220, 743, 746, 857, 860, 1022, 1103, 1682, 2320
ApoI	RAATTY	4 cut(s)	17, 1171, 2111, 2546
ArsI	GACNNNNNNTTYG	2 cut(s)	2191, 2223
AspA2I	CCTAGG	1 cut(s)	1828
AspLEI	GCGC	5 cut(s)	242, 400, 409, 537, 2574
AspS9I	GGNCC	9 cut(s)	110, 166, 1225, 1255, 1446, 1649, 2423, 2559, 2672
AsuC2I	CCSGG	3 cut(s)	1726, 1727, 2509
AsuHPI	GGTGA	7 cut(s)	944, 1348, 1412, 1688, 1934, 2366, 2407
AvaI	CYCGRG	2 cut(s)	1725, 2016
AvaII	GGWCC	6 cut(s)	166, 1225, 1255, 1446, 1649, 2672
AvrII	CCTAGG	1 cut(s)	1828
AxyI	CCTNAGG	2 cut(s)	1058, 2024
BaeGI	GKGCMC	4 cut(s)	72, 965, 1418, 1559
BalI	TGGCCA	1 cut(s)	1578
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	3 cut(s)	732, 1980, 2023
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	1418
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	9 cut(s)	207, 730, 733, 847, 869, 1034, 1115, 1669, 2332
BccI	CCATC	9 cut(s)	156, 525, 974, 1457, 1481, 1793, 1800, 1895, 2056
BceAI	ACGGC	4 cut(s)	253, 405, 1584, 2181
BciT130I	CCWGG	4 cut(s)	751, 1272, 1388, 2676
BclI	TGATCA	2 cut(s)	372, 2227
BcnI	CCSGG	3 cut(s)	1726, 1727, 2509
BcoDI	GTCTC	5 cut(s)	948, 1098, 1136, 1562, 1691
BfmI	CTRYAG	2 cut(s)	990, 1710
BfoI	RGCGCY	2 cut(s)	243, 401
BfuAI	ACCTGC	5 cut(s)	481, 1360, 1664, 1910, 2488
BglI	GCCNNNNNGGC	1 cut(s)	1997
BglII	AGATCT	1 cut(s)	1561
BlnI	CCTAGG	1 cut(s)	1828
Bme1390I	CCNGG	7 cut(s)	751, 1272, 1388, 1726, 1727, 2509, 2676
Bme18I	GGWCC	6 cut(s)	166, 1225, 1255, 1446, 1649, 2672
BmeT110I	CYCGRG	2 cut(s)	1725, 2016
BmgT120I	GGNCC	9 cut(s)	110, 166, 1225, 1255, 1446, 1649, 2423, 2559, 2672
BmrFI	CCNGG	7 cut(s)	751, 1272, 1388, 1726, 1727, 2509, 2676
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	5 cut(s)	750, 1114, 1171, 1705, 1868
BmuI	ACTGGG	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	1293
Bpu10I	CCTNAGC	1 cut(s)	1137
BpuEI	CTTGAG	2 cut(s)	1586, 1727
BpuMI	CCSGG	3 cut(s)	1726, 1727, 2509
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	2 cut(s)	1562, 1691
BsaJI	CCNNGG	5 cut(s)	387, 393, 1725, 1828, 2675
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 1356, 1386
Bsc4I	CCNNNNNNNGG	2 cut(s)	1606, 2341
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	4 cut(s)	696, 892, 1113, 2581
Bse21I	CCTNAGG	2 cut(s)	1058, 2024
Bse3DI	GCAATG	3 cut(s)	592, 1258, 1536
BseBI	CCWGG	4 cut(s)	751, 1272, 1388, 2676
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	5 cut(s)	387, 393, 1725, 1828, 2675
BseGI	GGATG	2 cut(s)	1129, 1785
BseLI	CCNNNNNNNGG	2 cut(s)	1606, 2341
BseMI	GCAATG	3 cut(s)	592, 1258, 1536
BseMII	CTCAG	7 cut(s)	1128, 1487, 1984, 1993, 2015, 2350, 2451
BseNI	ACTGG	4 cut(s)	696, 892, 1113, 2581
BseRI	GAGGAG	1 cut(s)	1154
BseSI	GKGCMC	4 cut(s)	72, 965, 1418, 1559
BseX3I	CGGCCG	1 cut(s)	390
BseXI	GCAGC	9 cut(s)	207, 730, 733, 847, 869, 1034, 1115, 1669, 2332
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	5 cut(s)	876, 1122, 1313, 1388, 1668
Bsh1236I	CGCG	4 cut(s)	201, 206, 407, 537
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	6 cut(s)	112, 193, 392, 1578, 2425, 2561
BshNI	GGYRCC	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	1418
BsiHKCI	CYCGRG	2 cut(s)	1725, 2016
BsiSI	CCGG	4 cut(s)	665, 686, 1726, 2508
BslFI	GGGAC	6 cut(s)	152, 1238, 1268, 1635, 1760, 2524
BslI	CCNNNNNNNGG	2 cut(s)	1606, 2341
BsmAI	GTCTC	5 cut(s)	948, 1098, 1136, 1562, 1691
BsmBI	CGTCTC	1 cut(s)	1136
BsmFI	GGGAC	6 cut(s)	152, 1238, 1268, 1635, 1760, 2524
BsmI	GAATGC	3 cut(s)	1138, 2152, 2236
BsnI	GGCC	6 cut(s)	112, 193, 392, 1578, 2425, 2561
Bso31I	GGTCTC	2 cut(s)	1562, 1691
BsoBI	CYCGRG	2 cut(s)	1725, 2016
Bsp1286I	GDGCHC	7 cut(s)	72, 732, 965, 1418, 1559, 1980, 2023
Bsp68I	TCGCGA	1 cut(s)	206
BspACI	CCGC	6 cut(s)	144, 863, 965, 1647, 1989, 2234
BspANI	GGCC	6 cut(s)	112, 193, 392, 1578, 2425, 2561
BspCNI	CTCAG	7 cut(s)	1129, 1486, 1983, 1992, 2016, 2349, 2452
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	4 cut(s)	201, 206, 407, 537
BspHI	TCATGA	1 cut(s)	2209
BspMI	ACCTGC	5 cut(s)	481, 1360, 1664, 1910, 2488
BspPI	GGATC	8 cut(s)	12, 43, 109, 989, 1229, 1586, 1811, 2147
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	2 cut(s)	1562, 1691
BsrDI	GCAATG	3 cut(s)	592, 1258, 1536
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	696, 892, 1113, 2581
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	5 cut(s)	387, 393, 1725, 1828, 2675
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	1828
Bst2UI	CCWGG	4 cut(s)	751, 1272, 1388, 2676
Bst4CI	ACNGT	9 cut(s)	127, 263, 784, 1034, 1420, 1515, 1639, 1774, 2216
Bst6I	CTCTTC	3 cut(s)	438, 1433, 2198
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	3 cut(s)	760, 1133, 1640
BstC8I	GCNNGC	9 cut(s)	191, 732, 922, 965, 1296, 1381, 1645, 2325, 2530
BstDEI	CTNAG	9 cut(s)	1058, 1137, 1473, 1970, 1979, 2024, 2157, 2336, 2460
BstDSI	CCRYGG	1 cut(s)	387
BstENI	CCTNNNNNAGG	1 cut(s)	2339
BstF5I	GGATG	2 cut(s)	1129, 1785
BstFNI	CGCG	4 cut(s)	201, 206, 407, 537
BstH2I	RGCGCY	2 cut(s)	243, 401
BstHHI	GCGC	5 cut(s)	242, 400, 409, 537, 2574
BstMAI	GTCTC	5 cut(s)	948, 1098, 1136, 1562, 1691
BstMCI	CGRYCG	1 cut(s)	393
BstNI	CCWGG	4 cut(s)	751, 1272, 1388, 2676
BstNSI	RCATGY	3 cut(s)	710, 940, 2698
BstSCI	CCNGG	7 cut(s)	749, 1270, 1386, 1724, 1725, 2507, 2674
BstSFI	CTRYAG	2 cut(s)	990, 1710
BstSLI	GKGCMC	4 cut(s)	72, 965, 1418, 1559
BstUI	CGCG	4 cut(s)	201, 206, 407, 537
BstV1I	GCAGC	9 cut(s)	207, 730, 733, 847, 869, 1034, 1115, 1669, 2332
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	3 cut(s)	4, 994, 1561
BstYI	RGATCY	3 cut(s)	4, 994, 1561
BstZI	CGGCCG	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	453
Bsu36I	CCTNAGG	2 cut(s)	1058, 2024
BsuRI	GGCC	6 cut(s)	112, 193, 392, 1578, 2425, 2561
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	1129, 1785
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	7 cut(s)	123, 438, 1106, 1134, 1416, 1978, 2574
BtuMI	TCGCGA	1 cut(s)	206
BveI	ACCTGC	5 cut(s)	481, 1360, 1664, 1910, 2488
Cac8I	GCNNGC	9 cut(s)	191, 732, 922, 965, 1296, 1381, 1645, 2325, 2530
CaiI	CAGNNNCTG	2 cut(s)	1643, 1718
CciI	TCATGA	1 cut(s)	2209
CfoI	GCGC	5 cut(s)	242, 400, 409, 537, 2574
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	9 cut(s)	110, 166, 1225, 1255, 1446, 1649, 2423, 2559, 2672
Cfr9I	CCCGGG	1 cut(s)	1725
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	1386
Csp6I	GTAC	2 cut(s)	1053, 1800
CviAII	CATG	9 cut(s)	707, 937, 1544, 1702, 1954, 1958, 2210, 2297, 2695
CviQI	GTAC	2 cut(s)	1053, 1800
DdeI	CTNAG	9 cut(s)	1058, 1137, 1473, 1970, 1979, 2024, 2157, 2336, 2460
DraI	TTTAAA	2 cut(s)	775, 2502
EaeI	YGGCCR	2 cut(s)	390, 1576
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	438, 1433, 2198
EarI	CTCTTC	3 cut(s)	438, 1433, 2198
EciI	GGCGGA	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	1828
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	732, 1980, 2023
Eco31I	GGTCTC	2 cut(s)	1562, 1691
Eco32I	GATATC	2 cut(s)	352, 1943
Eco47I	GGWCC	6 cut(s)	166, 1225, 1255, 1446, 1649, 2672
Eco52I	CGGCCG	1 cut(s)	390
Eco57I	CTGAAG	3 cut(s)	462, 1807, 2249
Eco81I	CCTNAGG	2 cut(s)	1058, 2024
Eco88I	CYCGRG	2 cut(s)	1725, 2016
EcoNI	CCTNNNNNAGG	1 cut(s)	2339
EcoO109I	RGGNCCY	1 cut(s)	2423
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	4 cut(s)	749, 1270, 1386, 2674
EcoRV	GATATC	2 cut(s)	352, 1943
EcoT14I	CCWWGG	1 cut(s)	1828
EcoT22I	ATGCAT	1 cut(s)	1959
EcoT38I	GRGCYC	3 cut(s)	732, 1980, 2023
ErhI	CCWWGG	1 cut(s)	1828
Esp3I	CGTCTC	1 cut(s)	1136
FaeI	CATG	9 cut(s)	710, 940, 1547, 1705, 1957, 1961, 2213, 2300, 2698
FaqI	GGGAC	6 cut(s)	152, 1238, 1268, 1635, 1760, 2524
FatI	CATG	9 cut(s)	706, 936, 1543, 1701, 1953, 1957, 2209, 2296, 2694
FauI	CCCGC	1 cut(s)	972
FauNDI	CATATG	2 cut(s)	637, 1240
FbaI	TGATCA	2 cut(s)	372, 2227
FblI	GTMKAC	1 cut(s)	2162
FokI	GGATG	2 cut(s)	1136, 1772
FriOI	GRGCYC	3 cut(s)	732, 1980, 2023
FspAI	RTGCGCAY	1 cut(s)	2573
FspI	TGCGCA	1 cut(s)	2573
GlaI	GCGC	5 cut(s)	241, 399, 408, 536, 2573
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	1293
HaeII	RGCGCY	2 cut(s)	243, 401
HaeIII	GGCC	6 cut(s)	112, 193, 392, 1578, 2425, 2561
HapII	CCGG	4 cut(s)	665, 686, 1726, 2508
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	5 cut(s)	242, 400, 409, 537, 2574
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	9 cut(s)	710, 940, 1547, 1705, 1957, 1961, 2213, 2300, 2698
Hin6I	GCGC	5 cut(s)	240, 398, 407, 535, 2572
HinP1I	GCGC	5 cut(s)	240, 398, 407, 535, 2572
HincII	GTYRAC	1 cut(s)	2163
HindII	GTYRAC	1 cut(s)	2163
HindIII	AAGCTT	1 cut(s)	1481
HpaII	CCGG	4 cut(s)	665, 686, 1726, 2508
HphI	GGTGA	7 cut(s)	944, 1348, 1412, 1688, 1934, 2366, 2407
Hpy166II	GTNNAC	5 cut(s)	701, 812, 1416, 2163, 2302
Hpy188III	TCNNGA	9 cut(s)	205, 303, 788, 998, 1463, 1565, 1863, 2210, 2330
Hpy8I	GTNNAC	5 cut(s)	701, 812, 1416, 2163, 2302
Hpy99I	CGWCG	5 cut(s)	206, 211, 214, 1605, 2167
HpyCH4III	ACNGT	9 cut(s)	127, 263, 784, 1034, 1420, 1515, 1639, 1774, 2216
HpyCH4IV	ACGT	1 cut(s)	209
HpyF3I	CTNAG	9 cut(s)	1058, 1137, 1473, 1970, 1979, 2024, 2157, 2336, 2460
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	9 cut(s)	710, 940, 1547, 1705, 1957, 1961, 2213, 2300, 2698
HspAI	GCGC	5 cut(s)	240, 398, 407, 535, 2572
Ksp22I	TGATCA	2 cut(s)	372, 2227
LmnI	GCTCC	3 cut(s)	146, 2098, 2659
Lsp1109I	GCAGC	9 cut(s)	207, 730, 733, 847, 869, 1034, 1115, 1669, 2332
LweI	GCATC	5 cut(s)	750, 1114, 1171, 1705, 1868
MabI	ACCWGGT	1 cut(s)	1386
MaeII	ACGT	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	926
MflI	RGATCY	3 cut(s)	4, 994, 1561
MhlI	GDGCHC	7 cut(s)	72, 732, 965, 1418, 1559, 1980, 2023
MlsI	TGGCCA	1 cut(s)	1578
MluNI	TGGCCA	1 cut(s)	1578
MlyI	GAGTC	2 cut(s)	605, 2215
MmeI	TCCRAC	1 cut(s)	2685
Mox20I	TGGCCA	1 cut(s)	1578
Mph1103I	ATGCAT	1 cut(s)	1959
MscI	TGGCCA	1 cut(s)	1578
MslI	CAYNNNNRTG	1 cut(s)	2067
Msp20I	TGGCCA	1 cut(s)	1578
MspA1I	CMGCKG	2 cut(s)	220, 860
MspI	CCGG	4 cut(s)	665, 686, 1726, 2508
MspR9I	CCNGG	7 cut(s)	751, 1272, 1388, 1726, 1727, 2509, 2676
MunI	CAATTG	1 cut(s)	926
Mva1269I	GAATGC	3 cut(s)	1138, 2152, 2236
MvaI	CCWGG	4 cut(s)	751, 1272, 1388, 2676
MvnI	CGCG	4 cut(s)	201, 206, 407, 537
NciI	CCSGG	3 cut(s)	1726, 1727, 2509
NdeI	CATATG	2 cut(s)	637, 1240
NlaIII	CATG	9 cut(s)	710, 940, 1547, 1705, 1957, 1961, 2213, 2300, 2698
NmeAIII	GCCGAG	3 cut(s)	392, 418, 888
NmuCI	GTSAC	8 cut(s)	556, 778, 932, 1209, 1358, 1720, 2179, 2268
NruI	TCGCGA	1 cut(s)	206
NsbI	TGCGCA	1 cut(s)	2573
NsiI	ATGCAT	1 cut(s)	1959
NspI	RCATGY	3 cut(s)	710, 940, 2698
PaeR7I	CTCGAG	1 cut(s)	2016
PagI	TCATGA	1 cut(s)	2209
PaqCI	CACCTGC	2 cut(s)	1664, 1910
PceI	AGGCCT	1 cut(s)	193
PciI	ACATGT	2 cut(s)	706, 2694
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	3 cut(s)	1138, 2152, 2236
PfeI	GAWTC	8 cut(s)	229, 383, 431, 578, 682, 1738, 2435, 2687
PfoI	TCCNGGA	1 cut(s)	2507
PleI	GAGTC	2 cut(s)	605, 2214
PpsI	GAGTC	2 cut(s)	605, 2214
PscI	ACATGT	2 cut(s)	706, 2694
Psp6I	CCWGG	4 cut(s)	749, 1270, 1386, 2674
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	4 cut(s)	749, 1270, 1386, 2674
PspPI	GGNCC	9 cut(s)	110, 166, 1225, 1255, 1446, 1649, 2423, 2559, 2672
PspXI	VCTCGAGB	1 cut(s)	2016
PstNI	CAGNNNCTG	2 cut(s)	1643, 1718
PsuI	RGATCY	3 cut(s)	4, 994, 1561
PvuII	CAGCTG	2 cut(s)	220, 860
RruI	TCGCGA	1 cut(s)	206
RsaI	GTAC	2 cut(s)	1054, 1801
RsaNI	GTAC	2 cut(s)	1053, 1800
RseI	CAYNNNNRTG	1 cut(s)	2067
SalI	GTCGAC	1 cut(s)	2161
Sau96I	GGNCC	9 cut(s)	110, 166, 1225, 1255, 1446, 1649, 2423, 2559, 2672
SchI	GAGTC	2 cut(s)	605, 2215
ScrFI	CCNGG	7 cut(s)	751, 1272, 1388, 1726, 1727, 2509, 2676
SduI	GDGCHC	7 cut(s)	72, 732, 965, 1418, 1559, 1980, 2023
SexAI	ACCWGGT	1 cut(s)	1386
SfaNI	GCATC	5 cut(s)	750, 1114, 1171, 1705, 1868
SfcI	CTRYAG	2 cut(s)	990, 1710
Sfr274I	CTCGAG	1 cut(s)	2016
SinI	GGWCC	6 cut(s)	166, 1225, 1255, 1446, 1649, 2672
SlaI	CTCGAG	1 cut(s)	2016
SmaI	CCCGGG	1 cut(s)	1727
SmiMI	CAYNNNNRTG	1 cut(s)	2067
SmlI	CTYRAG	3 cut(s)	1565, 1742, 2016
SmoI	CTYRAG	3 cut(s)	1565, 1742, 2016
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	6 cut(s)	144, 863, 965, 1647, 1989, 2234
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	7 cut(s)	749, 1270, 1386, 1724, 1725, 2507, 2674
StyI	CCWWGG	1 cut(s)	1828
TaaI	ACNGT	9 cut(s)	127, 263, 784, 1034, 1420, 1515, 1639, 1774, 2216
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	7 cut(s)	453, 469, 548, 2017, 2140, 2162, 2197
TaqII	GACCGA	1 cut(s)	154
TatI	WGTACW	1 cut(s)	1799
TauI	GCSGC	2 cut(s)	1991, 2236
TfiI	GAWTC	8 cut(s)	229, 383, 431, 578, 682, 1738, 2435, 2687
TscAI	CASTG	7 cut(s)	130, 445, 1113, 1134, 1423, 1978, 2581
TseFI	GTSAC	8 cut(s)	556, 778, 932, 1209, 1358, 1720, 2179, 2268
TseI	GCWGC	9 cut(s)	220, 743, 746, 857, 860, 1022, 1103, 1682, 2320
Tsp45I	GTSAC	8 cut(s)	556, 778, 932, 1209, 1358, 1720, 2179, 2268
TspDTI	ATGAA	6 cut(s)	624, 932, 1025, 1770, 2285, 2481
TspGWI	ACGGA	1 cut(s)	1377
TspMI	CCCGGG	1 cut(s)	1725
TspRI	CASTG	7 cut(s)	130, 445, 1113, 1134, 1423, 1978, 2581
VneI	GTGCAC	1 cut(s)	1414
VpaK11BI	GGWCC	6 cut(s)	166, 1225, 1255, 1446, 1649, 2672
XagI	CCTNNNNNAGG	1 cut(s)	2339
XapI	RAATTY	4 cut(s)	17, 1171, 2111, 2546
XbaI	TCTAGA	2 cut(s)	302, 787
XceI	RCATGY	3 cut(s)	710, 940, 2698
XhoI	CTCGAG	1 cut(s)	2016
XmaI	CCCGGG	1 cut(s)	1725
XmaJI	CCTAGG	1 cut(s)	1828
XmiI	GTMKAC	1 cut(s)	2162
ZraI	GACGTC	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	1959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.