Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005668

Physical Location & Seq

Genomic Coordinates Forward (+)

41584834 .. 41589840

Gene Structure 5007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0299300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGATGCCGATGTACAGATACATGGATTCACATCCCGAGCAAAAAAACCAGACCTTCTCTTTCCCTCAATATCCTTACCCGCCTCACCAACCAAACCCACCTATGGCATTTGTGCCTTGGCCTTATGGTGGCAATTTTGGCTACCCAAACCCCGTGCCGTGCTATTCTTGCTGTAACCATGGTAATGCTCCTGGTTATAATGGTTTCAGACCCTCCTACCCTCAAACTCCAATGCCATCACCAATACATTTTGCTGGTGGTTATCCTGGTCCATATCATGAAGCCTACCCTGTTCAATATGTCCCGCCTCCTCATTACTCTATGGAGCTTCCTCGATATGATTATGACAAGAAGATGCCAGGAAATTATCACTGCTGTGGGTGTCCTAATCACAGCCACCAGAATAAGGGTGTGAAGATTGAAGAACAAGAATCACCGGACGTTGTCGAAAAGGTGAATGACTCATTGGTTCCGGGTCATATGACAAATTACCCTTATCCTGTTGTCTGGATTCCACCAGGAAACATGAAGGGTGAGGAGCAAAGGAAACTTTCTGGTCCGGAGAGTGCAGAGCAAAAGAAGAATCCAGGTGATCATGAAAGGCCTCCTGTGAGTTTGAAATCTCAGGAAGGAGATCAAGGGCGTGGTTTGTTACCTTTTGACATGGACAATATTGGATCTTTGATGCAAGGTGGAAAGGGGGAGCGGGTTCAGGATCAACGGAGTGAGGACAGAAAAAAGGAATTTCCATTTCCAATTTTTTGGATGCCCTCTTATGATGATACTAAGCGTGATGGAGCTGGAAAGAAGGACAAGGACATGGATGCATCTCAGGATCAGCAGACTGAAGAACGAATGAGGCAACTCCCATTCCCATTCTTCTGGCTCCCTCTTGAAAATAAACAGAAGGATGTTGGCATGAGGGAGGAGGAGAAGGAGGAAAGTAGGAAGGTTGATGCTAATGCAAGGATTGTTCCGACGAAGCACGCTGAGAGTAGTGACAATTGGACTGGAGTTAACGAAGATAAATCTGCCGGGCTGGGTGTTCTAGACAGAAAGGGAAAAGATGCTAATCAGAGAGTCATACCAGTGAAGCAAATGGAGGATCTACCTAAAAAGGAGGACAACTCTGAAGACGCTAAGAGAAGAGGAAGAGAAGTCCCTGTGAAGCATGTGGATGACAATTTAGCTAACAAACCTTCTGGTAGCAGTGTTCGAAGCCAGTCATCATCCCCGAAGAAATCATCTAAGCTACCTCCTGTTTGTCTGAGAGTCGATCCTTTGCCAAGTAAGAAGAAGAATGGCGGTGGTAGTTCCAGATCTCCTAGTCCTCCTGGTCATAAAAAAGTTCAAAAAGAGACTTCAGCAGACACTTCCAAGGCCTCTGCTTCGTTTAGCTTGCCAGAGGACTCGCAACAAAATATGAAGCCCCACAATTCAAGCAATGGAAATGAGGTAGAACCATTCAAGAAAGGGAAGGTTATTGATGTTATGGATAAGGGAATCGGCAAAAACAATGATTCAATGCATGCATCTCAGATTCCTGTTAATTCCAAAGAGGTTTCCTCAAAGGCAACTGTTGGGGATGCTGGCAAAGATGGGAATCAATGTGAGGTCAATGAGGATCAAGGCACAGGAAAGATAGGAGAAACAACAGCTCAGAATGTGGAAGAGACGAAGAAAACTTCGGGGTCAGTTAAATCAGTTGTTGAGGGAAGTAATTTTGAGAGGAAGAGGCTATCAGATGTAGCAGCTGCTGTGCTTATTCAATCTGCCTACCGTGGATTCATGGTTAGGAGGTGGGAACCATTGAAGAAATTGAAGCAAATAGCTGAGATACGTGAGCAAGTGGCTGATATTCGGAATCAAATCATATCTTTGGAGACCTCTGATCTCAACAAAGATGATAAACAAAGACTGGTCATCGGGGAAACCATCATGAGACTTCTTCTAAGACTGGATACCATTCAGGGTTTGCTCCCAAGTCTCAGAGACATAAGAAGATCCTTGGCAAGGGAGCTTGTACTTCTGCAGGAAAAGCTTGATGATATAATGTCTAAGAGATCCCAAGACACAATGCAAGAAGTGTCTGCTGTTAAAACTGTGGAAGAGCTCAATGCCAATGGTAACAACAGTGTCTGCATGTCAGAGCAGCAAGCAGAGGAAGCAGCAAAAGTTGGGGAAGAATTCCATGCTGGTGTCAGCGATAACAGTCATGTTGCCACAGAGCCTTGCCAGGGGCAGGTGACACAAACTGCGGATTCTCTCCCTGGCGTGGAAGTCGAGGTACCAGAACTCTCTGAACATAAAGAGCTGGATACAGCATCTGAGAATGGACAGCATGAACTTCCTGGGGATAGTGATCTGAATTCTAAAGATCTTGATTCAGGATCTCCAATGGAATCGAATGATTCTCTCCCTGATGTGGATGTCGAGGTACCAGAACTCTCTGAACATAAAGAGCTGGACACAGCATCTGAGAAAGGACAGCATGAACTTCCTGGGGATAGTGATCTGAATTCTAAAGGTCTTGATTCAGGACCTACAATGGAATGGAAAGATAACATCGCTGATGGACAGGCAGTGGTGGTGGATGCAGAAATGGCCAATGGTGCTACTGAGTTTGAGCAATGTGGTGAAGCTCCATCTCCTGTAGAGGACACGCCAGACCATAGTGTGGTTTCAACTGCTTCAGAAGTTACAATAAGTCCAGAGTTGCCTCAAATAGCAGTTAATAATGAGCCTGCTGCTTCAGAGCCTGAAAATGTTGAAGCAGTGGGATTGATCATGTCACCTGATATAACTTCTCCAATAGCCATTGATGATGCGACTGACAAAGAAGTAGAGATGCATGAGCTTGCACCATTGCAACTAGGCACAACTCATGAAGACAGTGGTGCTGTTTCTGAATTGAAAAAGAACGAAGAAGTCCACATGGTGAAAGAAAACGATATCTCAAAAAGTGGGGAAGAAGAAATAGTGGCTCTGCAACAAGAGGAGGGAACAATCGAGAAGTTGATAAAGGTGGGAGGCCAAGTTGATGATGAACACACAGGCGATACATTACTTGATCCAGAGGTCGGGCACCATCACCAAAACGAAGCTGGTATGGATGTTCCACTGCCAGCAGTGTCTCAAACTGTAGAATCCCAACCATTGAGCTTACCTGTTGATGAGACAAGCACTCAAGATGTGGTGCATAAAAATGGGCCTGCAGACCTGACTGATGGTGGTGACACTTGCTTATCTACATTGGTTGATGCTGACACGCCCAATGAGGATGAGGTTGAGAAAAATAGAGAAGACTATAAAGACCTGCAAGCAGTGACCATAGAAGACGATACAGAGATGAAAGAGAACAAAGCTGAAAGCGAAGACAGCAAAGGGGATGTCCTCACTGAGAAGAGTGAGCCATTGCCTGCATCACCAATCACAACCGAGGTTTCCTCCGGTGATGGAAGCATCGTGAGAGATGAAGGTGCTAGGAAGTTAATTAAAGAGAATGAGAAGCTAAGGGAAACGATGCAGAAGTTGATGGTAGCAGGAAAAGACCAATTACAAGTGATATCCGACCTCACCGGTAGAGTGAAAAATTTGGAGAAAAAGTTGGCTGAGAAGAAGAAATTAAGAACAAAAAGGTGTAGGGCTGCATCATCTCGGTCTTCGTGTGTCAAACCATCAAGCAATCACTTGAAGGAGAGGACTGGTGTTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1239

Amino Acids

136.35

Weight (kDa)

4.93

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	610 - 683	5e-09	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10390 AT3G10390 AT3G10390 AT3G10390
fragaria_vesca	FvH4_7g18750 FvH4_7g18750 FvH4_7g18750 FvH4_7g18750
malus_domestica	MD01G1103000.v1.1
prunus_persica	Prupe.2G208600_v2.0.a1 Prupe.2G208600_v2.0.a1
pyrus_communis	pycom01g12950 pycom07g16350
rosa_chinensis	RchiOBHm_Chr1g0362561
rosa_laevigata	RLG00000027639
rosa_multiflora	Rmu_sc0005725.1_g000006
rosa_roxburghii	Rroxscaffold_4G00293970
rosa_rugosa	Rorug01G0299000 Rorug01G0299100 Rorug01G0299200 Rorug01G0299300 Rorug01G0299300 Rorug01G0299400
rosa_samantha	Rh1AG308200 Rh1BG271200 Rh1CG289100 Rh1DG301600
rosa_wichuraiana	Rw1G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AarI	CACCTGC	1 cut(s)	2233
Acc36I	ACCTGC	2 cut(s)	2233, 3324
Acc65I	GGTACC	2 cut(s)	2287, 2437
AccB1I	GGYRCC	3 cut(s)	2287, 2437, 3084
AccB7I	CCANNNNNTGG	1 cut(s)	2677
AccBSI	CCGCTC	1 cut(s)	706
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	5 cut(s)	80, 305, 706, 1305, 2258
AcoI	YGGCCR	1 cut(s)	2604
AcsI	RAATTY	5 cut(s)	743, 2186, 2368, 2518, 3592
AcuI	CTGAAG	5 cut(s)	867, 1152, 1347, 2676, 2736
AdeI	CACNNNGTG	1 cut(s)	2938
AfaI	GTAC	4 cut(s)	14, 2025, 2289, 2439
AgeI	ACCGGT	1 cut(s)	3578
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	2115
Alw26I	GTCTC	8 cut(s)	1352, 1667, 1877, 1936, 1986, 1991, 3138, 3170
AlwNI	CAGNNNCTG	5 cut(s)	1757, 2139, 2327, 2477, 2759
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	6 cut(s)	119, 602, 1380, 2604, 3031, 3209
ApeKI	GCWGC	6 cut(s)	1751, 1754, 2152, 2168, 2747, 3647
ApoI	RAATTY	5 cut(s)	743, 2186, 2368, 2518, 3592
ArsI	GACNNNNNNTTYG	2 cut(s)	3375, 3407
AsiGI	ACCGGT	1 cut(s)	3578
Asp718I	GGTACC	2 cut(s)	2287, 2437
AspS9I	GGNCC	4 cut(s)	269, 557, 2540, 3209
AsuC2I	CCSGG	2 cut(s)	474, 1036
AsuII	TTCGAA	1 cut(s)	1216
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	3 cut(s)	269, 557, 2540
BaeGI	GKGCMC	1 cut(s)	3087
BalI	TGGCCA	1 cut(s)	2606
BanI	GGYRCC	3 cut(s)	2287, 2437, 3084
BanII	GRGCYC	1 cut(s)	2115
BarI	GAAGNNNNNNTAC	2 cut(s)	2271, 2303
BbsI	GAAGAC	6 cut(s)	1140, 2895, 3309, 3342, 3381, 3654
Bbv12I	GWGCWC	1 cut(s)	2115
BbvI	GCAGC	6 cut(s)	1741, 1763, 2164, 2180, 2734, 3634
BceAI	ACGGC	1 cut(s)	142
BciVI	GTATCC	2 cut(s)	1954, 2311
BclI	TGATCA	2 cut(s)	592, 2784
BcnI	CCSGG	2 cut(s)	474, 1036
BcoDI	GTCTC	8 cut(s)	1352, 1667, 1877, 1936, 1986, 1991, 3138, 3170
BfaI	CTAG	4 cut(s)	1049, 1326, 2873, 3483
BfmI	CTRYAG	4 cut(s)	2030, 2652, 3141, 3213
BfuAI	ACCTGC	2 cut(s)	2233, 3324
BfuI	GTATCC	2 cut(s)	1954, 2311
BglII	AGATCT	2 cut(s)	1319, 2377
BisI	GCNGC	6 cut(s)	1752, 1755, 2153, 2169, 2748, 3648
BlsI	GCNGC	6 cut(s)	1753, 1756, 2154, 2170, 2749, 3649
Bme18I	GGWCC	3 cut(s)	269, 557, 2540
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	269, 557, 2540, 3209
BmiI	GGNNCC	6 cut(s)	471, 887, 1806, 2289, 2439, 3086
BpiI	GAAGAC	6 cut(s)	1140, 2895, 3309, 3342, 3381, 3654
BplI	GAGNNNNNCTC	6 cut(s)	1112, 1144, 1550, 1582, 3431, 3463
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	3512
Bpu14I	TTCGAA	1 cut(s)	1216
BpuEI	CTTGAG	1 cut(s)	3171
BpuMI	CCSGG	2 cut(s)	474, 1036
BsaAI	YACGTR	1 cut(s)	1841
BsaBI	GATNNNNATC	5 cut(s)	30, 1071, 1602, 2361, 2511
BsaI	GGTCTC	1 cut(s)	1877
BsaWI	WCCGGW	4 cut(s)	436, 559, 3449, 3578
BsaXI	ACNNNNNCTCC	4 cut(s)	3021, 3051, 3590, 3620
Bse118I	RCCGGY	1 cut(s)	3578
Bse1I	ACTGG	6 cut(s)	1015, 1088, 1222, 1923, 1962, 3709
Bse3DI	GCAATG	5 cut(s)	1450, 2636, 2864, 3413, 3720
Bse8I	GATNNNNATC	5 cut(s)	30, 1071, 1602, 2361, 2511
BseAI	TCCGGA	1 cut(s)	559
BseJI	GATNNNNATC	5 cut(s)	30, 1071, 1602, 2361, 2511
BseMI	GCAATG	5 cut(s)	1450, 2636, 2864, 3413, 3720
BseNI	ACTGG	6 cut(s)	1015, 1088, 1222, 1923, 1962, 3709
BseRI	GAGGAG	5 cut(s)	300, 551, 941, 944, 3011
BseSI	GKGCMC	1 cut(s)	3087
BseXI	GCAGC	6 cut(s)	1741, 1763, 2164, 2180, 2734, 3634
BseYI	CCCAGC	1 cut(s)	1039
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	6 cut(s)	121, 604, 1382, 2606, 3033, 3211
BshNI	GGYRCC	3 cut(s)	2287, 2437, 3084
BshTI	ACCGGT	1 cut(s)	3578
BsiHKAI	GWGCWC	1 cut(s)	2115
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	6 cut(s)	437, 473, 560, 1035, 3450, 3579
BslFI	GGGAC	2 cut(s)	287, 1145
BsmAI	GTCTC	8 cut(s)	1352, 1667, 1877, 1936, 1986, 1991, 3138, 3170
BsmBI	CGTCTC	1 cut(s)	1667
BsmFI	GGGAC	2 cut(s)	287, 1145
BsnI	GGCC	6 cut(s)	121, 604, 1382, 2606, 3033, 3211
Bso31I	GGTCTC	1 cut(s)	1877
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	1216
Bsp1286I	GDGCHC	2 cut(s)	2115, 3087
Bsp13I	TCCGGA	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	5 cut(s)	80, 305, 706, 1305, 2258
BspANI	GGCC	6 cut(s)	121, 604, 1382, 2606, 3033, 3211
BspEI	TCCGGA	1 cut(s)	559
BspHI	TCATGA	4 cut(s)	277, 595, 1938, 2884
BspLI	GGNNCC	6 cut(s)	471, 887, 1806, 2289, 2439, 3086
BspMAI	CTGCAG	2 cut(s)	2034, 3217
BspMI	ACCTGC	2 cut(s)	2233, 3324
BspQI	GCTCTTC	1 cut(s)	2103
BspT104I	TTCGAA	1 cut(s)	1216
BspT107I	GGYRCC	3 cut(s)	2287, 2437, 3084
BspTNI	GGTCTC	1 cut(s)	1877
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	5 cut(s)	1450, 2636, 2864, 3413, 3720
BsrFI	RCCGGY	1 cut(s)	3578
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	6 cut(s)	1015, 1088, 1222, 1923, 1962, 3709
BssAI	RCCGGY	1 cut(s)	3578
BssT1I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Bst4CI	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2894, 3142
Bst6I	CTCTTC	6 cut(s)	1141, 1147, 1665, 1727, 2103, 3398
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	1841
BstBI	TTCGAA	1 cut(s)	1216
BstDSI	CCRYGG	2 cut(s)	178, 1780
BstENI	CCTNNNNNAGG	1 cut(s)	2011
BstMAI	GTCTC	8 cut(s)	1352, 1667, 1877, 1936, 1986, 1991, 3138, 3170
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 168, 2038, 2165, 2603, 2612, 3378
BstNSI	RCATGY	3 cut(s)	1175, 1532, 2146
BstSFI	CTRYAG	4 cut(s)	2030, 2652, 3141, 3213
BstSLI	GKGCMC	1 cut(s)	3087
BstV1I	GCAGC	6 cut(s)	1741, 1763, 2164, 2180, 2734, 3634
BstV2I	GAAGAC	6 cut(s)	1140, 2895, 3309, 3342, 3381, 3654
BstX2I	RGATCY	7 cut(s)	677, 1105, 1319, 2003, 2063, 2377, 2390
BstXI	CCANNNNNNTGG	2 cut(s)	762, 882
BstYI	RGATCY	7 cut(s)	677, 1105, 1319, 2003, 2063, 2377, 2390
BsuI	GTATCC	2 cut(s)	1954, 2311
BsuRI	GGCC	6 cut(s)	121, 604, 1382, 2606, 3033, 3211
BtgI	CCRYGG	2 cut(s)	178, 1780
BtgZI	GCGATG	1 cut(s)	2551
BtsI	GCAGTG	7 cut(s)	370, 1216, 2589, 2781, 3119, 3135, 3330
BveI	ACCTGC	2 cut(s)	2233, 3324
CaiI	CAGNNNCTG	5 cut(s)	1757, 2139, 2327, 2477, 2759
CciI	TCATGA	4 cut(s)	277, 595, 1938, 2884
Cfr10I	RCCGGY	1 cut(s)	3578
Cfr13I	GGNCC	4 cut(s)	269, 557, 2540, 3209
CseI	GACGC	1 cut(s)	1145
Csp6I	GTAC	4 cut(s)	13, 2024, 2288, 2438
CspAI	ACCGGT	1 cut(s)	3578
CviQI	GTAC	4 cut(s)	13, 2024, 2288, 2438
DraIII	CACNNNGTG	1 cut(s)	2938
EaeI	YGGCCR	1 cut(s)	2604
Eam1104I	CTCTTC	6 cut(s)	1141, 1147, 1665, 1727, 2103, 3398
EarI	CTCTTC	6 cut(s)	1141, 1147, 1665, 1727, 2103, 3398
Ecl136II	GAGCTC	1 cut(s)	2113
Eco130I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Eco147I	AGGCCT	2 cut(s)	604, 1382
Eco24I	GRGCYC	1 cut(s)	2115
Eco31I	GGTCTC	1 cut(s)	1877
Eco32I	GATATC	2 cut(s)	2953, 3567
Eco47I	GGWCC	3 cut(s)	269, 557, 2540
Eco53kI	GAGCTC	1 cut(s)	2113
Eco57I	CTGAAG	5 cut(s)	867, 1152, 1347, 2676, 2736
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	2113
EcoNI	CCTNNNNNAGG	1 cut(s)	2011
EcoO109I	RGGNCCY	1 cut(s)	2540
EcoRI	GAATTC	3 cut(s)	2186, 2368, 2518
EcoRV	GATATC	2 cut(s)	2953, 3567
EcoT14I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
EcoT22I	ATGCAT	4 cut(s)	829, 1530, 1534, 2853
EcoT38I	GRGCYC	1 cut(s)	2115
ErhI	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Esp3I	CGTCTC	1 cut(s)	1667
FaqI	GGGAC	2 cut(s)	287, 1145
FauI	CCCGC	3 cut(s)	87, 312, 699
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	2 cut(s)	592, 2784
Fnu4HI	GCNGC	6 cut(s)	1752, 1755, 2153, 2169, 2748, 3648
FriOI	GRGCYC	1 cut(s)	2115
Fsp4HI	GCNGC	6 cut(s)	1752, 1755, 2153, 2169, 2748, 3648
FspBI	CTAG	4 cut(s)	1049, 1326, 2873, 3483
GluI	GCNGC	6 cut(s)	1752, 1755, 2153, 2169, 2748, 3648
GsaI	CCCAGC	1 cut(s)	1043
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	6 cut(s)	121, 604, 1382, 2606, 3033, 3211
HapII	CCGG	6 cut(s)	437, 473, 560, 1035, 3450, 3579
HgaI	GACGC	1 cut(s)	1145
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HindIII	AAGCTT	1 cut(s)	2039
HpaI	GTTAAC	1 cut(s)	1018
HpaII	CCGG	6 cut(s)	437, 473, 560, 1035, 3450, 3579
Hpy166II	GTNNAC	2 cut(s)	1018, 2932
Hpy8I	GTNNAC	2 cut(s)	1018, 2932
Hpy99I	CGWCG	1 cut(s)	982
HpyCH4III	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2894, 3142
HpyCH4IV	ACGT	2 cut(s)	441, 1840
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 168, 2038, 2165, 2603, 2612, 3378
HpySE526I	ACGT	2 cut(s)	441, 1840
Kpn2I	TCCGGA	1 cut(s)	559
KpnI	GGTACC	2 cut(s)	2291, 2441
Ksp22I	TGATCA	2 cut(s)	592, 2784
KspAI	GTTAAC	1 cut(s)	1018
LguI	GCTCTTC	1 cut(s)	2103
LmnI	GCTCC	9 cut(s)	193, 325, 538, 703, 797, 891, 1983, 2017, 2647
Lsp1109I	GCAGC	6 cut(s)	1741, 1763, 2164, 2180, 2734, 3634
MaeI	CTAG	4 cut(s)	1049, 1326, 2873, 3483
MaeII	ACGT	2 cut(s)	441, 1840
MaeIII	GTNAC	9 cut(s)	173, 651, 998, 2126, 2245, 2698, 2790, 3233, 3325
MbiI	CCGCTC	1 cut(s)	706
MfeI	CAATTG	1 cut(s)	1003
MflI	RGATCY	7 cut(s)	677, 1105, 1319, 2003, 2063, 2377, 2390
MhlI	GDGCHC	2 cut(s)	2115, 3087
MlsI	TGGCCA	1 cut(s)	2606
MluNI	TGGCCA	1 cut(s)	2606
MlyI	GAGTC	4 cut(s)	455, 1089, 1281, 1403
MmeI	TCCRAC	2 cut(s)	1001, 3594
Mox20I	TGGCCA	1 cut(s)	2606
Mph1103I	ATGCAT	4 cut(s)	829, 1530, 1534, 2853
MroI	TCCGGA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	2606
MseI	TTAA	8 cut(s)	1017, 1548, 1698, 2097, 2733, 3491, 3495, 3626
MslI	CAYNNNNRTG	6 cut(s)	183, 375, 1088, 1176, 2196, 3204
Msp20I	TGGCCA	1 cut(s)	2606
MspA1I	CMGCKG	1 cut(s)	1754
MspI	CCGG	6 cut(s)	437, 473, 560, 1035, 3450, 3579
MunI	CAATTG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	7 cut(s)	138, 168, 2038, 2165, 2603, 2612, 3378
NciI	CCSGG	2 cut(s)	474, 1036
NcoI	CCATGG	1 cut(s)	178
NdeI	CATATG	1 cut(s)	480
NlaIV	GGNNCC	6 cut(s)	471, 887, 1806, 2289, 2439, 3086
NmuCI	GTSAC	5 cut(s)	998, 2245, 2790, 3233, 3325
NsiI	ATGCAT	4 cut(s)	829, 1530, 1534, 2853
NspI	RCATGY	3 cut(s)	1175, 1532, 2146
NspV	TTCGAA	1 cut(s)	1216
OliI	CACNNNNGTG	1 cut(s)	375
PacI	TTAATTAA	1 cut(s)	3495
PaeI	GCATGC	1 cut(s)	1532
PagI	TCATGA	4 cut(s)	277, 595, 1938, 2884
PaqCI	CACCTGC	1 cut(s)	2233
PceI	AGGCCT	2 cut(s)	604, 1382
PciSI	GCTCTTC	1 cut(s)	2103
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	2677
PinAI	ACCGGT	1 cut(s)	3578
PkrI	GCNGC	6 cut(s)	1753, 1756, 2154, 2170, 2749, 3649
PleI	GAGTC	4 cut(s)	455, 1088, 1280, 1403
PpsI	GAGTC	4 cut(s)	455, 1088, 1280, 1403
Ppu21I	YACGTR	1 cut(s)	1841
PpuMI	RGGWCCY	1 cut(s)	2540
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	2115
Psp5II	RGGWCCY	1 cut(s)	2540
PspFI	CCCAGC	1 cut(s)	1039
PspN4I	GGNNCC	6 cut(s)	471, 887, 1806, 2289, 2439, 3086
PspPI	GGNCC	4 cut(s)	269, 557, 2540, 3209
PspPPI	RGGWCCY	1 cut(s)	2540
PstI	CTGCAG	2 cut(s)	2034, 3217
PstNI	CAGNNNCTG	5 cut(s)	1757, 2139, 2327, 2477, 2759
PsuI	RGATCY	7 cut(s)	677, 1105, 1319, 2003, 2063, 2377, 2390
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	1754
RsaI	GTAC	4 cut(s)	14, 2025, 2289, 2439
RsaNI	GTAC	4 cut(s)	13, 2024, 2288, 2438
RseI	CAYNNNNRTG	6 cut(s)	183, 375, 1088, 1176, 2196, 3204
SacI	GAGCTC	1 cut(s)	2115
SapI	GCTCTTC	1 cut(s)	2103
SaqAI	TTAA	8 cut(s)	1017, 1548, 1698, 2097, 2733, 3491, 3495, 3626
SatI	GCNGC	6 cut(s)	1752, 1755, 2153, 2169, 2748, 3648
Sau96I	GGNCC	4 cut(s)	269, 557, 2540, 3209
SchI	GAGTC	4 cut(s)	455, 1089, 1281, 1403
SduI	GDGCHC	2 cut(s)	2115, 3087
SfcI	CTRYAG	4 cut(s)	2030, 2652, 3141, 3213
SfuI	TTCGAA	1 cut(s)	1216
SinI	GGWCC	3 cut(s)	269, 557, 2540
SmiMI	CAYNNNNRTG	6 cut(s)	183, 375, 1088, 1176, 2196, 3204
SmlI	CTYRAG	1 cut(s)	3186
SmoI	CTYRAG	1 cut(s)	3186
SphI	GCATGC	1 cut(s)	1532
SseBI	AGGCCT	2 cut(s)	604, 1382
SsiI	CCGC	5 cut(s)	80, 305, 706, 1305, 2258
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	4 cut(s)	1049, 1326, 2873, 3483
SstI	GAGCTC	1 cut(s)	2115
StuI	AGGCCT	2 cut(s)	604, 1382
StyI	CCWWGG	4 cut(s)	116, 178, 1377, 2007
TaaI	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2894, 3142
TaiI	ACGT	2 cut(s)	444, 1843
TaqI	TCGA	8 cut(s)	334, 447, 1216, 1275, 2283, 2405, 2433, 3009
TaqII	GACCGA	1 cut(s)	3648
TatI	WGTACW	2 cut(s)	12, 2023
Tru1I	TTAA	8 cut(s)	1017, 1548, 1698, 2097, 2733, 3491, 3495, 3626
Tru9I	TTAA	8 cut(s)	1017, 1548, 1698, 2097, 2733, 3491, 3495, 3626
TseFI	GTSAC	5 cut(s)	998, 2245, 2790, 3233, 3325
TseI	GCWGC	6 cut(s)	1751, 1754, 2152, 2168, 2747, 3647
Tsp45I	GTSAC	5 cut(s)	998, 2245, 2790, 3233, 3325
TspGWI	ACGGA	1 cut(s)	736
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	2677
VpaK11BI	GGWCC	3 cut(s)	269, 557, 2540
XagI	CCTNNNNNAGG	1 cut(s)	2011
XapI	RAATTY	5 cut(s)	743, 2186, 2368, 2518, 3592
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	3 cut(s)	1175, 1532, 2146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3101
XspI	CTAG	4 cut(s)	1049, 1326, 2873, 3483
Zsp2I	ATGCAT	4 cut(s)	829, 1530, 1534, 2853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.