Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005668

Physical Location & Seq

Genomic Coordinates Reverse (-)

52837648 .. 52841171

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGAATCCTCCAAACGAATTCCCCGACGATTTTTCGTCTTTCCCTCCTATTCCATTCGCCCTCTTCGTCCCCCCTGAAAACCCTAACCCTAACCCCAACCCTAATTCAACCGCAGCTCCGAGTCAGACCTCAATCGAAGACCCTAGCTCCGCTCATCTACTCTCATTCACGGTCCCGAAGAAGCGGAGGCGAGGCAGGCCTCACCGACCTGCGACGTCGTTTCAGGTACCTCAAATACTCAACGGCGGTTTCAATAGTAACGCCCTTGCTTCTTCTTCTGGCTCAATCTCAATTTCAGCTCATTCGATTAGACACAATGCGGAAAACCCTAGTTCTTCTGCAAAGGCAGGGCCAGATATGTCCGACGAGATCATTGTGATCAATAAGGAGTCCACGGCCGAGGCGTTGATCGCGCTTTCGGCTGGGTTTCCAGCCGATTCCCTCACAGAGGAGGAAATCGATTTCGGGGTTATTCGGGTTATTGGGGGAATAGAGCAGGTCAATTACATTCTCATTCGGAACCATATCATTGCGAAATGGCGCGAAAATGTATCCAATTGGGTCACAAAGGATATTTTTGTTAACTCTATACCCAAGCATTGTCATGCTCTTTTAGACTCTACTTATAACTATCTGGTTTCACATGGATATATTAATTTTGGGATTGCACCGGCCATTAAAGAGAAGATTCCGGCGGAGCCTAGTAAGCCGAGTGTGATTATCATTGGTGCTGGGCTTGCTGGTCTTGCTGCTGCTAGGCAAATGATGCGTTTCGGGTTTAAAGTGACTGTTTTGGAGGGTAGGAAGCGTGCAGGTGGGCGGGTGTATACTAAGAAAATGGAGGGAGGAATTAGGGTGTGTCAAGCAGCGGCGGATTTAGGGGGTAGTGTTTTGACTGGTACATTAGGGAACCCACTTGGCATTGTTGCTCGACAATTGGGCTACTCGCTTCATAAGATTAGAGACAAGTGCCCACTTTATAATGTGGAGGGGAAACCGGTAGATCATGATATGGATATGAAGGTGGAAAGTGTTTTTAACCATCTTTTAGATAAGGCAAGTAGGCTTAGGCAGTTAATGGGTGGGGTTTCGGTTGATGTGTCTCTTGGTTCGGCATTGGAAACATTCTGGCATGTTTCTGGGAATGCTGTGAATGCTGAGGAGATGAACTTGTTCAATTGGCATCTTGCAAATTTGGAATACGCAAATGCAGGTTTACTGTCGAAACTTTCGCTTGCATTTTGGGACCAAGATGATCCATATGATATGGGAGGGGACCATTGCTTCTTACCTGGTGGTAATGGAAGGCTGGTGCAGGCTTTGGCAGAGAATATGCCGATCCTATATGAGAAAACTGTTCACACCATAAGGTATGGTAGTGATGGGGTACAGATTCTTGCTGGAAGCCAGGTTTTTGAGGGTGATATGGTTTTGTGCACTGTTCCTCTTGGTGTTTTGAAGAGTGGGTCCATCAAGTTTATTCCTGAGTTGCCTCAGCGAAAGCTTGATGGAATTAAGAGGTTGGGGTTTGGTTTGTTGAATAAGGTTGCAATGCTTTTTCCTCATGTGTTTTGGGGAACAGATCTTGATACATTTGGCCATCTGTCTGATGATTCAAGCCGTCGAGGGGAATTCTTCCTGTTTTACAGCTATGCAACAGTTGCTGGTGGTCCTCTCTTGCTTGCTTTAGTAGCAGGTGAAGCTGCACATAAGTTTGAGAGCATGCCCCCTACGGATGCTGTGACCCGGGTTCTTCAGATTCTTAAGGGTATTTATGAACCACAAGGAATTAGTGTCCCAGAGCCCATCCAAACAGTCTGTACCAGATGGGGAAGTGACCCCTTCAGCCTCGGTTCTTACTCTAATGTTGCAGTTGGGGCATCAGGAGATGATTATGATATCTTAGCAGAAAGTGTTGGAGATGGGCGACTTTTTTTTGCTGGTGAGGCTACCAATAGGAGATATCCTGCAACTATGCACGGAGCTTTCCTTAGTGGGCTCAGAGAAGCTGCAAATATGGCCAACTATGCTAATGCTCGAGCTCTGAGGATAAAGCTTAACAGGAACCCATCAAAGAATGCCCATTCTTGTGCTTCCCTTCTTGCAGATTTATTCAGAGAGCCTGATTTAGAATTTGGGAGTTTTTCTGTTATTTTTGGTCGAAGAAATGCTGATCCCAAGTCGACAGCAATTTTAAGGGTGACATTTAATGACCCTCGGAAGAAGAGTCATGACGGTTCAAGACCTGATCAACAGCACTCAAATAAGTTACTTTTTCAGCAGCTTCAGTCACATTTTAATCAGCAGCAGCAGCTTCATGTTTACACTTTGTTATCTAGGCAGCAGGCTCTTGAGCTCCGAGAAGTACGAGGTGATGATGAGATGAGGTTGAATTACCTCTGTGAAAAGCTTGGAGTGAAGCTTGTGGGGAGAAAGGGTTTGGGGCCTTCAGCTGATTCTGTAATTGCCTTAATAAAAGCTGAGAGGGGCAATCGTAAACCTGCTTCAACTTTATCATCTTTGAAGTCTGGTACATCGAAGCTGAAACCTGGCACTTTGAAACGAAAATTGGTCAGAAGGGCTAAAATAATGCGCAGCATTAATGCGTCTCCCCTTTCTGCTAATTCAAACTTGGCTATTGGTAAACTCCCAGAGGAAAATAAGAACAGTGTTCAAGTAGTCTCCAACACACTCGGTTCAGGCCAAAACGATTCTGAGGTGTCGAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

910

Amino Acids

99.08

Weight (kDa)

8.99

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	146 - 220	3.3e-14	SWIRM domain
Pyr_redox_2	PF07992	238 - 283	7.6e-06	Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8	PF13450	241 - 299	4.4e-10	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	246 - 673	3.6e-83	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10390 AT3G10390 AT3G10390 AT3G10390
fragaria_vesca	FvH4_7g18750 FvH4_7g18750 FvH4_7g18750 FvH4_7g18750
malus_domestica	MD01G1103000.v1.1
prunus_persica	Prupe.2G208600_v2.0.a1 Prupe.2G208600_v2.0.a1
pyrus_communis	pycom01g12950 pycom07g16350
rosa_chinensis	RchiOBHm_Chr1g0362561
rosa_laevigata	RLG00000027639
rosa_multiflora	Rmu_sc0005725.1_g000006
rosa_roxburghii	Rroxscaffold_4G00293970
rosa_rugosa	Rorug01G0299000 Rorug01G0299100 Rorug01G0299200 Rorug01G0299300 Rorug01G0299300 Rorug01G0299400
rosa_samantha	Rh1AG308200 Rh1BG271200 Rh1CG289100 Rh1DG301600
rosa_wichuraiana	Rw1G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 981
AarI	CACCTGC	2 cut(s)	803, 1685
AatII	GACGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	2594
Acc36I	ACCTGC	6 cut(s)	217, 487, 803, 1202, 1685, 2509
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	2 cut(s)	827, 2183
AccII	CGCG	2 cut(s)	413, 543
AciI	CCGC	9 cut(s)	111, 150, 184, 246, 320, 695, 820, 869, 872
AclWI	GGATC	3 cut(s)	1250, 1333, 2168
AcoI	YGGCCR	4 cut(s)	396, 672, 1597, 2019
AcsI	RAATTY	4 cut(s)	17, 1192, 1631, 2132
AcuI	CTGAAG	4 cut(s)	1739, 1828, 2270, 2433
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	6 cut(s)	228, 901, 1389, 1822, 2367, 2533
AfiI	CCNNNNNNNGG	2 cut(s)	448, 1627
AflII	CTTAAG	1 cut(s)	1763
AgeI	ACCGGT	1 cut(s)	997
AjnI	CCWGG	3 cut(s)	1291, 1407, 2548
AjuI	GAANNNNNNNTTGG	2 cut(s)	2552, 2584
Alw21I	GWGCWC	3 cut(s)	1439, 2044, 2358
Alw26I	GTCTC	4 cut(s)	957, 1107, 2613, 2686
Alw44I	GTGCAC	1 cut(s)	1435
AlwI	GGATC	3 cut(s)	1250, 1333, 2168
AlwNI	CAGNNNCTG	1 cut(s)	1664
Ama87I	CYCGRG	2 cut(s)	1746, 2037
AoxI	GGCC	8 cut(s)	197, 350, 396, 672, 1597, 2019, 2444, 2701
ApaLI	GTGCAC	1 cut(s)	1435
ApoI	RAATTY	4 cut(s)	17, 1192, 1631, 2132
AseI	ATTAAT	2 cut(s)	654, 2601
AsiGI	ACCGGT	1 cut(s)	997
Asp700I	GAANNNNTTC	1 cut(s)	1172
Asp718I	GGTACC	1 cut(s)	226
AspLEI	GCGC	3 cut(s)	415, 543, 2595
AspS9I	GGNCC	7 cut(s)	172, 350, 1246, 1276, 1467, 1670, 2444
AsuC2I	CCSGG	2 cut(s)	1747, 1748
AsuHPI	GGTGA	6 cut(s)	194, 1433, 1709, 1955, 2212, 2384
AvaI	CYCGRG	2 cut(s)	1746, 2037
AvaII	GGWCC	5 cut(s)	172, 1246, 1276, 1467, 1670
BaeGI	GKGCMC	2 cut(s)	974, 1439
BalI	TGGCCA	2 cut(s)	1599, 2021
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	4 cut(s)	1806, 2001, 2044, 2358
BarI	GAAGNNNNNNTAC	2 cut(s)	2488, 2520
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	3 cut(s)	1439, 2044, 2358
BbvCI	CCTCAGC	2 cut(s)	1158, 1494
BccI	CCATC	9 cut(s)	1050, 1376, 1478, 1502, 1608, 1814, 1821, 1916, 2077
BceAI	ACGGC	3 cut(s)	259, 411, 1605
BciT130I	CCWGG	3 cut(s)	1293, 1409, 2550
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	2 cut(s)	378, 2248
BcnI	CCSGG	2 cut(s)	1747, 1748
BcoDI	GTCTC	4 cut(s)	957, 1107, 2613, 2686
BfaI	CTAG	5 cut(s)	144, 330, 702, 756, 2337
BfrI	CTTAAG	1 cut(s)	1763
BfuAI	ACCTGC	6 cut(s)	217, 487, 803, 1202, 1685, 2509
BfuI	GTATCC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	1582
Bme1390I	CCNGG	5 cut(s)	1293, 1409, 1747, 1748, 2550
Bme18I	GGWCC	5 cut(s)	172, 1246, 1276, 1467, 1670
BmeT110I	CYCGRG	2 cut(s)	1746, 2037
BmgT120I	GGNCC	7 cut(s)	172, 350, 1246, 1276, 1467, 1670, 2444
BmrFI	CCNGG	5 cut(s)	1293, 1409, 1747, 1748, 2550
BmsI	GCATC	4 cut(s)	756, 1192, 1726, 1889
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	3 cut(s)	1067, 1158, 1494
BpuEI	CTTGAG	1 cut(s)	2372
BpuMI	CCSGG	2 cut(s)	1747, 1748
Bsa29I	ATCGAT	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	393, 399, 1746, 1849, 2216
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	6 cut(s)	100, 130, 131, 161, 2422, 2452
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 1627
Bse118I	RCCGGY	2 cut(s)	670, 997
Bse1I	ACTGG	1 cut(s)	901
Bse3DI	GCAATG	3 cut(s)	528, 1279, 1557
BseBI	CCWGG	3 cut(s)	1293, 1409, 2550
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	5 cut(s)	393, 399, 1746, 1849, 2216
BseGI	GGATG	2 cut(s)	1741, 1806
BseLI	CCNNNNNNNGG	2 cut(s)	448, 1627
BseMI	GCAATG	3 cut(s)	528, 1279, 1557
BseMII	CTCAG	7 cut(s)	1149, 1476, 1508, 2014, 2036, 2472, 2706
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	2 cut(s)	464, 1175
BseSI	GKGCMC	2 cut(s)	974, 1439
BseX3I	CGGCCG	1 cut(s)	396
BseYI	CCCAGC	2 cut(s)	422, 731
BsgI	GTGCAG	3 cut(s)	831, 1334, 1689
Bsh1236I	CGCG	2 cut(s)	413, 543
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	8 cut(s)	199, 352, 398, 674, 1599, 2021, 2446, 2703
BshNI	GGYRCC	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	997
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	3 cut(s)	1439, 2044, 2358
BsiHKCI	CYCGRG	2 cut(s)	1746, 2037
BsiSI	CCGG	4 cut(s)	671, 692, 998, 1747
BslFI	GGGAC	5 cut(s)	53, 158, 1259, 1289, 1781
BslI	CCNNNNNNNGG	2 cut(s)	448, 1627
BsmAI	GTCTC	4 cut(s)	957, 1107, 2613, 2686
BsmBI	CGTCTC	1 cut(s)	2613
BsmFI	GGGAC	5 cut(s)	53, 158, 1259, 1289, 1781
BsmI	GAATGC	3 cut(s)	1150, 1159, 2083
BsnI	GGCC	8 cut(s)	199, 352, 398, 674, 1599, 2021, 2446, 2703
BsoBI	CYCGRG	2 cut(s)	1746, 2037
Bsp1286I	GDGCHC	6 cut(s)	974, 1439, 1806, 2001, 2044, 2358
Bsp143I	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
BspACI	CCGC	9 cut(s)	111, 150, 184, 246, 320, 695, 820, 869, 872
BspANI	GGCC	8 cut(s)	199, 352, 398, 674, 1599, 2021, 2446, 2703
BspCNI	CTCAG	7 cut(s)	1150, 1477, 1507, 2013, 2037, 2473, 2707
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	2 cut(s)	413, 543
BspHI	TCATGA	2 cut(s)	1006, 2230
BspMI	ACCTGC	6 cut(s)	217, 487, 803, 1202, 1685, 2509
BspPI	GGATC	3 cut(s)	1250, 1333, 2168
BspT107I	GGYRCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	1763
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	3 cut(s)	528, 1279, 1557
BsrFI	RCCGGY	2 cut(s)	670, 997
BsrI	ACTGG	1 cut(s)	901
BssAI	RCCGGY	2 cut(s)	670, 997
BssECI	CCNNGG	5 cut(s)	393, 399, 1746, 1849, 2216
BssMI	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
BssNAI	GTATAC	1 cut(s)	828
BssNI	GRCGYC	1 cut(s)	215
Bst1107I	GTATAC	1 cut(s)	828
Bst2UI	CCWGG	3 cut(s)	1293, 1409, 2550
Bst4CI	ACNGT	9 cut(s)	172, 790, 1221, 1357, 1441, 1660, 1816, 2237, 2669
Bst6I	CTCTTC	3 cut(s)	68, 1454, 2219
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	1763
BstAPI	GCANNNNNTGC	2 cut(s)	766, 1661
BstC8I	GCNNGC	8 cut(s)	197, 738, 810, 1236, 1317, 1683, 1724, 2346
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	1741, 1806
BstFNI	CGCG	2 cut(s)	413, 543
BstHHI	GCGC	3 cut(s)	415, 543, 2595
BstKTI	GATC	9 cut(s)	372, 381, 411, 1006, 1258, 1341, 1585, 2176, 2251
BstMAI	GTCTC	4 cut(s)	957, 1107, 2613, 2686
BstMBI	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	3 cut(s)	1293, 1409, 2550
BstNSI	RCATGY	2 cut(s)	1136, 1726
BstSCI	CCNGG	5 cut(s)	1291, 1407, 1745, 1746, 2548
BstSLI	GKGCMC	2 cut(s)	974, 1439
BstUI	CGCG	2 cut(s)	413, 543
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	1582
BstYI	RGATCY	1 cut(s)	1582
BstZ17I	GTATAC	1 cut(s)	828
BstZI	CGGCCG	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	8 cut(s)	199, 352, 398, 674, 1599, 2021, 2446, 2703
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	1741, 1806
BtsIMutI	CAGTG	2 cut(s)	1437, 2674
BveI	ACCTGC	6 cut(s)	217, 487, 803, 1202, 1685, 2509
Cac8I	GCNNGC	8 cut(s)	197, 738, 810, 1236, 1317, 1683, 1724, 2346
CaiI	CAGNNNCTG	1 cut(s)	1664
CciI	TCATGA	2 cut(s)	1006, 2230
CfoI	GCGC	3 cut(s)	415, 543, 2595
Cfr10I	RCCGGY	2 cut(s)	670, 997
Cfr13I	GGNCC	7 cut(s)	172, 350, 1246, 1276, 1467, 1670, 2444
Cfr9I	CCCGGG	1 cut(s)	1746
ClaI	ATCGAT	1 cut(s)	459
CseI	GACGC	1 cut(s)	2595
CsiI	ACCWGGT	1 cut(s)	1291
Csp6I	GTAC	6 cut(s)	227, 900, 1388, 1821, 2366, 2532
CspAI	ACCGGT	1 cut(s)	997
CviAII	CATG	8 cut(s)	605, 644, 1007, 1133, 1565, 1723, 2231, 2318
CviQI	GTAC	6 cut(s)	227, 900, 1388, 1821, 2366, 2532
DpnI	GATC	9 cut(s)	371, 380, 410, 1005, 1257, 1340, 1584, 2175, 2250
DpnII	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
DraI	TTTAAA	1 cut(s)	781
EaeI	YGGCCR	4 cut(s)	396, 672, 1597, 2019
EagI	CGGCCG	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	68, 1454, 2219
EarI	CTCTTC	3 cut(s)	68, 1454, 2219
EciI	GGCGGA	2 cut(s)	710, 887
Ecl136II	GAGCTC	2 cut(s)	2042, 2356
EclXI	CGGCCG	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	4 cut(s)	1806, 2001, 2044, 2358
Eco32I	GATATC	2 cut(s)	1900, 1964
Eco47I	GGWCC	5 cut(s)	172, 1246, 1276, 1467, 1670
Eco52I	CGGCCG	1 cut(s)	396
Eco53kI	GAGCTC	2 cut(s)	2042, 2356
Eco57I	CTGAAG	4 cut(s)	1739, 1828, 2270, 2433
Eco88I	CYCGRG	2 cut(s)	1746, 2037
EcoICRI	GAGCTC	2 cut(s)	2042, 2356
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	2444
EcoRI	GAATTC	2 cut(s)	17, 1631
EcoRII	CCWGG	3 cut(s)	1291, 1407, 2548
EcoRV	GATATC	2 cut(s)	1900, 1964
EcoT38I	GRGCYC	4 cut(s)	1806, 2001, 2044, 2358
Esp3I	CGTCTC	1 cut(s)	2613
FaeI	CATG	8 cut(s)	608, 647, 1010, 1136, 1568, 1726, 2234, 2321
FaqI	GGGAC	5 cut(s)	53, 158, 1259, 1289, 1781
FatI	CATG	8 cut(s)	604, 643, 1006, 1132, 1564, 1722, 2230, 2317
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	1261
FbaI	TGATCA	2 cut(s)	378, 2248
FblI	GTMKAC	2 cut(s)	827, 2183
FokI	GGATG	2 cut(s)	1748, 1793
FriOI	GRGCYC	4 cut(s)	1806, 2001, 2044, 2358
FspBI	CTAG	5 cut(s)	144, 330, 702, 756, 2337
FspI	TGCGCA	1 cut(s)	2594
GlaI	GCGC	3 cut(s)	414, 542, 2594
GsaI	CCCAGC	2 cut(s)	426, 735
HaeIII	GGCC	8 cut(s)	199, 352, 398, 674, 1599, 2021, 2446, 2703
HapII	CCGG	4 cut(s)	671, 692, 998, 1747
HgaI	GACGC	1 cut(s)	2595
HhaI	GCGC	3 cut(s)	415, 543, 2595
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	8 cut(s)	608, 647, 1010, 1136, 1568, 1726, 2234, 2321
Hin6I	GCGC	3 cut(s)	413, 541, 2593
HinP1I	GCGC	3 cut(s)	413, 541, 2593
HincII	GTYRAC	2 cut(s)	583, 2184
HindII	GTYRAC	2 cut(s)	583, 2184
HindIII	AAGCTT	4 cut(s)	1502, 2054, 2408, 2420
HpaI	GTTAAC	1 cut(s)	583
HpaII	CCGG	4 cut(s)	671, 692, 998, 1747
HphI	GGTGA	6 cut(s)	194, 1433, 1709, 1955, 2212, 2384
Hpy188III	TCNNGA	8 cut(s)	175, 1007, 1484, 1586, 1884, 2231, 2241, 2351
Hpy99I	CGWCG	5 cut(s)	29, 217, 220, 368, 1626
HpyAV	CCTTC	6 cut(s)	1015, 1299, 1852, 2108, 2457, 2571
HpyCH4III	ACNGT	9 cut(s)	172, 790, 1221, 1357, 1441, 1660, 1816, 2237, 2669
HpyCH4IV	ACGT	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	8 cut(s)	608, 647, 1010, 1136, 1568, 1726, 2234, 2321
HspAI	GCGC	3 cut(s)	413, 541, 2593
KpnI	GGTACC	1 cut(s)	230
Ksp22I	TGATCA	2 cut(s)	378, 2248
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
LmnI	GCTCC	5 cut(s)	121, 152, 697, 1982, 2361
LweI	GCATC	4 cut(s)	756, 1192, 1726, 1889
MabI	ACCWGGT	1 cut(s)	1291
MaeI	CTAG	5 cut(s)	144, 330, 702, 756, 2337
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	8 cut(s)	257, 562, 784, 1741, 1835, 2200, 2268, 2289
MalI	GATC	9 cut(s)	371, 380, 410, 1005, 1257, 1340, 1584, 2175, 2250
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
MfeI	CAATTG	3 cut(s)	556, 935, 1177
MflI	RGATCY	1 cut(s)	1582
MhlI	GDGCHC	6 cut(s)	974, 1439, 1806, 2001, 2044, 2358
MlsI	TGGCCA	2 cut(s)	1599, 2021
MluNI	TGGCCA	2 cut(s)	1599, 2021
MlyI	GAGTC	4 cut(s)	130, 398, 611, 2236
MmeI	TCCRAC	3 cut(s)	387, 1897, 2709
Mox20I	TGGCCA	2 cut(s)	1599, 2021
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	2 cut(s)	1599, 2021
MslI	CAYNNNNRTG	2 cut(s)	603, 2088
Msp20I	TGGCCA	2 cut(s)	1599, 2021
MspA1I	CMGCKG	2 cut(s)	869, 2453
MspCI	CTTAAG	1 cut(s)	1763
MspI	CCGG	4 cut(s)	671, 692, 998, 1747
MspR9I	CCNGG	5 cut(s)	1293, 1409, 1747, 1748, 2550
MunI	CAATTG	3 cut(s)	556, 935, 1177
Mva1269I	GAATGC	3 cut(s)	1150, 1159, 2083
MvaI	CCWGG	3 cut(s)	1293, 1409, 2550
MvnI	CGCG	2 cut(s)	413, 543
NciI	CCSGG	2 cut(s)	1747, 1748
NdeI	CATATG	1 cut(s)	1261
NdeII	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
NlaIII	CATG	8 cut(s)	608, 647, 1010, 1136, 1568, 1726, 2234, 2321
NmeAIII	GCCGAG	2 cut(s)	424, 735
NmuCI	GTSAC	6 cut(s)	562, 784, 1741, 1835, 2200, 2289
NsbI	TGCGCA	1 cut(s)	2594
NspI	RCATGY	2 cut(s)	1136, 1726
PaeI	GCATGC	1 cut(s)	1726
PaeR7I	CTCGAG	1 cut(s)	2037
PagI	TCATGA	2 cut(s)	1006, 2230
PaqCI	CACCTGC	2 cut(s)	803, 1685
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 63, 401
PctI	GAATGC	3 cut(s)	1150, 1159, 2083
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	8 cut(s)	4, 437, 688, 1393, 1613, 1759, 2456, 2711
PinAI	ACCGGT	1 cut(s)	997
PleI	GAGTC	4 cut(s)	129, 397, 611, 2235
PpsI	GAGTC	4 cut(s)	129, 397, 611, 2235
PshBI	ATTAAT	2 cut(s)	654, 2601
PsiI	TTATAA	2 cut(s)	627, 981
Psp124BI	GAGCTC	2 cut(s)	2044, 2358
Psp6I	CCWGG	3 cut(s)	1291, 1407, 2548
PspFI	CCCAGC	2 cut(s)	422, 731
PspGI	CCWGG	3 cut(s)	1291, 1407, 2548
PspPI	GGNCC	7 cut(s)	172, 350, 1246, 1276, 1467, 1670, 2444
PspXI	VCTCGAGB	1 cut(s)	2037
PstNI	CAGNNNCTG	1 cut(s)	1664
PsuI	RGATCY	1 cut(s)	1582
PvuII	CAGCTG	1 cut(s)	2453
RsaI	GTAC	6 cut(s)	228, 901, 1389, 1822, 2367, 2533
RsaNI	GTAC	6 cut(s)	227, 900, 1388, 1821, 2366, 2532
RseI	CAYNNNNRTG	2 cut(s)	603, 2088
SacI	GAGCTC	2 cut(s)	2044, 2358
SalI	GTCGAC	1 cut(s)	2182
Sau3AI	GATC	9 cut(s)	369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
Sau96I	GGNCC	7 cut(s)	172, 350, 1246, 1276, 1467, 1670, 2444
SchI	GAGTC	4 cut(s)	130, 398, 611, 2236
ScrFI	CCNGG	5 cut(s)	1293, 1409, 1747, 1748, 2550
SduI	GDGCHC	6 cut(s)	974, 1439, 1806, 2001, 2044, 2358
SexAI	ACCWGGT	1 cut(s)	1291
SfaNI	GCATC	4 cut(s)	756, 1192, 1726, 1889
Sfr274I	CTCGAG	1 cut(s)	2037
SinI	GGWCC	5 cut(s)	172, 1246, 1276, 1467, 1670
SlaI	CTCGAG	1 cut(s)	2037
SmaI	CCCGGG	1 cut(s)	1748
SmiMI	CAYNNNNRTG	2 cut(s)	603, 2088
SmlI	CTYRAG	3 cut(s)	1763, 2037, 2351
SmoI	CTYRAG	3 cut(s)	1763, 2037, 2351
SphI	GCATGC	1 cut(s)	1726
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	9 cut(s)	111, 150, 184, 246, 320, 695, 820, 869, 872
SspMI	CTAG	5 cut(s)	144, 330, 702, 756, 2337
SstI	GAGCTC	2 cut(s)	2044, 2358
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	5 cut(s)	1291, 1407, 1745, 1746, 2548
TaaI	ACNGT	9 cut(s)	172, 790, 1221, 1357, 1441, 1660, 1816, 2237, 2669
TaiI	ACGT	1 cut(s)	218
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	8 cut(s)	4, 437, 688, 1393, 1613, 1759, 2456, 2711
TscAI	CASTG	2 cut(s)	1444, 2674
TseFI	GTSAC	6 cut(s)	562, 784, 1741, 1835, 2200, 2289
Tsp45I	GTSAC	6 cut(s)	562, 784, 1741, 1835, 2200, 2289
TspDTI	ATGAA	6 cut(s)	17, 941, 1034, 1181, 1791, 2306
TspGWI	ACGGA	2 cut(s)	1748, 1995
TspMI	CCCGGG	1 cut(s)	1746
TspRI	CASTG	2 cut(s)	1444, 2674
Vha464I	CTTAAG	1 cut(s)	1763
VneI	GTGCAC	1 cut(s)	1435
VpaK11BI	GGWCC	5 cut(s)	172, 1246, 1276, 1467, 1670
VspI	ATTAAT	2 cut(s)	654, 2601
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	4 cut(s)	17, 1192, 1631, 2132
XceI	RCATGY	2 cut(s)	1136, 1726
XhoI	CTCGAG	1 cut(s)	2037
XmaI	CCCGGG	1 cut(s)	1746
XmiI	GTMKAC	2 cut(s)	827, 2183
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	5 cut(s)	144, 330, 702, 756, 2337
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.