pycom07g16350

Lysine-specific histone demethylase 1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
18753209 .. 18754956
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16350.2

Sequence Viewer

Length: 1290 bp
ATGGATCCGCCAAACAAATTCCCCGATGATTTTTCTTCCTTTCCTCCGATCCCCTACACCCTTTTTGAGCCCCCAGAATGTCCAATCCCTAAACCTAATTCAAACGCACGGCCGATTCCAAACACAGTCGAAAACCCTAGCTCCGCCCATCTTCTTTCTTTCTTTCCCAAAGAAACGAAGACGAGGCACGCCTCATTGCGTTGCGACGTCATTTCAGCTCCGAAGGCGCTGATCGCCCTCTCGGCTGGTTTTCCTGCCGATTCCCTCACTGAAGAGGAAATCGATTTCCCGGTAATTCAAGTTATTAGGGGATTAGAGCAGGTCAATTACATTATCATTAGAAACCATATAATTATGTTTGTTGATTCTATACCTAAGCATTGCCATTCCCTTTTGGAATCTACTTATAAGTATCTAGTTTCACATGGATATATTAACTTTGGGATTGCTCCAGCTATTAAAGAGAAGATTCCGGCTGAGCCCAGTAAACCACATGTGATTGTGATTGGTGATTGGCTTGCTGGTCTGGCTGCTGCCAGATTTAGGTGGAAGTGTTTTAACTGGCACATTAGGGAACCCACTCGGCATTGTTGCATGCCAATTGAGTTTGTGCTTCATAAAGTGAGAGACAAGTGCCCACTTTATAGTTTTGATGGGAAACCTGTAGACCCTCATATGGATATGAAGGTGGAAGCAGCTTTTAATCATCTGTTAGATAAGGCAAGTAGCCTTAGGCAGTTAATGAGGGGTGTTTCAGTTGATGTGTCTCTTGGTGCAGCACTGGAAACGTTCTGGCAGGCAGTAGATGCTGAGGAGGCGAACTTGTTTAATTGGCATCTTGCAAATTTGGAATATGCAAATGCAGATTTAATATCTAAACTGTCACGTGCATTTTGGGACCAAGATGATCCATATGACATGGGAGGAGACCATTGGTGCCCGCTTGGGGTTTTGAAAAGCGGGTCCATCAAGTTTAATCTAGAGTTGCCTCAGAGAAAGCTTGATGGAATAAAGAGGGTGAGGTTCAGACCATTGAATAAGGTTGCAATGCTTTTTCTTCATGTGTTTTGGGGCACAGATCTTGATACCTTCCGGATCGATCTAAGCCGTCGAGGAGAGTTCTTCTTGTTTTACAGTTATGCAACTGCTGCTGGCGGTCCCTTTTTGATAGCTTTAGTAGCAGGTGAAGCTGCACATAAGTTTGAGACCATGCCCCCTACAATTGCTGTGACTCGGGTTATTCAGATTATCGAGGGTAATCCTTTCATTCTTTTAACTTTGGTTATATGA

Protein Analysis

430

Amino Acids

48.46

Weight (kDa)

6.47

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AarI CACCTGC 1 cut(s) 1172
AatII GACGTC 1 cut(s) 210
Acc36I ACCTGC 2 cut(s) 310, 1172
AccB1I GGYRCC 1 cut(s) 936
AccI GTMKAC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 1092
AciI CCGC 5 cut(s) 8, 144, 941, 960, 1155
AclI AACGTT 1 cut(s) 788
AclWI GGATC 4 cut(s) 12, 43, 902, 1103
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 2 cut(s) 17, 844
AcuI CTGAAG 1 cut(s) 291
AcvI CACGTG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 207
AfiI CCNNNNNNNGG 3 cut(s) 543, 676, 946
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 102, 299, 955, 1036
AluBI AGCT 7 cut(s) 141, 218, 455, 698, 1000, 1172, 1190
AluI AGCT 7 cut(s) 141, 218, 455, 698, 1000, 1172, 1190
Alw26I GTCTC 4 cut(s) 621, 771, 921, 1199
AlwI GGATC 4 cut(s) 12, 43, 902, 1103
Ama87I CYCGRG 1 cut(s) 1233
Aor13HI TCCGGA 1 cut(s) 1092
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 6 cut(s) 530, 533, 695, 776, 1148, 1190
ApoI RAATTY 2 cut(s) 17, 844
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 898, 963, 1157
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 521, 1030, 1196
AvaI CYCGRG 1 cut(s) 1233
AvaII GGWCC 3 cut(s) 898, 963, 1157
AxyI CCTNAGG 1 cut(s) 731
BaeGI GKGCMC 3 cut(s) 638, 941, 1076
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 936
BanII GRGCYC 2 cut(s) 72, 483
BbrPI CACGTG 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 6 cut(s) 517, 520, 707, 788, 1135, 1177
BccI CCATC 4 cut(s) 156, 647, 974, 998
BceAI ACGGC 2 cut(s) 125, 1092
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 4 cut(s) 621, 771, 921, 1199
BfaI CTAG 3 cut(s) 138, 416, 980
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 2 cut(s) 310, 1172
BglI GCCNNNNNGGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 1078
BisI GCNGC 6 cut(s) 531, 534, 696, 777, 1149, 1191
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 6 cut(s) 532, 535, 697, 778, 1150, 1192
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 3 cut(s) 898, 963, 1157
BmeT110I CYCGRG 1 cut(s) 1233
BmgT120I GGNCC 3 cut(s) 898, 963, 1157
BmiI GGNNCC 6 cut(s) 6, 576, 899, 938, 964, 1159
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 796, 844
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 2 cut(s) 375, 810
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 2 cut(s) 282, 1098
BsaAI YACGTR 1 cut(s) 887
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 921, 1199
BsaWI WCCGGW 1 cut(s) 1092
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 543, 676, 946
Bse1I ACTGG 3 cut(s) 483, 566, 786
Bse21I CCTNAGG 1 cut(s) 731
Bse3DI GCAATG 3 cut(s) 194, 379, 1053
BseAI TCCGGA 1 cut(s) 1092
BseCI ATCGAT 2 cut(s) 282, 1098
BseLI CCNNNNNNNGG 3 cut(s) 543, 676, 946
BseMI GCAATG 3 cut(s) 194, 379, 1053
BseMII CTCAG 3 cut(s) 468, 801, 1004
BseNI ACTGG 3 cut(s) 483, 566, 786
BseRI GAGGAG 3 cut(s) 827, 939, 1128
BseSI GKGCMC 3 cut(s) 638, 941, 1076
BseX3I CGGCCG 1 cut(s) 110
BseXI GCAGC 6 cut(s) 517, 520, 707, 788, 1135, 1177
BsgI GTGCAG 2 cut(s) 795, 1176
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 936
BshVI ATCGAT 2 cut(s) 282, 1098
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 1233
BsiSI CCGG 3 cut(s) 290, 473, 1093
BslFI GGGAC 2 cut(s) 911, 1143
BslI CCNNNNNNNGG 3 cut(s) 543, 676, 946
BsmAI GTCTC 4 cut(s) 621, 771, 921, 1199
BsmFI GGGAC 2 cut(s) 911, 1143
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 2 cut(s) 921, 1199
BsoBI CYCGRG 1 cut(s) 1233
Bsp1286I GDGCHC 5 cut(s) 72, 483, 638, 941, 1076
Bsp13I TCCGGA 1 cut(s) 1092
Bsp143I GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 5 cut(s) 8, 144, 941, 960, 1155
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 3 cut(s) 469, 802, 1003
BspDI ATCGAT 2 cut(s) 282, 1098
BspEI TCCGGA 1 cut(s) 1092
BspLI GGNNCC 6 cut(s) 6, 576, 899, 938, 964, 1159
BspMI ACCTGC 2 cut(s) 310, 1172
BspPI GGATC 4 cut(s) 12, 43, 902, 1103
BspT107I GGYRCC 1 cut(s) 936
BspTNI GGTCTC 2 cut(s) 921, 1199
BsrDI GCAATG 3 cut(s) 194, 379, 1053
BsrI ACTGG 3 cut(s) 483, 566, 786
BssMI GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
BssNI GRCGYC 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 127, 882, 1136
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 2 cut(s) 806, 1148
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 6 cut(s) 189, 519, 596, 798, 941, 1153
BstDEI CTNAG 6 cut(s) 375, 477, 731, 810, 990, 1103
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 7 cut(s) 7, 51, 234, 910, 1081, 1098, 1102
BstMAI GTCTC 4 cut(s) 621, 771, 921, 1199
BstMBI GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 9 cut(s) 224, 233, 242, 527, 806, 815, 1148, 1178, 1187
BstNSI RCATGY 2 cut(s) 497, 598
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 3 cut(s) 638, 941, 1076
BstV1I GCAGC 6 cut(s) 517, 520, 707, 788, 1135, 1177
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 4, 1078
BstYI RGATCY 2 cut(s) 4, 1078
BstZI CGGCCG 1 cut(s) 110
Bsu15I ATCGAT 2 cut(s) 282, 1098
Bsu36I CCTNAGG 1 cut(s) 731
BsuRI GGCC 1 cut(s) 112
BsuTUI ATCGAT 2 cut(s) 282, 1098
BtsIMutI CAGTG 2 cut(s) 267, 779
BveI ACCTGC 2 cut(s) 310, 1172
Cac8I GCNNGC 6 cut(s) 189, 519, 596, 798, 941, 1153
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 898, 963, 1157
ClaI ATCGAT 2 cut(s) 282, 1098
CviAII CATG 6 cut(s) 425, 494, 595, 919, 1061, 1210
DdeI CTNAG 6 cut(s) 375, 477, 731, 810, 990, 1103
DpnI GATC 7 cut(s) 6, 50, 233, 909, 1080, 1097, 1101
DpnII GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
EaeI YGGCCR 1 cut(s) 110
EagI CGGCCG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 110
Eco24I GRGCYC 2 cut(s) 72, 483
Eco31I GGTCTC 2 cut(s) 921, 1199
Eco47I GGWCC 3 cut(s) 898, 963, 1157
Eco52I CGGCCG 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 291
Eco72I CACGTG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 1233
EcoT38I GRGCYC 2 cut(s) 72, 483
FaeI CATG 6 cut(s) 428, 497, 598, 922, 1064, 1213
FaqI GGGAC 2 cut(s) 911, 1143
FatI CATG 6 cut(s) 424, 493, 594, 918, 1060, 1209
FauI CCCGC 2 cut(s) 948, 953
FauNDI CATATG 2 cut(s) 675, 913
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 531, 534, 696, 777, 1149, 1191
FriOI GRGCYC 2 cut(s) 72, 483
Fsp4HI GCNGC 6 cut(s) 531, 534, 696, 777, 1149, 1191
FspBI CTAG 3 cut(s) 138, 416, 980
GlaI GCGC 1 cut(s) 228
GluI GCNGC 6 cut(s) 531, 534, 696, 777, 1149, 1191
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 112
HapII CCGG 3 cut(s) 290, 473, 1093
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 6 cut(s) 428, 497, 598, 922, 1064, 1213
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 6 cut(s) 115, 260, 365, 398, 469, 1231
HpaII CCGG 3 cut(s) 290, 473, 1093
HphI GGTGA 3 cut(s) 521, 1030, 1196
Hpy166II GTNNAC 2 cut(s) 488, 667
Hpy188I TCNGA 5 cut(s) 48, 222, 993, 1028, 1245
Hpy188III TCNNGA 3 cut(s) 980, 1082, 1093
Hpy8I GTNNAC 2 cut(s) 488, 667
Hpy99I CGWCG 2 cut(s) 209, 1113
HpyAV CCTTC 3 cut(s) 217, 679, 1099
HpyCH4III ACNGT 3 cut(s) 127, 882, 1136
HpyCH4IV ACGT 3 cut(s) 207, 788, 886
HpyCH4V TGCA 9 cut(s) 594, 776, 842, 857, 863, 890, 1046, 1142, 1193
HpyF10VI GCNNNNNNNGC 9 cut(s) 224, 233, 242, 527, 806, 815, 1148, 1178, 1187
HpyF3I CTNAG 6 cut(s) 375, 477, 731, 810, 990, 1103
HpySE526I ACGT 3 cut(s) 207, 788, 886
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 6 cut(s) 428, 497, 598, 922, 1064, 1213
HspAI GCGC 1 cut(s) 227
Kpn2I TCCGGA 1 cut(s) 1092
Kzo9I GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
LmnI GCTCC 3 cut(s) 146, 223, 454
Lsp1109I GCAGC 6 cut(s) 517, 520, 707, 788, 1135, 1177
LweI GCATC 2 cut(s) 796, 844
MaeI CTAG 3 cut(s) 138, 416, 980
MaeII ACGT 3 cut(s) 207, 788, 886
MaeIII GTNAC 2 cut(s) 882, 1228
MalI GATC 7 cut(s) 6, 50, 233, 909, 1080, 1097, 1101
MboI GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
MboII GAAGA 7 cut(s) 27, 143, 190, 284, 478, 1049, 1114
MfeI CAATTG 2 cut(s) 600, 1221
MflI RGATCY 2 cut(s) 4, 1078
MhlI GDGCHC 5 cut(s) 72, 483, 638, 941, 1076
MluCI AATT 9 cut(s) 17, 97, 294, 325, 351, 600, 829, 844, 1221
MlyI GAGTC 1 cut(s) 1225
MroI TCCGGA 1 cut(s) 1092
MseI TTAA 9 cut(s) 435, 459, 558, 702, 740, 828, 869, 975, 1274
MspI CCGG 3 cut(s) 290, 473, 1093
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 2 cut(s) 600, 1221
MwoI GCNNNNNNNGC 9 cut(s) 224, 233, 242, 527, 806, 815, 1148, 1178, 1187
NciI CCSGG 1 cut(s) 290
NdeI CATATG 2 cut(s) 675, 913
NdeII GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
NlaIII CATG 6 cut(s) 428, 497, 598, 922, 1064, 1213
NlaIV GGNNCC 6 cut(s) 6, 576, 899, 938, 964, 1159
NmeAIII GCCGAG 2 cut(s) 221, 562
NmuCI GTSAC 2 cut(s) 882, 1228
NspI RCATGY 2 cut(s) 497, 598
PaeI GCATGC 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 1172
PciI ACATGT 1 cut(s) 493
PfeI GAWTC 5 cut(s) 115, 260, 365, 398, 469
PkrI GCNGC 6 cut(s) 532, 535, 697, 778, 1150, 1192
PleI GAGTC 1 cut(s) 1225
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 1 cut(s) 1225
Ppu21I YACGTR 1 cut(s) 887
PscI ACATGT 1 cut(s) 493
PsiI TTATAA 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 788
PspCI CACGTG 1 cut(s) 887
PspN4I GGNNCC 6 cut(s) 6, 576, 899, 938, 964, 1159
PspPI GGNCC 3 cut(s) 898, 963, 1157
PsuI RGATCY 2 cut(s) 4, 1078
SaqAI TTAA 9 cut(s) 435, 459, 558, 702, 740, 828, 869, 975, 1274
SatI GCNGC 6 cut(s) 531, 534, 696, 777, 1149, 1191
Sau3AI GATC 7 cut(s) 4, 48, 231, 907, 1078, 1095, 1099
Sau96I GGNCC 3 cut(s) 898, 963, 1157
SchI GAGTC 1 cut(s) 1225
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 5 cut(s) 72, 483, 638, 941, 1076
SfaNI GCATC 2 cut(s) 796, 844
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 3 cut(s) 898, 963, 1157
SphI GCATGC 1 cut(s) 598
Sse9I AATT 9 cut(s) 17, 97, 294, 325, 351, 600, 829, 844, 1221
SsiI CCGC 5 cut(s) 8, 144, 941, 960, 1155
SspMI CTAG 3 cut(s) 138, 416, 980
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 127, 882, 1136
TaiI ACGT 3 cut(s) 210, 791, 889
TaqI TCGA 5 cut(s) 129, 282, 1098, 1111, 1251
TasI AATT 9 cut(s) 17, 97, 294, 325, 351, 600, 829, 844, 1221
TfiI GAWTC 5 cut(s) 115, 260, 365, 398, 469
Tru1I TTAA 9 cut(s) 435, 459, 558, 702, 740, 828, 869, 975, 1274
Tru9I TTAA 9 cut(s) 435, 459, 558, 702, 740, 828, 869, 975, 1274
TscAI CASTG 2 cut(s) 274, 786
TseFI GTSAC 2 cut(s) 882, 1228
TseI GCWGC 6 cut(s) 530, 533, 695, 776, 1148, 1190
Tsp45I GTSAC 2 cut(s) 882, 1228
TspDTI ATGAA 4 cut(s) 605, 698, 1049, 1255
TspRI CASTG 2 cut(s) 274, 786
VpaK11BI GGWCC 3 cut(s) 898, 963, 1157
XapI RAATTY 2 cut(s) 17, 844
XbaI TCTAGA 1 cut(s) 979
XceI RCATGY 2 cut(s) 497, 598
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 3 cut(s) 138, 416, 980
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.