Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005668

Physical Location & Seq

Genomic Coordinates Forward (+)

13442522 .. 13446159

Gene Structure 3638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGAATCCTCCAAACGAATTCCCCGACGACTTTTCGTCTTTCCCTCCTATTCCATTCGCCCTCTTCGTCCCCCCTGAAAACCCTAACCCTAATCCCAACCCTAATTCAACCGCAGCTCCGAGTCAGACCTCAATCGAAGACCTTAGCTCTGCTCATCTACTTTCATTCACGGTCCCGAAGAAGCGGAGGCGAGGCAGGCCTCACCGACCTGCGACGTCGTTTCAGGTACCTCAAATACTCAACGGCGGTTTCAATAGTAACGCTCTTGCTTCTTCTTCTGGCTCAATTTCAGCTCATTCGATTAGACACAATGCGGAAAACCCTAGTTCTTCTGCAAAGGCAGGGCCGGATATGTCCGACGAGATCATTGTGATCAACAAGGAGTCCACGGCCGAGGCGTTGATCGCGCTCTCGGCTGGGTTTCCAGCGGATTCTCTCACAGAGGAGGAAATCGATTTCGGGGTTATTCGGGTTATTGGGGGAATAGAGCAGGTCAATTACATTCTCATTCGGAACCATATCATTGCGAAATGGCGCGAAAATGTGTCCAATTGGGTCACAAAGGATATTTTTGTTAACTCTATACCCAAGCATTGTCATGCTCTTTTAGACTCTACTTATAACTATCTGGTTTCACATGGATATATTAATTTTGGGATTGCACCGTCCATTAAAGAGAAGATTCCGGCGGAGCCCAGTAAGCCGAGTGTGATTATCATTGGTGCTGGGCTTGCTGGTCTTGCTGCTGCCAGGCAAATGATGCGTTTCGGGTTTAAAGTGACTGTTTTGGAGGGTAGGAAGCGTGCAGGTGGGCGGGTGTATACTAAGAAAATGGAGGGAGGAACTAGGGTATGTCAAGCAGCGGCGGATTTAGGTGGTAGTGTTTTGACTGGTACATTAGGGAACCCACTTGGCATTGTTGCTCGACAATTGGGCTACTTGCTTCATAAGATTAGAGACAAGTGCCCACTTTATAATGTGGAGGGGAAACCGGTAGATCATGATATGGATATGAAGGTGGAAAGTGTTTTTAACCATCTTTTGGATAAGGCAAGTAGGCTTAGGCAGTTAATGGGTGGGGTTTCGGTTGATGTGTCTCTTGGTTCGGCATTGGAAACATTCTGGCATGTTTCTGGGAATGCTGTGAATGCTGAGGAGATGAACTTGTTTAATTGGCATCTTGCGAATTTGGAATACGCAAATGCAGGTTTACTGTCAAAACTTTCGCTTGCATTTTGGGACCAAGATGATCCATATGATATGGGAGGGGACCATTGCTTCTTACCTGGTGGTAATGGAAGGCTGGTGCAGGCTTTGGCAGAGAATGTGCCGATCCTTTATGAGAAAACTGTTCACACCATAAGGTATGGTAGTGACGGGGTACAGATTCTTGCTGGAAGCCAGGTTTTTGAGGGTGATATGGTTTTGTGCACTGTTCCGCTTGGTGTTTTGAAGAGTGGGTCCATCAAGTTTATTCCTGAGTTGCCTCAGCGAAAGCTTGATGGAATTAAGAGGTTGGGGTTTGGTTTGTTGAATAAGGTCGCAATGCTTTTTCCTCATGTGTTTTGGGGCACAGATCTTGATACATTCGGCCATCTGTCTGATGATTCAAGCCGTCGAGGGGAATTCTTCCTGTTTTACAGCTATGCAACAGTTGCTGGTGGTCCTCTCTTGCTTGCTTTAGTAGCAGGTGAAGCTGCACATAAGTTTGAGAGCATGCCCCCTACGGATGCTGTGACCCGGGTTCTTCAGATTCTTAAGGGTATTTATGAACCACAAGGAATTAGTGTCCCAGAGCCCATCCAAACAGTCTGTACCAGATGGGGAAGTGACCCCTTCAGCCTCGGTTCGTACTCTAATGTTGCAGTTGGGGCATCAGGAGATGATTATGATATCTTAGCAGAAAGTGTTGGAGATGGGCGACTTTTCTTTGCCGGTGAGGCTACCAATAGGAGATATCCTGCAACTATGCACGGAGCTTTCCTTAGTGGGCTCAGAGAAGCTGCAAATATGGCCAACTATGCTAATGCTCGAGCTCTGAGGATAAAGCTTAACAGGAACCCATCAAAGAATGCCCATTCTTGTGCTTCCCTTCTTGCAGATTTATTCAGAGAACCAGATTTAGAATTTGGGAGTTTTTCTGTTATTTTTGGTCGAAGAAATGCTGATCCCAAGTCGACAGCAGTTTTAAGGGTGACATTTAATGACCCTCGGAAGAAGAGTCATGACGGTTCAAGACCTGATCAACAGCACTCAAATAAGTTACTTTTTCAGCAGCTTCAGTCACATTTTAATCAGCAGCAGCAGCTTCATGTTTACACTTTGTTATCTAGGCAGCAGGCTCTTGAGCTCCGAGAAGTACGAGGTGGTGATGAGATGAGGTTGAATCACCTCTGTGAAAAGCTTGGAGTGAAGCTTGTGGGGAGAAAGGGTTTGGGGCCTTCAGCTGATTCTGTAATTGCCTTAATAAAAGCTGAGAGGGGCAATCGTAAACCTGCTTCAACTTTATCATCTTTGAAGTCTGGTACATCGAAGCTGAAACCTGGCACTTTGAAACGAAAATTGGTCAGAAGGGCTAAAATAATGCGCAGCATTAATGCGTCTCCCCTTTCTGCTAATTCGAACTTGGCTATTGGTAAACTCCCAGAGGAAAATAAGAACAGTGTTCAAGTAGTCTCCAACACACTCGATTCAGGCCAAAACGATTCTGAGGTGTTGAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

909

Amino Acids

98.88

Weight (kDa)

8.99

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	144 - 218	3.3e-14	SWIRM domain
Pyr_redox_2	PF07992	236 - 280	8.8e-06	Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8	PF13450	239 - 297	4.3e-10	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	244 - 671	6e-84	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10390 AT3G10390 AT3G10390 AT3G10390
fragaria_vesca	FvH4_7g18750 FvH4_7g18750 FvH4_7g18750 FvH4_7g18750
malus_domestica	MD01G1103000.v1.1
prunus_persica	Prupe.2G208600_v2.0.a1 Prupe.2G208600_v2.0.a1
pyrus_communis	pycom01g12950 pycom07g16350
rosa_chinensis	RchiOBHm_Chr1g0362561
rosa_laevigata	RLG00000027639
rosa_multiflora	Rmu_sc0005725.1_g000006
rosa_roxburghii	Rroxscaffold_4G00293970
rosa_rugosa	Rorug01G0299000 Rorug01G0299100 Rorug01G0299200 Rorug01G0299300 Rorug01G0299300 Rorug01G0299400
rosa_samantha	Rh1AG308200 Rh1BG271200 Rh1CG289100 Rh1DG301600
rosa_wichuraiana	Rw1G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 975
AarI	CACCTGC	2 cut(s)	797, 1679
AatII	GACGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	2588
Acc36I	ACCTGC	6 cut(s)	217, 481, 797, 1196, 1679, 2503
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	1042
AccI	GTMKAC	2 cut(s)	821, 2177
AccII	CGCG	2 cut(s)	407, 537
AclWI	GGATC	3 cut(s)	1244, 1327, 2162
AcoI	YGGCCR	3 cut(s)	390, 1591, 2013
AcsI	RAATTY	4 cut(s)	17, 1186, 1625, 2126
AcuI	CTGAAG	4 cut(s)	1733, 1822, 2264, 2427
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	7 cut(s)	228, 895, 1383, 1816, 1853, 2361, 2527
AfiI	CCNNNNNNNGG	2 cut(s)	1042, 1621
AflII	CTTAAG	1 cut(s)	1757
AgeI	ACCGGT	1 cut(s)	991
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	4 cut(s)	749, 1285, 1401, 2542
AjuI	GAANNNNNNNTTGG	2 cut(s)	2546, 2578
AleI	CACNNNNGTG	1 cut(s)	2394
Alw21I	GWGCWC	3 cut(s)	1433, 2038, 2352
Alw26I	GTCTC	4 cut(s)	951, 1101, 2607, 2680
Alw44I	GTGCAC	1 cut(s)	1429
AlwI	GGATC	3 cut(s)	1244, 1327, 2162
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	2 cut(s)	1740, 2031
AoxI	GGCC	7 cut(s)	197, 344, 390, 1591, 2013, 2438, 2695
ApaLI	GTGCAC	1 cut(s)	1429
ApoI	RAATTY	4 cut(s)	17, 1186, 1625, 2126
AseI	ATTAAT	2 cut(s)	648, 2595
AsiGI	ACCGGT	1 cut(s)	991
Asp718I	GGTACC	1 cut(s)	226
AspLEI	GCGC	3 cut(s)	409, 537, 2589
AspS9I	GGNCC	7 cut(s)	172, 344, 1240, 1270, 1461, 1664, 2438
AsuC2I	CCSGG	2 cut(s)	1741, 1742
AsuHPI	GGTGA	7 cut(s)	194, 1427, 1703, 1949, 2206, 2381, 2381
AsuII	TTCGAA	1 cut(s)	2621
AvaI	CYCGRG	2 cut(s)	1740, 2031
AvaII	GGWCC	5 cut(s)	172, 1240, 1270, 1461, 1664
BaeGI	GKGCMC	3 cut(s)	968, 1433, 1574
BalI	TGGCCA	1 cut(s)	2015
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	5 cut(s)	696, 1800, 1995, 2038, 2352
BarI	GAAGNNNNNNTAC	2 cut(s)	2482, 2514
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	3 cut(s)	1433, 2038, 2352
BbvCI	CCTCAGC	2 cut(s)	1152, 1488
BccI	CCATC	8 cut(s)	1044, 1472, 1496, 1602, 1808, 1815, 1910, 2071
BceAI	ACGGC	3 cut(s)	259, 405, 1599
BciT130I	CCWGG	4 cut(s)	751, 1287, 1403, 2544
BclI	TGATCA	2 cut(s)	372, 2242
BcnI	CCSGG	2 cut(s)	1741, 1742
BcoDI	GTCTC	4 cut(s)	951, 1101, 2607, 2680
BfaI	CTAG	3 cut(s)	324, 846, 2331
BfrI	CTTAAG	1 cut(s)	1757
BfuAI	ACCTGC	6 cut(s)	217, 481, 797, 1196, 1679, 2503
BglI	GCCNNNNNGGC	1 cut(s)	1940
BglII	AGATCT	1 cut(s)	1576
Bme1390I	CCNGG	6 cut(s)	751, 1287, 1403, 1741, 1742, 2544
Bme18I	GGWCC	5 cut(s)	172, 1240, 1270, 1461, 1664
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	1740, 2031
BmgT120I	GGNCC	7 cut(s)	172, 344, 1240, 1270, 1461, 1664, 2438
BmrFI	CCNGG	6 cut(s)	751, 1287, 1403, 1741, 1742, 2544
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	4 cut(s)	750, 1186, 1720, 1883
BmuI	ACTGGG	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	4 cut(s)	143, 1061, 1152, 1488
Bpu14I	TTCGAA	1 cut(s)	2621
BpuEI	CTTGAG	1 cut(s)	2366
BpuMI	CCSGG	2 cut(s)	1741, 1742
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	387, 393, 1740, 1843, 2210
BsaWI	WCCGGW	1 cut(s)	991
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 2416, 2446
Bsc4I	CCNNNNNNNGG	2 cut(s)	1042, 1621
Bse118I	RCCGGY	2 cut(s)	991, 1934
Bse1I	ACTGG	2 cut(s)	696, 895
Bse3DI	GCAATG	3 cut(s)	522, 1273, 1551
BseBI	CCWGG	4 cut(s)	751, 1287, 1403, 2544
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	5 cut(s)	387, 393, 1740, 1843, 2210
BseGI	GGATG	2 cut(s)	1735, 1800
BseLI	CCNNNNNNNGG	2 cut(s)	1042, 1621
BseMI	GCAATG	3 cut(s)	522, 1273, 1551
BseMII	CTCAG	7 cut(s)	1143, 1470, 1502, 2008, 2030, 2466, 2700
BseNI	ACTGG	2 cut(s)	696, 895
BseRI	GAGGAG	2 cut(s)	458, 1169
BseSI	GKGCMC	3 cut(s)	968, 1433, 1574
BseX3I	CGGCCG	1 cut(s)	390
BseYI	CCCAGC	2 cut(s)	416, 725
BsgI	GTGCAG	3 cut(s)	825, 1328, 1683
Bsh1236I	CGCG	2 cut(s)	407, 537
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	7 cut(s)	199, 346, 392, 1593, 2015, 2440, 2697
BshNI	GGYRCC	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	991
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	3 cut(s)	1433, 2038, 2352
BsiHKCI	CYCGRG	2 cut(s)	1740, 2031
BsiSI	CCGG	5 cut(s)	347, 686, 992, 1741, 1935
BslFI	GGGAC	5 cut(s)	53, 158, 1253, 1283, 1775
BslI	CCNNNNNNNGG	2 cut(s)	1042, 1621
BsmAI	GTCTC	4 cut(s)	951, 1101, 2607, 2680
BsmBI	CGTCTC	1 cut(s)	2607
BsmFI	GGGAC	5 cut(s)	53, 158, 1253, 1283, 1775
BsmI	GAATGC	3 cut(s)	1144, 1153, 2077
BsnI	GGCC	7 cut(s)	199, 346, 392, 1593, 2015, 2440, 2697
BsoBI	CYCGRG	2 cut(s)	1740, 2031
Bsp119I	TTCGAA	1 cut(s)	2621
Bsp1286I	GDGCHC	8 cut(s)	696, 968, 1433, 1574, 1800, 1995, 2038, 2352
Bsp143I	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
BspANI	GGCC	7 cut(s)	199, 346, 392, 1593, 2015, 2440, 2697
BspCNI	CTCAG	7 cut(s)	1144, 1471, 1501, 2007, 2031, 2467, 2701
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	407, 537
BspHI	TCATGA	2 cut(s)	1000, 2224
BspMI	ACCTGC	6 cut(s)	217, 481, 797, 1196, 1679, 2503
BspPI	GGATC	3 cut(s)	1244, 1327, 2162
BspT104I	TTCGAA	1 cut(s)	2621
BspT107I	GGYRCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	1757
BsrDI	GCAATG	3 cut(s)	522, 1273, 1551
BsrFI	RCCGGY	2 cut(s)	991, 1934
BsrI	ACTGG	2 cut(s)	696, 895
BssAI	RCCGGY	2 cut(s)	991, 1934
BssECI	CCNNGG	5 cut(s)	387, 393, 1740, 1843, 2210
BssMI	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
BssNAI	GTATAC	1 cut(s)	822
BssNI	GRCGYC	1 cut(s)	215
Bst1107I	GTATAC	1 cut(s)	822
Bst2UI	CCWGG	4 cut(s)	751, 1287, 1403, 2544
Bst6I	CTCTTC	3 cut(s)	68, 1448, 2213
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	1757
BstAPI	GCANNNNNTGC	2 cut(s)	760, 1655
BstBI	TTCGAA	1 cut(s)	2621
BstC8I	GCNNGC	8 cut(s)	197, 732, 804, 1230, 1311, 1677, 1718, 2340
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	1735, 1800
BstFNI	CGCG	2 cut(s)	407, 537
BstHHI	GCGC	3 cut(s)	409, 537, 2589
BstKTI	GATC	9 cut(s)	366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
BstMAI	GTCTC	4 cut(s)	951, 1101, 2607, 2680
BstMBI	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
BstMCI	CGRYCG	1 cut(s)	393
BstNI	CCWGG	4 cut(s)	751, 1287, 1403, 2544
BstNSI	RCATGY	2 cut(s)	1130, 1720
BstSCI	CCNGG	6 cut(s)	749, 1285, 1401, 1739, 1740, 2542
BstSLI	GKGCMC	3 cut(s)	968, 1433, 1574
BstUI	CGCG	2 cut(s)	407, 537
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	1576
BstYI	RGATCY	1 cut(s)	1576
BstZ17I	GTATAC	1 cut(s)	822
BstZI	CGGCCG	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	7 cut(s)	199, 346, 392, 1593, 2015, 2440, 2697
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	1735, 1800
BtsIMutI	CAGTG	2 cut(s)	1431, 2668
BveI	ACCTGC	6 cut(s)	217, 481, 797, 1196, 1679, 2503
Cac8I	GCNNGC	8 cut(s)	197, 732, 804, 1230, 1311, 1677, 1718, 2340
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	2 cut(s)	1000, 2224
CfoI	GCGC	3 cut(s)	409, 537, 2589
Cfr10I	RCCGGY	2 cut(s)	991, 1934
Cfr13I	GGNCC	7 cut(s)	172, 344, 1240, 1270, 1461, 1664, 2438
Cfr9I	CCCGGG	1 cut(s)	1740
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	2589
CsiI	ACCWGGT	1 cut(s)	1285
Csp6I	GTAC	7 cut(s)	227, 894, 1382, 1815, 1852, 2360, 2526
CspAI	ACCGGT	1 cut(s)	991
CviAII	CATG	8 cut(s)	599, 638, 1001, 1127, 1559, 1717, 2225, 2312
CviQI	GTAC	7 cut(s)	227, 894, 1382, 1815, 1852, 2360, 2526
DpnI	GATC	9 cut(s)	365, 374, 404, 999, 1251, 1334, 1578, 2169, 2244
DpnII	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
DraI	TTTAAA	1 cut(s)	775
DriI	GACNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	3 cut(s)	390, 1591, 2013
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	68, 1448, 2213
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	3 cut(s)	68, 1448, 2213
EciI	GGCGGA	2 cut(s)	704, 881
Ecl136II	GAGCTC	2 cut(s)	2036, 2350
EclXI	CGGCCG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	5 cut(s)	696, 1800, 1995, 2038, 2352
Eco32I	GATATC	2 cut(s)	1894, 1958
Eco47I	GGWCC	5 cut(s)	172, 1240, 1270, 1461, 1664
Eco52I	CGGCCG	1 cut(s)	390
Eco53kI	GAGCTC	2 cut(s)	2036, 2350
Eco57I	CTGAAG	4 cut(s)	1733, 1822, 2264, 2427
Eco88I	CYCGRG	2 cut(s)	1740, 2031
EcoICRI	GAGCTC	2 cut(s)	2036, 2350
EcoO109I	RGGNCCY	1 cut(s)	2438
EcoRI	GAATTC	2 cut(s)	17, 1625
EcoRII	CCWGG	4 cut(s)	749, 1285, 1401, 2542
EcoRV	GATATC	2 cut(s)	1894, 1958
EcoT38I	GRGCYC	5 cut(s)	696, 1800, 1995, 2038, 2352
Esp3I	CGTCTC	1 cut(s)	2607
FaeI	CATG	8 cut(s)	602, 641, 1004, 1130, 1562, 1720, 2228, 2315
FaqI	GGGAC	5 cut(s)	53, 158, 1253, 1283, 1775
FatI	CATG	8 cut(s)	598, 637, 1000, 1126, 1558, 1716, 2224, 2311
FauI	CCCGC	1 cut(s)	807
FauNDI	CATATG	1 cut(s)	1255
FbaI	TGATCA	2 cut(s)	372, 2242
FblI	GTMKAC	2 cut(s)	821, 2177
FokI	GGATG	2 cut(s)	1742, 1787
FriOI	GRGCYC	5 cut(s)	696, 1800, 1995, 2038, 2352
FspBI	CTAG	3 cut(s)	324, 846, 2331
FspI	TGCGCA	1 cut(s)	2588
GlaI	GCGC	3 cut(s)	408, 536, 2588
GsaI	CCCAGC	2 cut(s)	420, 729
HaeIII	GGCC	7 cut(s)	199, 346, 392, 1593, 2015, 2440, 2697
HapII	CCGG	5 cut(s)	347, 686, 992, 1741, 1935
HgaI	GACGC	1 cut(s)	2589
HhaI	GCGC	3 cut(s)	409, 537, 2589
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	8 cut(s)	602, 641, 1004, 1130, 1562, 1720, 2228, 2315
Hin6I	GCGC	3 cut(s)	407, 535, 2587
HinP1I	GCGC	3 cut(s)	407, 535, 2587
HincII	GTYRAC	2 cut(s)	577, 2178
HindII	GTYRAC	2 cut(s)	577, 2178
HindIII	AAGCTT	4 cut(s)	1496, 2048, 2402, 2414
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	5 cut(s)	347, 686, 992, 1741, 1935
HphI	GGTGA	7 cut(s)	194, 1427, 1703, 1949, 2206, 2381, 2381
Hpy188III	TCNNGA	8 cut(s)	175, 1001, 1478, 1580, 1878, 2225, 2235, 2345
Hpy99I	CGWCG	5 cut(s)	29, 217, 220, 362, 1620
HpyAV	CCTTC	6 cut(s)	1009, 1293, 1846, 2102, 2451, 2565
HpyCH4IV	ACGT	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	8 cut(s)	602, 641, 1004, 1130, 1562, 1720, 2228, 2315
HspAI	GCGC	3 cut(s)	407, 535, 2587
KpnI	GGTACC	1 cut(s)	230
Ksp22I	TGATCA	2 cut(s)	372, 2242
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
LmnI	GCTCC	4 cut(s)	121, 691, 1976, 2355
LweI	GCATC	4 cut(s)	750, 1186, 1720, 1883
MabI	ACCWGGT	1 cut(s)	1285
MaeI	CTAG	3 cut(s)	324, 846, 2331
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	9 cut(s)	257, 556, 778, 1373, 1735, 1829, 2194, 2262, 2283
MalI	GATC	9 cut(s)	365, 374, 404, 999, 1251, 1334, 1578, 2169, 2244
MboI	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
MfeI	CAATTG	2 cut(s)	550, 929
MflI	RGATCY	1 cut(s)	1576
MhlI	GDGCHC	8 cut(s)	696, 968, 1433, 1574, 1800, 1995, 2038, 2352
MlsI	TGGCCA	1 cut(s)	2015
MluNI	TGGCCA	1 cut(s)	2015
MlyI	GAGTC	4 cut(s)	130, 392, 605, 2230
MmeI	TCCRAC	3 cut(s)	381, 1891, 2703
Mox20I	TGGCCA	1 cut(s)	2015
MscI	TGGCCA	1 cut(s)	2015
MslI	CAYNNNNRTG	3 cut(s)	597, 2082, 2394
Msp20I	TGGCCA	1 cut(s)	2015
MspA1I	CMGCKG	3 cut(s)	428, 863, 2447
MspCI	CTTAAG	1 cut(s)	1757
MspI	CCGG	5 cut(s)	347, 686, 992, 1741, 1935
MspR9I	CCNGG	6 cut(s)	751, 1287, 1403, 1741, 1742, 2544
MunI	CAATTG	2 cut(s)	550, 929
Mva1269I	GAATGC	3 cut(s)	1144, 1153, 2077
MvaI	CCWGG	4 cut(s)	751, 1287, 1403, 2544
MvnI	CGCG	2 cut(s)	407, 537
NciI	CCSGG	2 cut(s)	1741, 1742
NdeI	CATATG	1 cut(s)	1255
NdeII	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
NlaIII	CATG	8 cut(s)	602, 641, 1004, 1130, 1562, 1720, 2228, 2315
NmeAIII	GCCGAG	3 cut(s)	392, 418, 729
NmuCI	GTSAC	7 cut(s)	556, 778, 1373, 1735, 1829, 2194, 2283
NsbI	TGCGCA	1 cut(s)	2588
NspI	RCATGY	2 cut(s)	1130, 1720
NspV	TTCGAA	1 cut(s)	2621
OliI	CACNNNNGTG	1 cut(s)	2394
PaeI	GCATGC	1 cut(s)	1720
PaeR7I	CTCGAG	1 cut(s)	2031
PagI	TCATGA	2 cut(s)	1000, 2224
PaqCI	CACCTGC	2 cut(s)	797, 1679
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 63, 395
PctI	GAATGC	3 cut(s)	1144, 1153, 2077
PflMI	CCANNNNNTGG	1 cut(s)	1042
PinAI	ACCGGT	1 cut(s)	991
PleI	GAGTC	4 cut(s)	129, 391, 605, 2229
PpsI	GAGTC	4 cut(s)	129, 391, 605, 2229
PshBI	ATTAAT	2 cut(s)	648, 2595
PsiI	TTATAA	2 cut(s)	621, 975
Psp124BI	GAGCTC	2 cut(s)	2038, 2352
Psp6I	CCWGG	4 cut(s)	749, 1285, 1401, 2542
PspFI	CCCAGC	2 cut(s)	416, 725
PspGI	CCWGG	4 cut(s)	749, 1285, 1401, 2542
PspPI	GGNCC	7 cut(s)	172, 344, 1240, 1270, 1461, 1664, 2438
PspXI	VCTCGAGB	1 cut(s)	2031
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	1 cut(s)	1576
PvuII	CAGCTG	1 cut(s)	2447
RsaI	GTAC	7 cut(s)	228, 895, 1383, 1816, 1853, 2361, 2527
RsaNI	GTAC	7 cut(s)	227, 894, 1382, 1815, 1852, 2360, 2526
RseI	CAYNNNNRTG	3 cut(s)	597, 2082, 2394
SacI	GAGCTC	2 cut(s)	2038, 2352
SalI	GTCGAC	1 cut(s)	2176
Sau3AI	GATC	9 cut(s)	363, 372, 402, 997, 1249, 1332, 1576, 2167, 2242
Sau96I	GGNCC	7 cut(s)	172, 344, 1240, 1270, 1461, 1664, 2438
SchI	GAGTC	4 cut(s)	130, 392, 605, 2230
ScrFI	CCNGG	6 cut(s)	751, 1287, 1403, 1741, 1742, 2544
SduI	GDGCHC	8 cut(s)	696, 968, 1433, 1574, 1800, 1995, 2038, 2352
SexAI	ACCWGGT	1 cut(s)	1285
SfaNI	GCATC	4 cut(s)	750, 1186, 1720, 1883
Sfr274I	CTCGAG	1 cut(s)	2031
SfuI	TTCGAA	1 cut(s)	2621
SinI	GGWCC	5 cut(s)	172, 1240, 1270, 1461, 1664
SlaI	CTCGAG	1 cut(s)	2031
SmaI	CCCGGG	1 cut(s)	1742
SmiMI	CAYNNNNRTG	3 cut(s)	597, 2082, 2394
SmlI	CTYRAG	3 cut(s)	1757, 2031, 2345
SmoI	CTYRAG	3 cut(s)	1757, 2031, 2345
SphI	GCATGC	1 cut(s)	1720
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	3 cut(s)	324, 846, 2331
SstI	GAGCTC	2 cut(s)	2038, 2352
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	6 cut(s)	749, 1285, 1401, 1739, 1740, 2542
TaiI	ACGT	1 cut(s)	218
TauI	GCSGC	1 cut(s)	866
TscAI	CASTG	2 cut(s)	1438, 2668
TseFI	GTSAC	7 cut(s)	556, 778, 1373, 1735, 1829, 2194, 2283
Tsp45I	GTSAC	7 cut(s)	556, 778, 1373, 1735, 1829, 2194, 2283
TspDTI	ATGAA	7 cut(s)	17, 153, 935, 1028, 1175, 1785, 2300
TspGWI	ACGGA	2 cut(s)	1742, 1989
TspMI	CCCGGG	1 cut(s)	1740
TspRI	CASTG	2 cut(s)	1438, 2668
Van91I	CCANNNNNTGG	1 cut(s)	1042
Vha464I	CTTAAG	1 cut(s)	1757
VneI	GTGCAC	1 cut(s)	1429
VpaK11BI	GGWCC	5 cut(s)	172, 1240, 1270, 1461, 1664
VspI	ATTAAT	2 cut(s)	648, 2595
XapI	RAATTY	4 cut(s)	17, 1186, 1625, 2126
XceI	RCATGY	2 cut(s)	1130, 1720
XhoI	CTCGAG	1 cut(s)	2031
XmaI	CCCGGG	1 cut(s)	1740
XmiI	GTMKAC	2 cut(s)	821, 2177
XspI	CTAG	3 cut(s)	324, 846, 2331
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.