Rh1CG289100

Lysine-specific histone demethylase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005668
Physical Location & Seq
Reverse (-)
56185835 .. 56189361
3527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG289100.1

Sequence Viewer

Length: 2727 bp
ATGAATCCCCCAAACGAATTCCCCGACGATTTTTCGTCTTTCCCTCCTATTCCATTCGCCCTCTTCGTCCCCCCTGAAAACCCTAACCCTAACCCGAATCCTAATTCAACCGCAGCTCCGAGTCCGACCTCAATCGAAGACCCTAGCTCCGCTCATCTACTCTCATTCACGGTCCCGAAGAAGCGGAGGCGAGGCAGGCCTCACCGACCTGCGACGTCGTTTCAGGTACCTCAATTACTCAACGGCGGTTTCAATAGTAACTCCCTTGCTTCTTCTTCTTCTGGCCCAATTTCAGCTCATCCGATTAGACACAATGCGGAAAACCCTAGTTCTTCTGCAAAGGCCGGGCCGGATATGTCCGACGAGATCATTGTGATCAATAAGGAGTCCACGGCCGAGGCGTTGATCGCGCTCTCGGCTGGGTTTCCAGCCGATTCTCTCACAGAGGAGGAAATCGATTTCGGGGTTATTCGGGTTATTGGGGGAATAGAGCAGGTCAATTATATTCTCATTCGGAACCATATCATTGCAAAATGGCGCGAAAATGTGTCCAATTGGGTCACAAAGGATATTTTTGCTAACTCTATACCCAAGCATTGTCATGCTCTTTTAGACTCTACTTATAACTATCTGGTTTCACATGGATATATTAATTTTGGGATTGCACCGGCCATTAAAGAGAAGATTCCCGCGGAGCCTAGTAAGCCGAGTGTGATTATCATTGGTGCTGGGCTTGCTGGTCTTGCTGCTGCTAGGCAAATGATGCGTTTTGGGTTTAAAGTGACTGTTTTGGAGGGTAGGAAGCGTGCAGGTGGGCGGGTGTACACTAAGAAAATGGAGGGAGGAATTAGGGCATGTCAAGCAGCGGCGGATTTAGGGGGTAGTGTTTTGACTGGTACATTAGGGAACCCACTTGGCATTGTTGCTCGCCAATTGGGCTACTCGCTTCATAAGATTAGAGACAAGTGCCCACTTTATAATGTGGAGGGGAAACCGGTAGATCATGATATGGATATGAAGGTGGAAAGTGTTTTTAATCATCTTTTAGATAAGGCAAGTAGGCTTAGGCAGTTAATGGGTGGGGTTTCGGTTGATGTGTCTCTTGGTTCGGCATTGGAAACATTCTGGCATGTTTCTGGGAATGCTGTGAATGCTGAGGAGATGAACTTGTTCAATTGGCATCTTGCGAATTTGGAATACGCAAATGCAGGTTTACTGTCGAAACTTTCGCTTGCATTTTGGGACCAAGATGATCCATATGATATGGGAGGGGACCATTGCTTCTTACCTGGTGGTAATGGAAGGCTGGTGCAGGCTTTGGCAGAGAATGTGCCGATCCTATATGAGAAAACTGTTCACACCATAAGGTATGGTAGTGACGGGGTACAGATTCTTGCTGGAAGCCAGGCTTTTGAGGGTGATATGGTTTTGTGCACTGTTCCGCTTGGTGTTCTGAAGAGTGGGTCCATCAAGTTTATTCCTGAGTTGCCTCAGCGAAAGCTTGATGGAATTAAGAGGTTGGGTTTTGGTTTGTTGAATAAGGTTGCAATGCTTTTTCCTCATGTGTTTTGGGGCACAGATCTTGATACATTCGGCCATCTGTCTGATGATTCAAGCCGTCGAGGGGAATTCTTCCTGTTTTACAGCTATGCAACAGTTGCTGGTGGTCCTCTCTTGCTTGCTTTAGTAGCAGGTGAAGCTGCGCATAAGTTTGAGAGCATGCCCCCTACGGATGCTGTGACCCGGGTTCTTCAGATTCTTAAGGGTATTTATGAACCACAAGGAATTAGTGTCCCAGAGCCCATCCAAACAGTCTGTACCAGATGGGGAAGTGACCCCTTCAGCCTCGGTTCTTACTCTAATGTTGCAGTTGGGGCATCAGGAGATGATTATGATATCTTAGCAGAAAGTGTTGGAGATGGGCGACTTTTCTTTGCCGGTGAGGCTACCAATAGGAGATATCCTGCAACTATGCACGGAGCTTTCCTTAGTGGGCTCAGAGAAGCTGCAAATATGGCCAACTATGCTAATGCTCGAGCTCTGAGGATAAAGCTTAACAGGAACCCATCAAAGAATGCCCATTCTTGTGCTTCCCTTCTTGCAGATTTATTCAGAGAGCCTGATTTAGAATTTGGGAGTTTTTCTGTTATTTTTGGTCGAAGAAATGCTGATCCCAAGTCAACAGCAATTTTAAGGGTGACATTTAATGACCCTCGGAAGAAGAGTCATGACGGTTCAAGACCTGATCAACAGCACTCAAATAAGTTACTTTTTCAGCAGCTTCAGTCACATTTTAATCAGCAGCAGCAGCTTCATGTTTACACTTTGTTATCTAGGCAGCAGGCTCTTGAGCTCCGAGAAGTACGAGGTGGTGATGAGATGAGGTTGAATTACCTCTGTGAAAAGCTTGGAGTGAAGCTTGTGGGGAGAAAGGGTTTGGGGCCTTCAGCTGATTCTGTAATTGCCTTAATAAAAGCTGAGAGGGGCAATCGTAAACCTGCTTCAACTTTATCATCTTTTAAGTCTGGTACATCGAAGCTGAAACCTGGCACTTTGAAACGAAAATTGGTCAGAAGGGCTAAAATATTGCGCAGCATTAATGCGTCTCCCCTTTCTGCTAATTCAAACTTGGCTAGTAAACTCCCAGAGGAAAATAAGAACAGTGTTCAAGTAGTCTCCAACACACTCGGTTCAGGCCAAAACGATTCTGAGGTGTTGAAGCAATGA

Protein Analysis

908

Amino Acids

98.76

Weight (kDa)

9.04

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 145 - 219 3.9e-14 SWIRM domain
Pyr_redox_2 PF07992 237 - 282 7e-06 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8 PF13450 240 - 299 5.3e-10 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 245 - 672 1.5e-83 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 624, 978
AarI CACCTGC 2 cut(s) 800, 1682
AatII GACGTC 1 cut(s) 218
Acc16I TGCGCA 2 cut(s) 1704, 2591
Acc36I ACCTGC 6 cut(s) 217, 484, 800, 1199, 1682, 2506
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 3 cut(s) 410, 540, 692
AclWI GGATC 3 cut(s) 1247, 1330, 2165
AcoI YGGCCR 4 cut(s) 393, 669, 1594, 2016
AcsI RAATTY 4 cut(s) 17, 1189, 1628, 2129
AcuI CTGAAG 5 cut(s) 1475, 1736, 1825, 2267, 2430
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 7 cut(s) 228, 824, 898, 1386, 1819, 2364, 2530
AfiI CCNNNNNNNGG 1 cut(s) 1624
AflII CTTAAG 1 cut(s) 1760
AgeI ACCGGT 1 cut(s) 994
AjnI CCWGG 3 cut(s) 1288, 1404, 2545
AjuI GAANNNNNNNTTGG 2 cut(s) 2549, 2581
Alw21I GWGCWC 3 cut(s) 1436, 2041, 2355
Alw26I GTCTC 4 cut(s) 954, 1104, 2610, 2680
Alw44I GTGCAC 1 cut(s) 1432
AlwI GGATC 3 cut(s) 1247, 1330, 2165
AlwNI CAGNNNCTG 1 cut(s) 1661
Ama87I CYCGRG 2 cut(s) 1743, 2034
ApaLI GTGCAC 1 cut(s) 1432
ApoI RAATTY 4 cut(s) 17, 1189, 1628, 2129
AseI ATTAAT 2 cut(s) 651, 2598
AsiGI ACCGGT 1 cut(s) 994
Asp700I GAANNNNTTC 1 cut(s) 1169
Asp718I GGTACC 1 cut(s) 226
AspLEI GCGC 4 cut(s) 412, 540, 1705, 2592
AspS9I GGNCC 8 cut(s) 172, 284, 347, 1243, 1273, 1464, 1667, 2441
AsuC2I CCSGG 3 cut(s) 346, 1744, 1745
AsuHPI GGTGA 6 cut(s) 194, 1430, 1706, 1952, 2209, 2384
AvaI CYCGRG 2 cut(s) 1743, 2034
AvaII GGWCC 5 cut(s) 172, 1243, 1273, 1464, 1667
BaeGI GKGCMC 3 cut(s) 971, 1436, 1577
BalI TGGCCA 1 cut(s) 2018
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 4 cut(s) 1803, 1998, 2041, 2355
BarI GAAGNNNNNNTAC 2 cut(s) 2485, 2517
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 3 cut(s) 1436, 2041, 2355
BbvCI CCTCAGC 2 cut(s) 1155, 1491
BccI CCATC 7 cut(s) 1475, 1499, 1605, 1811, 1818, 1913, 2074
BceAI ACGGC 3 cut(s) 259, 408, 1602
BciT130I CCWGG 3 cut(s) 1290, 1406, 2547
BclI TGATCA 2 cut(s) 375, 2245
BcnI CCSGG 3 cut(s) 346, 1744, 1745
BcoDI GTCTC 4 cut(s) 954, 1104, 2610, 2680
BfaI CTAG 6 cut(s) 144, 327, 699, 753, 2334, 2634
BfrI CTTAAG 1 cut(s) 1760
BfuAI ACCTGC 6 cut(s) 217, 484, 800, 1199, 1682, 2506
BglI GCCNNNNNGGC 2 cut(s) 936, 1943
BglII AGATCT 1 cut(s) 1579
Bme1390I CCNGG 6 cut(s) 346, 1290, 1406, 1744, 1745, 2547
Bme18I GGWCC 5 cut(s) 172, 1243, 1273, 1464, 1667
BmeT110I CYCGRG 2 cut(s) 1743, 2034
BmgT120I GGNCC 8 cut(s) 172, 284, 347, 1243, 1273, 1464, 1667, 2441
BmrFI CCNGG 6 cut(s) 346, 1290, 1406, 1744, 1745, 2547
BmsI GCATC 4 cut(s) 753, 1189, 1723, 1886
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 3 cut(s) 1064, 1155, 1491
BpuEI CTTGAG 1 cut(s) 2369
BpuMI CCSGG 3 cut(s) 346, 1744, 1745
Bsa29I ATCGAT 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 390, 396, 690, 1743, 1846, 2213
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 6 cut(s) 100, 130, 131, 161, 2419, 2449
Bsc4I CCNNNNNNNGG 1 cut(s) 1624
Bse118I RCCGGY 3 cut(s) 667, 994, 1937
Bse1I ACTGG 1 cut(s) 898
Bse3DI GCAATG 3 cut(s) 525, 1276, 1554
BseBI CCWGG 3 cut(s) 1290, 1406, 2547
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 6 cut(s) 390, 396, 690, 1743, 1846, 2213
BseGI GGATG 3 cut(s) 298, 1738, 1803
BseLI CCNNNNNNNGG 1 cut(s) 1624
BseMI GCAATG 3 cut(s) 525, 1276, 1554
BseMII CTCAG 7 cut(s) 1146, 1473, 1505, 2011, 2033, 2469, 2700
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 2 cut(s) 461, 1172
BseSI GKGCMC 3 cut(s) 971, 1436, 1577
BseX3I CGGCCG 1 cut(s) 393
BseYI CCCAGC 2 cut(s) 419, 728
BsgI GTGCAG 2 cut(s) 828, 1331
Bsh1236I CGCG 3 cut(s) 410, 540, 692
Bsh1285I CGRYCG 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 226
BshTI ACCGGT 1 cut(s) 994
BshVI ATCGAT 1 cut(s) 456
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 3 cut(s) 1436, 2041, 2355
BsiHKCI CYCGRG 2 cut(s) 1743, 2034
BsiSI CCGG 6 cut(s) 345, 350, 668, 995, 1744, 1938
BslFI GGGAC 5 cut(s) 53, 158, 1256, 1286, 1778
BslI CCNNNNNNNGG 1 cut(s) 1624
BsmAI GTCTC 4 cut(s) 954, 1104, 2610, 2680
BsmBI CGTCTC 1 cut(s) 2610
BsmFI GGGAC 5 cut(s) 53, 158, 1256, 1286, 1778
BsmI GAATGC 3 cut(s) 1147, 1156, 2080
BsoBI CYCGRG 2 cut(s) 1743, 2034
Bsp1286I GDGCHC 7 cut(s) 971, 1436, 1577, 1803, 1998, 2041, 2355
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
BspCNI CTCAG 7 cut(s) 1147, 1474, 1504, 2010, 2034, 2470, 2701
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 3 cut(s) 410, 540, 692
BspHI TCATGA 2 cut(s) 1003, 2227
BspMI ACCTGC 6 cut(s) 217, 484, 800, 1199, 1682, 2506
BspPI GGATC 3 cut(s) 1247, 1330, 2165
BspT107I GGYRCC 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 1760
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 3 cut(s) 525, 1276, 1554
BsrFI RCCGGY 3 cut(s) 667, 994, 1937
BsrGI TGTACA 1 cut(s) 822
BsrI ACTGG 1 cut(s) 898
BssAI RCCGGY 3 cut(s) 667, 994, 1937
BssECI CCNNGG 6 cut(s) 390, 396, 690, 1743, 1846, 2213
BssMI GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
BssNI GRCGYC 1 cut(s) 215
Bst2UI CCWGG 3 cut(s) 1290, 1406, 2547
Bst4CI ACNGT 9 cut(s) 172, 787, 1218, 1354, 1438, 1657, 1813, 2234, 2663
Bst6I CTCTTC 3 cut(s) 68, 1451, 2216
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 1760
BstAPI GCANNNNNTGC 2 cut(s) 763, 1658
BstAUI TGTACA 1 cut(s) 822
BstC8I GCNNGC 9 cut(s) 197, 735, 807, 928, 1233, 1314, 1680, 1721, 2343
BstDSI CCRYGG 2 cut(s) 390, 690
BstF5I GGATG 3 cut(s) 298, 1738, 1803
BstFNI CGCG 3 cut(s) 410, 540, 692
BstHHI GCGC 4 cut(s) 412, 540, 1705, 2592
BstKTI GATC 9 cut(s) 369, 378, 408, 1003, 1255, 1338, 1582, 2173, 2248
BstMAI GTCTC 4 cut(s) 954, 1104, 2610, 2680
BstMBI GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
BstMCI CGRYCG 1 cut(s) 396
BstNI CCWGG 3 cut(s) 1290, 1406, 2547
BstNSI RCATGY 3 cut(s) 858, 1133, 1723
BstSCI CCNGG 6 cut(s) 344, 1288, 1404, 1742, 1743, 2545
BstSLI GKGCMC 3 cut(s) 971, 1436, 1577
BstUI CGCG 3 cut(s) 410, 540, 692
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 1579
BstYI RGATCY 1 cut(s) 1579
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 2 cut(s) 390, 690
BtsCI GGATG 3 cut(s) 298, 1738, 1803
BtsIMutI CAGTG 2 cut(s) 1434, 2668
BveI ACCTGC 6 cut(s) 217, 484, 800, 1199, 1682, 2506
Cac8I GCNNGC 9 cut(s) 197, 735, 807, 928, 1233, 1314, 1680, 1721, 2343
CaiI CAGNNNCTG 1 cut(s) 1661
CciI TCATGA 2 cut(s) 1003, 2227
CfoI GCGC 4 cut(s) 412, 540, 1705, 2592
Cfr10I RCCGGY 3 cut(s) 667, 994, 1937
Cfr13I GGNCC 8 cut(s) 172, 284, 347, 1243, 1273, 1464, 1667, 2441
Cfr42I CCGCGG 1 cut(s) 693
Cfr9I CCCGGG 1 cut(s) 1743
ClaI ATCGAT 1 cut(s) 456
CseI GACGC 1 cut(s) 2592
CsiI ACCWGGT 1 cut(s) 1288
Csp6I GTAC 7 cut(s) 227, 823, 897, 1385, 1818, 2363, 2529
CspAI ACCGGT 1 cut(s) 994
CviAII CATG 9 cut(s) 602, 641, 855, 1004, 1130, 1562, 1720, 2228, 2315
CviQI GTAC 7 cut(s) 227, 823, 897, 1385, 1818, 2363, 2529
DpnI GATC 9 cut(s) 368, 377, 407, 1002, 1254, 1337, 1581, 2172, 2247
DpnII GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 4 cut(s) 393, 669, 1594, 2016
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 68, 1451, 2216
EarI CTCTTC 3 cut(s) 68, 1451, 2216
EciI GGCGGA 1 cut(s) 884
Ecl136II GAGCTC 2 cut(s) 2039, 2353
EclXI CGGCCG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 4 cut(s) 1803, 1998, 2041, 2355
Eco32I GATATC 2 cut(s) 1897, 1961
Eco47I GGWCC 5 cut(s) 172, 1243, 1273, 1464, 1667
Eco52I CGGCCG 1 cut(s) 393
Eco53kI GAGCTC 2 cut(s) 2039, 2353
Eco57I CTGAAG 5 cut(s) 1475, 1736, 1825, 2267, 2430
Eco88I CYCGRG 2 cut(s) 1743, 2034
EcoICRI GAGCTC 2 cut(s) 2039, 2353
EcoO109I RGGNCCY 1 cut(s) 2441
EcoRI GAATTC 2 cut(s) 17, 1628
EcoRII CCWGG 3 cut(s) 1288, 1404, 2545
EcoRV GATATC 2 cut(s) 1897, 1961
EcoT38I GRGCYC 4 cut(s) 1803, 1998, 2041, 2355
Esp3I CGTCTC 1 cut(s) 2610
FaeI CATG 9 cut(s) 605, 644, 858, 1007, 1133, 1565, 1723, 2231, 2318
FalI AAGNNNNNCTT 2 cut(s) 1393, 1425
FaqI GGGAC 5 cut(s) 53, 158, 1256, 1286, 1778
FatI CATG 9 cut(s) 601, 640, 854, 1003, 1129, 1561, 1719, 2227, 2314
FauI CCCGC 2 cut(s) 697, 810
FauNDI CATATG 1 cut(s) 1258
FbaI TGATCA 2 cut(s) 375, 2245
FokI GGATG 3 cut(s) 285, 1745, 1790
FriOI GRGCYC 4 cut(s) 1803, 1998, 2041, 2355
FspBI CTAG 6 cut(s) 144, 327, 699, 753, 2334, 2634
FspI TGCGCA 2 cut(s) 1704, 2591
GlaI GCGC 4 cut(s) 411, 539, 1704, 2591
GsaI CCCAGC 2 cut(s) 423, 732
HapII CCGG 6 cut(s) 345, 350, 668, 995, 1744, 1938
HgaI GACGC 1 cut(s) 2592
HhaI GCGC 4 cut(s) 412, 540, 1705, 2592
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 9 cut(s) 605, 644, 858, 1007, 1133, 1565, 1723, 2231, 2318
Hin6I GCGC 4 cut(s) 410, 538, 1703, 2590
HinP1I GCGC 4 cut(s) 410, 538, 1703, 2590
HincII GTYRAC 1 cut(s) 2181
HindII GTYRAC 1 cut(s) 2181
HindIII AAGCTT 4 cut(s) 1499, 2051, 2405, 2417
HpaII CCGG 6 cut(s) 345, 350, 668, 995, 1744, 1938
HphI GGTGA 6 cut(s) 194, 1430, 1706, 1952, 2209, 2384
Hpy188III TCNNGA 8 cut(s) 175, 1004, 1481, 1583, 1881, 2228, 2238, 2348
Hpy99I CGWCG 5 cut(s) 29, 217, 220, 365, 1623
HpyAV CCTTC 6 cut(s) 1012, 1296, 1849, 2105, 2454, 2568
HpyCH4III ACNGT 9 cut(s) 172, 787, 1218, 1354, 1438, 1657, 1813, 2234, 2663
HpyCH4IV ACGT 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 9 cut(s) 605, 644, 858, 1007, 1133, 1565, 1723, 2231, 2318
HspAI GCGC 4 cut(s) 410, 538, 1703, 2590
KpnI GGTACC 1 cut(s) 230
Ksp22I TGATCA 2 cut(s) 375, 2245
KspI CCGCGG 1 cut(s) 693
Kzo9I GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
LmnI GCTCC 5 cut(s) 121, 152, 694, 1979, 2358
LweI GCATC 4 cut(s) 753, 1189, 1723, 1886
MabI ACCWGGT 1 cut(s) 1288
MaeI CTAG 6 cut(s) 144, 327, 699, 753, 2334, 2634
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 9 cut(s) 257, 559, 781, 1376, 1738, 1832, 2197, 2265, 2286
MalI GATC 9 cut(s) 368, 377, 407, 1002, 1254, 1337, 1581, 2172, 2247
MbiI CCGCTC 1 cut(s) 152
MboI GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
MfeI CAATTG 3 cut(s) 553, 932, 1174
MflI RGATCY 1 cut(s) 1579
MhlI GDGCHC 7 cut(s) 971, 1436, 1577, 1803, 1998, 2041, 2355
MlsI TGGCCA 1 cut(s) 2018
MluNI TGGCCA 1 cut(s) 2018
MlyI GAGTC 4 cut(s) 130, 395, 608, 2233
MmeI TCCRAC 4 cut(s) 149, 384, 1894, 2703
Mox20I TGGCCA 1 cut(s) 2018
MroXI GAANNNNTTC 1 cut(s) 1169
MscI TGGCCA 1 cut(s) 2018
MslI CAYNNNNRTG 2 cut(s) 600, 2085
Msp20I TGGCCA 1 cut(s) 2018
MspA1I CMGCKG 3 cut(s) 692, 866, 2450
MspCI CTTAAG 1 cut(s) 1760
MspI CCGG 6 cut(s) 345, 350, 668, 995, 1744, 1938
MspR9I CCNGG 6 cut(s) 346, 1290, 1406, 1744, 1745, 2547
MunI CAATTG 3 cut(s) 553, 932, 1174
Mva1269I GAATGC 3 cut(s) 1147, 1156, 2080
MvaI CCWGG 3 cut(s) 1290, 1406, 2547
MvnI CGCG 3 cut(s) 410, 540, 692
NciI CCSGG 3 cut(s) 346, 1744, 1745
NdeI CATATG 1 cut(s) 1258
NdeII GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
NlaIII CATG 9 cut(s) 605, 644, 858, 1007, 1133, 1565, 1723, 2231, 2318
NmeAIII GCCGAG 3 cut(s) 395, 421, 732
NmuCI GTSAC 7 cut(s) 559, 781, 1376, 1738, 1832, 2197, 2286
NsbI TGCGCA 2 cut(s) 1704, 2591
NspI RCATGY 3 cut(s) 858, 1133, 1723
PaeI GCATGC 1 cut(s) 1723
PaeR7I CTCGAG 1 cut(s) 2034
PagI TCATGA 2 cut(s) 1003, 2227
PaqCI CACCTGC 2 cut(s) 800, 1682
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 63, 398
PctI GAATGC 3 cut(s) 1147, 1156, 2080
PdmI GAANNNNTTC 1 cut(s) 1169
PfeI GAWTC 9 cut(s) 4, 97, 434, 685, 1390, 1610, 1756, 2453, 2705
PinAI ACCGGT 1 cut(s) 994
PleI GAGTC 4 cut(s) 129, 394, 608, 2232
PpsI GAGTC 4 cut(s) 129, 394, 608, 2232
PshBI ATTAAT 2 cut(s) 651, 2598
PsiI TTATAA 2 cut(s) 624, 978
Psp124BI GAGCTC 2 cut(s) 2041, 2355
Psp6I CCWGG 3 cut(s) 1288, 1404, 2545
PspFI CCCAGC 2 cut(s) 419, 728
PspGI CCWGG 3 cut(s) 1288, 1404, 2545
PspPI GGNCC 8 cut(s) 172, 284, 347, 1243, 1273, 1464, 1667, 2441
PspXI VCTCGAGB 1 cut(s) 2034
PstNI CAGNNNCTG 1 cut(s) 1661
PsuI RGATCY 1 cut(s) 1579
PvuII CAGCTG 1 cut(s) 2450
RsaI GTAC 7 cut(s) 228, 824, 898, 1386, 1819, 2364, 2530
RsaNI GTAC 7 cut(s) 227, 823, 897, 1385, 1818, 2363, 2529
RseI CAYNNNNRTG 2 cut(s) 600, 2085
SacI GAGCTC 2 cut(s) 2041, 2355
SacII CCGCGG 1 cut(s) 693
Sau3AI GATC 9 cut(s) 366, 375, 405, 1000, 1252, 1335, 1579, 2170, 2245
Sau96I GGNCC 8 cut(s) 172, 284, 347, 1243, 1273, 1464, 1667, 2441
SchI GAGTC 4 cut(s) 130, 395, 608, 2233
ScrFI CCNGG 6 cut(s) 346, 1290, 1406, 1744, 1745, 2547
SduI GDGCHC 7 cut(s) 971, 1436, 1577, 1803, 1998, 2041, 2355
SexAI ACCWGGT 1 cut(s) 1288
SfaNI GCATC 4 cut(s) 753, 1189, 1723, 1886
Sfr274I CTCGAG 1 cut(s) 2034
Sfr303I CCGCGG 1 cut(s) 693
SgrBI CCGCGG 1 cut(s) 693
SinI GGWCC 5 cut(s) 172, 1243, 1273, 1464, 1667
SlaI CTCGAG 1 cut(s) 2034
SmaI CCCGGG 1 cut(s) 1745
SmiMI CAYNNNNRTG 2 cut(s) 600, 2085
SmlI CTYRAG 3 cut(s) 1760, 2034, 2348
SmoI CTYRAG 3 cut(s) 1760, 2034, 2348
SphI GCATGC 1 cut(s) 1723
SseBI AGGCCT 1 cut(s) 199
SspI AATATT 1 cut(s) 2586
SspMI CTAG 6 cut(s) 144, 327, 699, 753, 2334, 2634
SstI GAGCTC 2 cut(s) 2041, 2355
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 344, 1288, 1404, 1742, 1743, 2545
TaaI ACNGT 9 cut(s) 172, 787, 1218, 1354, 1438, 1657, 1813, 2234, 2663
TaiI ACGT 1 cut(s) 218
TaqI TCGA 7 cut(s) 135, 456, 1220, 1621, 2035, 2158, 2534
TatI WGTACW 1 cut(s) 822
TauI GCSGC 1 cut(s) 869
TfiI GAWTC 9 cut(s) 4, 97, 434, 685, 1390, 1610, 1756, 2453, 2705
TscAI CASTG 2 cut(s) 1441, 2668
TseFI GTSAC 7 cut(s) 559, 781, 1376, 1738, 1832, 2197, 2286
Tsp45I GTSAC 7 cut(s) 559, 781, 1376, 1738, 1832, 2197, 2286
TspDTI ATGAA 6 cut(s) 17, 938, 1031, 1178, 1788, 2303
TspGWI ACGGA 2 cut(s) 1745, 1992
TspMI CCCGGG 1 cut(s) 1743
TspRI CASTG 2 cut(s) 1441, 2668
Vha464I CTTAAG 1 cut(s) 1760
VneI GTGCAC 1 cut(s) 1432
VpaK11BI GGWCC 5 cut(s) 172, 1243, 1273, 1464, 1667
VspI ATTAAT 2 cut(s) 651, 2598
XapI RAATTY 4 cut(s) 17, 1189, 1628, 2129
XceI RCATGY 3 cut(s) 858, 1133, 1723
XhoI CTCGAG 1 cut(s) 2034
XmaI CCCGGG 1 cut(s) 1743
XmnI GAANNNNTTC 1 cut(s) 1169
XspI CTAG 6 cut(s) 144, 327, 699, 753, 2334, 2634
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.