Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005668

Physical Location & Seq

Genomic Coordinates Forward (+)

41577478 .. 41579535

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTTATGTGTCTGTAGTCAATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTGATCAATATAGTCGCATTCTTCTACGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGACAGAGGTGAACTACATGGAGAAACTTTCGAAAGAGGAGGGGATTCAGAAGAAACTCAGCAAGGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGCGGAACATAGGCACAATTGGATCTCTGCAGATTTAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

135

Amino Acids

16.28

Weight (kDa)

5.94

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	1 - 102	6.8e-47	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10390 AT3G10390 AT3G10390 AT3G10390
fragaria_vesca	FvH4_7g18750 FvH4_7g18750 FvH4_7g18750 FvH4_7g18750
malus_domestica	MD01G1103000.v1.1
prunus_persica	Prupe.2G208600_v2.0.a1 Prupe.2G208600_v2.0.a1
pyrus_communis	pycom01g12950 pycom07g16350
rosa_chinensis	RchiOBHm_Chr1g0362561
rosa_laevigata	RLG00000027639
rosa_multiflora	Rmu_sc0005725.1_g000006
rosa_roxburghii	Rroxscaffold_4G00293970
rosa_rugosa	Rorug01G0299000 Rorug01G0299100 Rorug01G0299200 Rorug01G0299300 Rorug01G0299300 Rorug01G0299400
rosa_samantha	Rh1AG308200 Rh1BG271200 Rh1CG289100 Rh1DG301600
rosa_wichuraiana	Rw1G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	365
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	47, 187, 230
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	2 cut(s)	214, 290
AvaII	GGWCC	1 cut(s)	166
BccI	CCATC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	133
BfmI	CTRYAG	2 cut(s)	75, 390
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
Bpu14I	TTCGAA	2 cut(s)	214, 290
BsaJI	CCNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	118, 166
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	147
Bsp119I	TTCGAA	2 cut(s)	214, 290
Bsp143I	GATC	3 cut(s)	55, 133, 384
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	1 cut(s)	392
BspT104I	TTCGAA	2 cut(s)	214, 290
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	55, 133, 384
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	198
BstBI	TTCGAA	2 cut(s)	214, 290
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	118, 166
BstKTI	GATC	3 cut(s)	58, 136, 387
BstMBI	GATC	3 cut(s)	55, 133, 384
BstSFI	CTRYAG	2 cut(s)	75, 390
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	118, 166
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	2 cut(s)	226, 344
CviKI_1	RGCY	2 cut(s)	226, 344
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	57, 135, 386
DpnII	GATC	3 cut(s)	55, 133, 384
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	280
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	133
FokI	GGATG	2 cut(s)	105, 173
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	178, 271
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	122, 355
Hpy8I	GTNNAC	2 cut(s)	178, 271
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	334, 392
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	55, 133, 384
LpnPI	CCDG	2 cut(s)	135, 255
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	57, 135, 386
MboI	GATC	3 cut(s)	55, 133, 384
MboII	GAAGA	2 cut(s)	143, 322
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	3 cut(s)	41, 181, 379
MnlI	CCTC	5 cut(s)	157, 201, 259, 289, 292
MslI	CAYNNNNRTG	2 cut(s)	15, 68
MspI	CCGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	147
NdeII	GATC	3 cut(s)	55, 133, 384
NlaIII	CATG	1 cut(s)	280
NspV	TTCGAA	2 cut(s)	214, 290
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	15, 68
Sau3AI	GATC	3 cut(s)	55, 133, 384
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	4 cut(s)	27, 171, 270, 346
SfcI	CTRYAG	2 cut(s)	75, 390
SfuI	TTCGAA	2 cut(s)	214, 290
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	15, 68
Sse9I	AATT	3 cut(s)	41, 181, 379
SsiI	CCGC	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	214, 290
TasI	AATT	3 cut(s)	41, 181, 379
TfiI	GAWTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.