Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Forward (+)

30817149 .. 30821016

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1214800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGTCAGAGAGAGCGCGGCGAATAAGATGGTGGAGTTGGAGCGAGCGCAGAATCCATGGATGAGCACGGAGCAAACGCAATCGGTTGGGGCGGATTTCTCTGCCGCGCAGCCCCCCAGCACGTCGCACTGGCAATTGGGGGTCGCCGAGCGAGCTTTCTCGGCGGCGGGGGCCGCATTTTTATCGGCGATTATTGTTAATCCGCTTGATGTTGTAAAGACGAGGTTGCAAGCTCAGGCAGCTGGGGTTCCTTACTCGCATCCGCTAAGTAATGTCATTAGTCGGATGTCATATTTCGGGCCAAGCATGATGTTTGCGGATCTAAGGTGTTCGCCATCATGCACACGTGCTGGAATTCAAGGCACTGTTTCAATATGCCCTCCAGATTGCTTTCAGTACAAAGGCACATTGGATGTCTTCTACAAAATCATTAGACAGGAAGGATTTTCAAGGCTATGGCGAGGCACAAATGCAGGGTTAGCCCTTGCTGTTCCAACAGTGGGAATTTACCTACCATGCTATGATGTGTTTCGCAACCAATTAGAGGAATTCACTGCTCGTAATGCACCAAGCACAACAGCTTATGTCCCGCTAGTTGCCGGCTCTTTGGCACGCTCGTTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTCAAAGTGATACAAAATGGCGGGAAGCCTCCTGGTGTTTTGAAGACTTTATTTGGTGTCATCTCTCATGTCAAGACCACAAGTAATGTGCAGAGCAACTTGCAAGGTTATTGTGTCCTGTGGACGGGTATGGGAGCACAACTTGCTCGTGATGTTCCCTTCTCAGGAATCTGTTGGGCAACCCTTGAGCCACTCAGGAGAAAACTTCTTGGTCTGGTGGGTGATGAAGCCAGCGCACTCAATATCCTTGGGGCAAATTTTTCCGCTGCTTTTGTTGCAGGAAGCCTTGCTGCTGCAGCTACATGTCCGTTGGATGTTGCAAAAACCCGAAGGCAGATAGAGAACGATCCAATCAGGGCAATGAAAATGACGACGCGGCAAACACTTCTGGAGATTTGGAGGGGTGGAGGTCTGAAGGGATTGTTCACAGGAGTTGGCCCTCGTGTTGCCCGCGCAGGCCCTTCTGTTGGGATTGTGGTTTCCTTCTATGAAGTTGTGAAGTACGTTCTCCATCAGCGGTACGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

402

Amino Acids

43.2

Weight (kDa)

9.52

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	47 - 87	2.6e-06	Mitochondrial carrier protein
Mito_carr	PF00153	134 - 181	4.7e-09	Mitochondrial carrier protein
Mito_carr	PF00153	194 - 293	2.7e-10	Mitochondrial carrier protein
Mito_carr	PF00153	308 - 396	3.9e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	17, 107, 1048, 1125
AclWI	GGATC	2 cut(s)	327, 1013
AcsI	RAATTY	4 cut(s)	354, 504, 548, 928
AcuI	CTGAAG	1 cut(s)	1106
AcvI	CACGTG	1 cut(s)	347
AfaI	GTAC	3 cut(s)	398, 1175, 1193
AfiI	CCNNNNNNNGG	5 cut(s)	500, 544, 796, 836, 1139
AflIII	ACRYGT	2 cut(s)	344, 974
AgsI	TTSAA	6 cut(s)	359, 372, 450, 647, 676, 715
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	7 cut(s)	155, 233, 242, 581, 623, 971, 1199
AluI	AGCT	7 cut(s)	155, 233, 242, 581, 623, 971, 1199
Alw21I	GWGCWC	2 cut(s)	68, 811
AlwI	GGATC	2 cut(s)	327, 1013
AoxI	GGCC	4 cut(s)	171, 299, 1108, 1129
ApeKI	GCWGC	7 cut(s)	109, 239, 938, 962, 965, 968, 1196
ApoI	RAATTY	4 cut(s)	354, 504, 548, 928
AspLEI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
AspS9I	GGNCC	4 cut(s)	171, 299, 1109, 1130
AsuHPI	GGTGA	1 cut(s)	905
BauI	CACGAG	2 cut(s)	819, 1113
BbrPI	CACGTG	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	409, 722
Bbv12I	GWGCWC	2 cut(s)	68, 811
BbvI	GCAGC	6 cut(s)	121, 251, 925, 949, 952, 980
BccI	CCATC	3 cut(s)	22, 343, 1191
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	1 cut(s)	705
BfaI	CTAG	2 cut(s)	593, 654
BfmI	CTRYAG	1 cut(s)	966
Bme1390I	CCNGG	1 cut(s)	705
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	4 cut(s)	171, 299, 1109, 1130
BmiI	GGNNCC	2 cut(s)	172, 249
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	2 cut(s)	409, 722
BpmI	CTGGAG	2 cut(s)	366, 1082
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	878
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	56, 919
Bsc4I	CCNNNNNNNGG	5 cut(s)	500, 544, 796, 836, 1139
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	56, 919
BseGI	GGATG	5 cut(s)	66, 259, 291, 418, 991
BseLI	CCNNNNNNNGG	5 cut(s)	500, 544, 796, 836, 1139
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	3 cut(s)	248, 849, 880
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	6 cut(s)	121, 251, 925, 949, 952, 980
BseYI	CCCAGC	2 cut(s)	116, 242
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	4 cut(s)	17, 107, 1048, 1125
BshFI	GGCC	4 cut(s)	173, 301, 1110, 1131
BsiHKAI	GWGCWC	2 cut(s)	68, 811
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	5 cut(s)	500, 544, 796, 836, 1139
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	173, 301, 1110, 1131
Bsp1286I	GDGCHC	2 cut(s)	68, 811
Bsp143I	GATC	2 cut(s)	319, 1018
Bsp19I	CCATGG	1 cut(s)	56
BspANI	GGCC	4 cut(s)	173, 301, 1110, 1131
BspCNI	CTCAG	3 cut(s)	247, 848, 879
BspFNI	CGCG	4 cut(s)	17, 107, 1048, 1125
BspHI	TCATGA	1 cut(s)	1202
BspLI	GGNNCC	2 cut(s)	172, 249
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	2 cut(s)	327, 1013
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	56, 919
BssMI	GATC	2 cut(s)	319, 1018
BssSI	CACGAG	2 cut(s)	819, 1113
BssT1I	CCWWGG	2 cut(s)	56, 919
Bst2BI	CACGAG	2 cut(s)	819, 1113
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	367, 499
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	234, 266, 323, 835, 866
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	5 cut(s)	66, 259, 291, 418, 991
BstFNI	CGCG	4 cut(s)	17, 107, 1048, 1125
BstHHI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
BstKTI	GATC	2 cut(s)	322, 1021
BstMBI	GATC	2 cut(s)	319, 1018
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	2 cut(s)	667, 978
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	966
BstUI	CGCG	4 cut(s)	17, 107, 1048, 1125
BstV1I	GCAGC	6 cut(s)	121, 251, 925, 949, 952, 980
BstV2I	GAAGAC	2 cut(s)	409, 722
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	173, 301, 1110, 1131
BtgI	CCRYGG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	5 cut(s)	66, 259, 291, 418, 991
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	4 cut(s)	127, 363, 504, 552
CciI	TCATGA	1 cut(s)	1202
CfoI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	4 cut(s)	171, 299, 1109, 1130
CseI	GACGC	1 cut(s)	1054
Csp6I	GTAC	3 cut(s)	397, 1174, 1192
CviAII	CATG	8 cut(s)	57, 307, 339, 516, 664, 740, 975, 1203
CviQI	GTAC	3 cut(s)	397, 1174, 1192
DdeI	CTNAG	5 cut(s)	234, 266, 323, 835, 866
DpnI	GATC	2 cut(s)	321, 1020
DpnII	GATC	2 cut(s)	319, 1018
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	56, 919
Eco57I	CTGAAG	1 cut(s)	1106
Eco72I	CACGTG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	1130
EcoRI	GAATTC	2 cut(s)	354, 548
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	56, 919
ErhI	CCWWGG	2 cut(s)	56, 919
FaeI	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	8 cut(s)	56, 306, 338, 515, 663, 739, 974, 1202
FauI	CCCGC	4 cut(s)	160, 597, 686, 1130
FokI	GGATG	5 cut(s)	73, 246, 298, 425, 998
FspBI	CTAG	2 cut(s)	593, 654
GlaI	GCGC	5 cut(s)	16, 48, 108, 907, 1126
GsaI	CCCAGC	2 cut(s)	120, 246
GsuI	CTGGAG	2 cut(s)	366, 1082
HaeIII	GGCC	4 cut(s)	173, 301, 1110, 1131
HapII	CCGG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	1054
HhaI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
Hin1II	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
Hin6I	GCGC	5 cut(s)	15, 47, 107, 906, 1125
HinP1I	GCGC	5 cut(s)	15, 47, 107, 906, 1125
HinfI	GANTC	2 cut(s)	52, 840
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	2 cut(s)	795, 1098
Hpy188I	TCNGA	3 cut(s)	8, 285, 1086
Hpy188III	TCNNGA	7 cut(s)	383, 745, 821, 837, 868, 1061, 1203
Hpy8I	GTNNAC	2 cut(s)	795, 1098
Hpy99I	CGWCG	2 cut(s)	127, 1048
HpyAV	CCTTC	6 cut(s)	434, 841, 996, 1081, 1143, 1165
HpyCH4III	ACNGT	2 cut(s)	367, 499
HpyCH4IV	ACGT	3 cut(s)	122, 346, 1176
HpyF3I	CTNAG	5 cut(s)	234, 266, 323, 835, 866
HpySE526I	ACGT	3 cut(s)	122, 346, 1176
Hsp92II	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
HspAI	GCGC	5 cut(s)	15, 47, 107, 906, 1125
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	319, 1018
LmnI	GCTCC	3 cut(s)	40, 70, 806
Lsp1109I	GCAGC	6 cut(s)	121, 251, 925, 949, 952, 980
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	593, 654
MaeII	ACGT	3 cut(s)	122, 346, 1176
MalI	GATC	2 cut(s)	321, 1020
MboI	GATC	2 cut(s)	319, 1018
MboII	GAAGA	2 cut(s)	409, 727
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	68, 811
MluCI	AATT	6 cut(s)	134, 354, 504, 539, 548, 928
MmeI	TCCRAC	4 cut(s)	18, 263, 518, 963
MnlI	CCTC	8 cut(s)	216, 390, 455, 538, 711, 1065, 1073, 1122
MroNI	GCCGGC	1 cut(s)	599
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	3 cut(s)	242, 938, 1189
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	705
MunI	CAATTG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	4 cut(s)	17, 107, 1048, 1125
NaeI	GCCGGC	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	319, 1018
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
NlaIV	GGNNCC	2 cut(s)	172, 249
NmeAIII	GCCGAG	2 cut(s)	140, 172
NspI	RCATGY	2 cut(s)	667, 978
PaeI	GCATGC	1 cut(s)	667
PagI	TCATGA	1 cut(s)	1202
PciI	ACATGT	1 cut(s)	974
PctI	GAATGC	1 cut(s)	671
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	52, 840
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
PscI	ACATGT	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	703
PspCI	CACGTG	1 cut(s)	347
PspFI	CCCAGC	2 cut(s)	116, 242
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	172, 249
PspPI	GGNCC	4 cut(s)	171, 299, 1109, 1130
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	398, 1175, 1193
RsaNI	GTAC	3 cut(s)	397, 1174, 1192
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	319, 1018
Sau96I	GGNCC	4 cut(s)	171, 299, 1109, 1130
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	2 cut(s)	68, 811
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	6 cut(s)	134, 354, 504, 539, 548, 928
SspMI	CTAG	2 cut(s)	593, 654
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	56, 919
TaaI	ACNGT	2 cut(s)	367, 499
TaiI	ACGT	3 cut(s)	125, 349, 1179
TasI	AATT	6 cut(s)	134, 354, 504, 539, 548, 928
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	5 cut(s)	20, 107, 167, 176, 1051
TfiI	GAWTC	2 cut(s)	52, 840
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	4 cut(s)	134, 370, 504, 559
TseI	GCWGC	7 cut(s)	109, 239, 938, 962, 965, 968, 1196
TspDTI	ATGAA	4 cut(s)	912, 1049, 1176, 1191
TspGWI	ACGGA	2 cut(s)	83, 969
TspRI	CASTG	4 cut(s)	134, 370, 504, 559
XapI	RAATTY	4 cut(s)	354, 504, 548, 928
XceI	RCATGY	2 cut(s)	667, 978
XspI	CTAG	2 cut(s)	593, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.