Rh1CG410500

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
67396783 .. 67400738
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG410500.1

Sequence Viewer

Length: 963 bp
ATGGTGGAGTTGGAGAGGGCGCAGAATCCTTGGGTGAGTAGTAGTGACGAGCAGCAAATCGACCGAGTTGAAATCGACGGTAGAGATTTGTCCATCATGCCGGAGCTGTCGGTTTTGGATAGAGGCGACGCCGGATTCGCTAAGCGACCGGACGGCGAAAGGTGTAAAACGACGTCGGATTGGAAGCTAGGGGTTGCGGAGAGAGCTTTCTCGGCCGCCGGCGCCGCGTTTTTGTCTGCCATTATTGTTAATCCACTTGATGTGGCCAAGACGAGGTTGCAAGCTCAGGCAGCTGGTGTGCCTTACTCGCATCCGCTAAGTAATATCACGAGTCGCATGGCTTTTTTCGGCCCTACCATGCTGTTTGCGGATCTAAGGTGTTCACCATCGTGCACACGTGCTGGAATTCATGGTACTGTATCAATATGCCCACCAGATTGTTTTCAGTACAAAGGCACACTGGATGTTTTCTACAAAATCATTCGACAGGAAGGGTTTGCAAGGTTATGGAGAGGCACAAATGCAGGATTGGCACTGGCTATTCCAACAGTGGGAATCTATCTACCATGCTATGACATATTTCGCAACTGGTTAGAAGAATTCACTGCCCGTAATGCTCCCAGCACGAGTGTATATGTTCCTTTAGTTGCTGGCTCTTTGGCACGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTTAAAGTGATACAAAATAGTGCAAAGCCTCCTGGTGTTTTGAGGACTCTATTGGACGTTGTCTCTCATGTCAAGACCACAAGTAATGCTGAAAGCAACTTAAGAGGCTATCGTGTCCTCTGGACCGGCATGGGAGCACAACTTGCTCGTGATGTTCCCTACTCTGCAATCTGTTGGTCGACTCTCGAGCCAGTAAGGATTGACTCTTCTGATTGTTTTGACTGCATGGATGTTACTTGA

Protein Analysis

320

Amino Acids

35.12

Weight (kDa)

7.47

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 64 - 103 1e-05 Mitochondrial carrier protein
Mito_carr PF00153 151 - 199 1e-09 Mitochondrial carrier protein
Mito_carr PF00153 210 - 305 1.6e-11 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 227
AciI CCGC 5 cut(s) 197, 216, 225, 314, 368
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 2 cut(s) 213, 264
AcsI RAATTY 2 cut(s) 405, 599
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 3 cut(s) 129, 173, 222
AfaI GTAC 2 cut(s) 415, 449
AfiI CCNNNNNNNGG 2 cut(s) 273, 551
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 71, 698
AjnI CCWGG 1 cut(s) 754
AleI CACNNNNGTG 1 cut(s) 388
AluBI AGCT 6 cut(s) 106, 187, 206, 284, 293, 674
AluI AGCT 6 cut(s) 106, 187, 206, 284, 293, 674
Alw21I GWGCWC 2 cut(s) 395, 862
Alw26I GTCTC 1 cut(s) 790
Alw44I GTGCAC 1 cut(s) 391
AlwI GGATC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 3 cut(s) 213, 264, 349
ApaLI GTGCAC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 52, 290
ApoI RAATTY 2 cut(s) 405, 599
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 2 cut(s) 22, 224
AspS9I GGNCC 2 cut(s) 350, 846
AsuHPI GGTGA 2 cut(s) 46, 375
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 221
BauI CACGAG 3 cut(s) 328, 625, 870
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 2 cut(s) 395, 862
BbvI GCAGC 2 cut(s) 64, 302
BccI CCATC 2 cut(s) 101, 394
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 790
BfaI CTAG 2 cut(s) 188, 705
BfoI RGCGCY 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 823
BisI GCNGC 4 cut(s) 53, 216, 225, 291
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 4 cut(s) 54, 217, 226, 292
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 1 cut(s) 846
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 2 cut(s) 350, 846
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 398
BsaHI GRCGYC 3 cut(s) 129, 173, 222
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 551
Bse118I RCCGGY 2 cut(s) 218, 848
Bse1I ACTGG 4 cut(s) 465, 540, 593, 914
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 310, 469, 958
BseLI CCNNNNNNNGG 2 cut(s) 273, 551
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 4 cut(s) 465, 540, 593, 914
BseSI GKGCMC 1 cut(s) 395
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 64, 302
BseYI CCCAGC 1 cut(s) 620
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 3 cut(s) 64, 149, 216
BshFI GGCC 3 cut(s) 215, 266, 351
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 3 cut(s) 64, 149, 216
BsiHKAI GWGCWC 2 cut(s) 395, 862
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 5 cut(s) 101, 132, 149, 219, 849
BslI CCNNNNNNNGG 2 cut(s) 273, 551
BsmAI GTCTC 1 cut(s) 790
BsnI GGCC 3 cut(s) 215, 266, 351
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 395, 862
Bsp143I GATC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 5 cut(s) 197, 216, 225, 314, 368
BspANI GGCC 3 cut(s) 215, 266, 351
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 823
BsrFI RCCGGY 2 cut(s) 218, 848
BsrI ACTGG 4 cut(s) 465, 540, 593, 914
BssAI RCCGGY 2 cut(s) 218, 848
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 3 cut(s) 129, 173, 222
BssSI CACGAG 3 cut(s) 328, 625, 870
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 3 cut(s) 328, 625, 870
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 80, 418, 550
Bst6I CTCTTC 1 cut(s) 934
BstACI GRCGYC 3 cut(s) 129, 173, 222
BstAFI CTTAAG 1 cut(s) 823
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 6 cut(s) 220, 282, 652, 664, 716, 720
BstDEI CTNAG 4 cut(s) 141, 285, 317, 374
BstF5I GGATG 3 cut(s) 310, 469, 958
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 22, 224
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 790
BstMBI GATC 1 cut(s) 370
BstMCI CGRYCG 3 cut(s) 64, 149, 216
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 64, 302
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 215, 266, 351
BtsCI GGATG 3 cut(s) 310, 469, 958
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 4 cut(s) 458, 533, 555, 603
Cac8I GCNNGC 6 cut(s) 220, 282, 652, 664, 716, 720
CfoI GCGC 2 cut(s) 22, 224
Cfr10I RCCGGY 2 cut(s) 218, 848
Cfr13I GGNCC 2 cut(s) 350, 846
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 414, 448
CviAII CATG 9 cut(s) 97, 337, 358, 410, 567, 715, 791, 853, 949
CviQI GTAC 2 cut(s) 414, 448
DdeI CTNAG 4 cut(s) 141, 285, 317, 374
DinI GGCGCC 1 cut(s) 223
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 2 cut(s) 213, 264
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 934
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 846
Eco52I CGGCCG 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 908
EcoRI GAATTC 2 cut(s) 405, 599
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 9 cut(s) 100, 340, 361, 413, 570, 718, 794, 856, 952
FatI CATG 9 cut(s) 96, 336, 357, 409, 566, 714, 790, 852, 948
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 4 cut(s) 53, 216, 225, 291
FokI GGATG 2 cut(s) 297, 476
Fsp4HI GCNGC 4 cut(s) 53, 216, 225, 291
FspBI CTAG 2 cut(s) 188, 705
GlaI GCGC 2 cut(s) 21, 223
GluI GCNGC 4 cut(s) 53, 216, 225, 291
GsaI CCCAGC 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 215, 266, 351
HapII CCGG 5 cut(s) 101, 132, 149, 219, 849
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 22, 224
Hin1I GRCGYC 3 cut(s) 129, 173, 222
Hin1II CATG 9 cut(s) 100, 340, 361, 413, 570, 718, 794, 856, 952
Hin6I GCGC 2 cut(s) 20, 222
HinP1I GCGC 2 cut(s) 20, 222
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 7 cut(s) 25, 135, 331, 555, 769, 904, 926
HpaII CCGG 5 cut(s) 101, 132, 149, 219, 849
HphI GGTGA 2 cut(s) 46, 375
Hpy166II GTNNAC 3 cut(s) 383, 393, 903
Hpy188I TCNGA 2 cut(s) 178, 934
Hpy188III TCNNGA 5 cut(s) 328, 796, 844, 872, 908
Hpy8I GTNNAC 3 cut(s) 383, 393, 903
Hpy99I CGWCG 4 cut(s) 80, 131, 175, 178
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 3 cut(s) 80, 418, 550
HpyCH4IV ACGT 3 cut(s) 173, 397, 780
HpyCH4V TGCA 9 cut(s) 280, 393, 500, 524, 680, 718, 746, 890, 948
HpyF3I CTNAG 4 cut(s) 141, 285, 317, 374
HpySE526I ACGT 3 cut(s) 173, 397, 780
Hsp92I GRCGYC 3 cut(s) 129, 173, 222
Hsp92II CATG 9 cut(s) 100, 340, 361, 413, 570, 718, 794, 856, 952
HspAI GCGC 2 cut(s) 20, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 3 cut(s) 103, 622, 857
Lsp1109I GCAGC 2 cut(s) 64, 302
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 188, 705
MaeII ACGT 3 cut(s) 173, 397, 780
MaeIII GTNAC 2 cut(s) 44, 955
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 2 cut(s) 608, 921
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 395, 862
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 2 cut(s) 405, 599
MluNI TGGCCA 1 cut(s) 266
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 4 cut(s) 340, 763, 898, 920
MmeI TCCRAC 2 cut(s) 156, 569
MnlI CCTC 8 cut(s) 9, 116, 267, 506, 759, 762, 821, 851
Mox20I TGGCCA 1 cut(s) 266
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MscI TGGCCA 1 cut(s) 266
MseI TTAA 3 cut(s) 249, 726, 824
MslI CAYNNNNRTG 1 cut(s) 388
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 5 cut(s) 101, 132, 149, 219, 849
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 222
NdeII GATC 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 9 cut(s) 100, 340, 361, 413, 570, 718, 794, 856, 952
NlaIV GGNNCC 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 718
OliI CACNNNNGTG 1 cut(s) 388
PaeI GCATGC 1 cut(s) 718
PaeR7I CTCGAG 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 25, 135, 555
PflFI GACNNNGTC 1 cut(s) 782
PkrI GCNGC 4 cut(s) 54, 217, 226, 292
PleI GAGTC 4 cut(s) 339, 763, 898, 920
PluTI GGCGCC 1 cut(s) 225
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 4 cut(s) 339, 763, 898, 920
Ppu21I YACGTR 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 754
PspCI CACGTG 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 350, 846
PsuI RGATCY 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 415, 449
RsaNI GTAC 2 cut(s) 414, 448
RseI CAYNNNNRTG 1 cut(s) 388
SalI GTCGAC 1 cut(s) 901
SaqAI TTAA 3 cut(s) 249, 726, 824
SatI GCNGC 4 cut(s) 53, 216, 225, 291
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 2 cut(s) 350, 846
SchI GAGTC 4 cut(s) 340, 763, 898, 920
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 2 cut(s) 395, 862
SfaNI GCATC 1 cut(s) 319
SfoI GGCGCC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 908
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 846
SlaI CTCGAG 1 cut(s) 908
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 823, 908
SmoI CTYRAG 2 cut(s) 823, 908
SphI GCATGC 1 cut(s) 718
Sse9I AATT 2 cut(s) 405, 599
SsiI CCGC 5 cut(s) 197, 216, 225, 314, 368
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 188, 705
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 80, 418, 550
TaiI ACGT 3 cut(s) 176, 400, 783
TaqI TCGA 5 cut(s) 60, 75, 484, 902, 909
TaqII GACCGA 1 cut(s) 78
TasI AATT 2 cut(s) 405, 599
TatI WGTACW 1 cut(s) 447
TauI GCSGC 2 cut(s) 218, 227
TfiI GAWTC 3 cut(s) 25, 135, 555
Tru1I TTAA 3 cut(s) 249, 726, 824
Tru9I TTAA 3 cut(s) 249, 726, 824
TscAI CASTG 4 cut(s) 465, 540, 555, 610
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 52, 290
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 4 cut(s) 465, 540, 555, 610
Tth111I GACNNNGTC 1 cut(s) 782
Vha464I CTTAAG 1 cut(s) 823
VneI GTGCAC 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 846
XapI RAATTY 2 cut(s) 405, 599
XceI RCATGY 1 cut(s) 718
XhoI CTCGAG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 2 cut(s) 188, 705
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.