Rw1G038390

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
65953867 .. 65957991
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038390.1

Sequence Viewer

Length: 1242 bp
ATGGTGGAGTTGGAGAGGGCGCAGAATCCTTGGGTGAGTAGTAGTGACGAGCAGCAAATCGACGGTAGAGATTTGTCCATCATGCCGGAGCTGTCGGTTTTGGACAGAGGCGACGCCGGATTCGCTAAGCGACCAGACGGCGAGAGGTGTAAAACGACGTCGGATTGGAAGCTAGGGGTTGCGGAGAGAGCTTTCTCGGCCGCCGGCGCCGCGTTTCTGTCTGCCATTATTGTTAATCCACTTGATGTGGCCAAGACGAGGTTGCAAGCTCAGGCAGCTGGTGTGCCTTACTCGCATCCGCTAAGTAATATCACGAGTCGCATGGCTTTTTTCGGCCCTACCATGCTGTTTGCGGATCTAAGGTGTTCACCATCGTGCACACGTGCTGGAATTCATGGTACTGTATCAATATGCCCACCAGATTGTTTTCAGTACAAAGGCACACTGGATGTTTTCTACAAAATCATTCGACAGGAAGGGTTTGCAAGGTTATGGAGAGGCACAAATGCAGGATTGGCACTGGCTATTCCAACAGTGGGAATCTATCTACCATGCTATGACATATTTCGCAACTGGTTAGAAGAATTCACTGCCCGTAATGCTCCCAGCACGAGTGTATATGTTCCTCTAGTTGCTGGCTCTTTGGCACGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTTAAAGTGATACAAAATGGTGCAAAGCCTCCTGGTGTTTTGAGGACTCTATTGGACGTTGTCTCTCATGTCAAGACCTCAAGTAATGCTGAAAGCAACTTAAGAGGCTATCGTGTCCTCTGGACCGGCATGGGAGCACAACTTGCTCGTGATGTTCCCTACTCTGCAATCTGTTGGTCGACTCTCGAGCCAATCAGAAGAAGACTTCTTAATCTTGTGGGTGATGAAGCAAATGCAGTCAGTATCTTTGGGGCAAATTTTTCTGCTGGTTTTGTTGCAGGAACCATAGCGGCTGCAGCTACATGTCCATTGGATGTTGCAAAGACCCGAAGACAGATAGAGAATGATCCAGTCAGGCAAATGAAAATGACGACAAGGCAAACGCTAATGGAGGTTTGGAGGGGTGGAGGACTAAAGGGACTATTCACAGGGGTCGGTCCTCGTGTTGGTCGTGCAGGCCCTTCGGTAGGGATTGTTGTTTCCTTCTATGAAGTCGTGAAGTATGCTCTACATCAACGGTATGCAACTTCATGA

Protein Analysis

413

Amino Acids

44.94

Weight (kDa)

9.38

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 146 - 194 1.5e-09 Mitochondrial carrier protein
Mito_carr PF00153 205 - 306 1e-11 Mitochondrial carrier protein
Mito_carr PF00153 319 - 408 3.8e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 887
AccII CGCG 1 cut(s) 212
AciI CCGC 6 cut(s) 182, 201, 210, 299, 353, 998
AclWI GGATC 2 cut(s) 363, 1049
AcoI YGGCCR 2 cut(s) 198, 249
AcsI RAATTY 3 cut(s) 390, 584, 964
AcvI CACGTG 1 cut(s) 383
AcyI GRCGYC 3 cut(s) 114, 158, 207
AfaI GTAC 2 cut(s) 400, 434
AfiI CCNNNNNNNGG 4 cut(s) 258, 536, 1154, 1175
AflII CTTAAG 1 cut(s) 808
AflIII ACRYGT 2 cut(s) 380, 1010
AgsI TTSAA 1 cut(s) 683
AjnI CCWGG 1 cut(s) 739
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 7 cut(s) 91, 172, 191, 269, 278, 659, 1007
AluI AGCT 7 cut(s) 91, 172, 191, 269, 278, 659, 1007
Alw21I GWGCWC 2 cut(s) 380, 847
Alw26I GTCTC 1 cut(s) 775
Alw44I GTGCAC 1 cut(s) 376
AlwI GGATC 2 cut(s) 363, 1049
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 4 cut(s) 198, 249, 334, 1165
ApaLI GTGCAC 1 cut(s) 376
ApeKI GCWGC 4 cut(s) 52, 275, 1001, 1004
ApoI RAATTY 3 cut(s) 390, 584, 964
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 2 cut(s) 22, 209
AspS9I GGNCC 4 cut(s) 335, 831, 1145, 1166
AsuHPI GGTGA 3 cut(s) 46, 360, 941
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 2 cut(s) 831, 1145
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 206
BauI CACGAG 4 cut(s) 313, 610, 855, 1149
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 916, 1045
Bbv12I GWGCWC 2 cut(s) 380, 847
BbvI GCAGC 4 cut(s) 64, 287, 988, 1016
BccI CCATC 2 cut(s) 86, 379
BceAI ACGGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 1152, 1186
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 3 cut(s) 173, 629, 690
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 808
BisI GCNGC 7 cut(s) 53, 201, 210, 276, 999, 1002, 1005
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 7 cut(s) 54, 202, 211, 277, 1000, 1003, 1006
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 2 cut(s) 831, 1145
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 4 cut(s) 335, 831, 1145, 1166
BmiI GGNNCC 2 cut(s) 208, 991
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 916, 1045
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 383
BsaHI GRCGYC 3 cut(s) 114, 158, 207
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 536, 1154, 1175
Bse118I RCCGGY 2 cut(s) 203, 833
Bse1I ACTGG 4 cut(s) 450, 525, 578, 1058
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 295, 454, 1027
BseLI CCNNNNNNNGG 4 cut(s) 258, 536, 1154, 1175
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 4 cut(s) 450, 525, 578, 1058
BseSI GKGCMC 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 4 cut(s) 64, 287, 988, 1016
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 1182
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 4 cut(s) 200, 251, 336, 1167
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 380, 847
BsiHKCI CYCGRG 1 cut(s) 893
BsiSI CCGG 4 cut(s) 86, 117, 204, 834
BslFI GGGAC 1 cut(s) 1140
BslI CCNNNNNNNGG 4 cut(s) 258, 536, 1154, 1175
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 1140
BsnI GGCC 4 cut(s) 200, 251, 336, 1167
BsoBI CYCGRG 1 cut(s) 893
Bsp1286I GDGCHC 2 cut(s) 380, 847
Bsp143I GATC 2 cut(s) 355, 1054
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 6 cut(s) 182, 201, 210, 299, 353, 998
BspANI GGCC 4 cut(s) 200, 251, 336, 1167
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 212
BspHI TCATGA 1 cut(s) 1238
BspLI GGNNCC 2 cut(s) 208, 991
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 2 cut(s) 363, 1049
BspT107I GGYRCC 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 808
BsrFI RCCGGY 2 cut(s) 203, 833
BsrI ACTGG 4 cut(s) 450, 525, 578, 1058
BssAI RCCGGY 2 cut(s) 203, 833
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 355, 1054
BssNI GRCGYC 3 cut(s) 114, 158, 207
BssSI CACGAG 4 cut(s) 313, 610, 855, 1149
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 4 cut(s) 313, 610, 855, 1149
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 4 cut(s) 65, 403, 535, 1227
BstACI GRCGYC 3 cut(s) 114, 158, 207
BstAFI CTTAAG 1 cut(s) 808
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 7 cut(s) 205, 267, 637, 649, 701, 705, 1165
BstDEI CTNAG 4 cut(s) 126, 270, 302, 359
BstENI CCTNNNNNAGG 1 cut(s) 1173
BstF5I GGATG 3 cut(s) 295, 454, 1027
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 22, 209
BstKTI GATC 2 cut(s) 358, 1057
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 2 cut(s) 355, 1054
BstMCI CGRYCG 1 cut(s) 201
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 2 cut(s) 703, 1014
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 1002
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 4 cut(s) 64, 287, 988, 1016
BstV2I GAAGAC 2 cut(s) 916, 1045
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BstZI CGGCCG 1 cut(s) 198
BsuRI GGCC 4 cut(s) 200, 251, 336, 1167
BtsCI GGATG 3 cut(s) 295, 454, 1027
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 4 cut(s) 443, 518, 540, 588
Cac8I GCNNGC 7 cut(s) 205, 267, 637, 649, 701, 705, 1165
CciI TCATGA 1 cut(s) 1238
CfoI GCGC 2 cut(s) 22, 209
Cfr10I RCCGGY 2 cut(s) 203, 833
Cfr13I GGNCC 4 cut(s) 335, 831, 1145, 1166
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 399, 433
CviQI GTAC 2 cut(s) 399, 433
DdeI CTNAG 4 cut(s) 126, 270, 302, 359
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 357, 1056
DpnII GATC 2 cut(s) 355, 1054
DraI TTTAAA 1 cut(s) 712
EaeI YGGCCR 2 cut(s) 198, 249
EagI CGGCCG 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 831, 1145
Eco52I CGGCCG 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 893
EcoNI CCTNNNNNAGG 1 cut(s) 1173
EcoO109I RGGNCCY 1 cut(s) 1166
EcoRI GAATTC 2 cut(s) 390, 584
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 29
FaqI GGGAC 1 cut(s) 1140
FblI GTMKAC 1 cut(s) 887
Fnu4HI GCNGC 7 cut(s) 53, 201, 210, 276, 999, 1002, 1005
FokI GGATG 3 cut(s) 282, 461, 1034
Fsp4HI GCNGC 7 cut(s) 53, 201, 210, 276, 999, 1002, 1005
FspBI CTAG 3 cut(s) 173, 629, 690
GlaI GCGC 2 cut(s) 21, 208
GluI GCNGC 7 cut(s) 53, 201, 210, 276, 999, 1002, 1005
GsaI CCCAGC 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 4 cut(s) 200, 251, 336, 1167
HapII CCGG 4 cut(s) 86, 117, 204, 834
HgaI GACGC 1 cut(s) 122
HhaI GCGC 2 cut(s) 22, 209
Hin1I GRCGYC 3 cut(s) 114, 158, 207
Hin6I GCGC 2 cut(s) 20, 207
HinP1I GCGC 2 cut(s) 20, 207
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HinfI GANTC 6 cut(s) 25, 120, 316, 540, 754, 889
HpaII CCGG 4 cut(s) 86, 117, 204, 834
HphI GGTGA 3 cut(s) 46, 360, 941
Hpy166II GTNNAC 3 cut(s) 368, 378, 888
Hpy188I TCNGA 2 cut(s) 163, 905
Hpy188III TCNNGA 7 cut(s) 313, 781, 829, 857, 893, 1204, 1239
Hpy8I GTNNAC 3 cut(s) 368, 378, 888
Hpy99I CGWCG 4 cut(s) 65, 116, 160, 163
HpyAV CCTTC 3 cut(s) 470, 1179, 1201
HpyCH4III ACNGT 4 cut(s) 65, 403, 535, 1227
HpyCH4IV ACGT 3 cut(s) 158, 382, 765
HpyF3I CTNAG 4 cut(s) 126, 270, 302, 359
HpySE526I ACGT 3 cut(s) 158, 382, 765
Hsp92I GRCGYC 3 cut(s) 114, 158, 207
HspAI GCGC 2 cut(s) 20, 207
KasI GGCGCC 1 cut(s) 206
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 355, 1054
LmnI GCTCC 3 cut(s) 88, 607, 842
Lsp1109I GCAGC 4 cut(s) 64, 287, 988, 1016
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 173, 629, 690
MaeII ACGT 3 cut(s) 158, 382, 765
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 357, 1056
MboI GATC 2 cut(s) 355, 1054
MboII GAAGA 4 cut(s) 593, 918, 921, 1050
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 380, 847
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 3 cut(s) 390, 584, 964
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 3 cut(s) 325, 748, 883
MmeI TCCRAC 2 cut(s) 141, 554
Mox20I TGGCCA 1 cut(s) 251
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MscI TGGCCA 1 cut(s) 251
MseI TTAA 4 cut(s) 234, 711, 809, 918
MslI CAYNNNNRTG 1 cut(s) 373
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 808
MspI CCGG 4 cut(s) 86, 117, 204, 834
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 212
NaeI GCCGGC 1 cut(s) 205
NarI GGCGCC 1 cut(s) 207
NdeII GATC 2 cut(s) 355, 1054
NgoMIV GCCGGC 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 208, 991
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 2 cut(s) 703, 1014
OliI CACNNNNGTG 1 cut(s) 373
PaeI GCATGC 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 893
PagI TCATGA 1 cut(s) 1238
PciI ACATGT 1 cut(s) 1010
PcsI WCGNNNNNNNCGW 1 cut(s) 1156
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 25, 120, 540
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 7 cut(s) 54, 202, 211, 277, 1000, 1003, 1006
PleI GAGTC 3 cut(s) 324, 748, 883
PluTI GGCGCC 1 cut(s) 210
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 3 cut(s) 324, 748, 883
Ppu21I YACGTR 1 cut(s) 383
PscI ACATGT 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 739
PspCI CACGTG 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 208, 991
PspPI GGNCC 4 cut(s) 335, 831, 1145, 1166
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 2 cut(s) 400, 434
RsaNI GTAC 2 cut(s) 399, 433
RseI CAYNNNNRTG 1 cut(s) 373
SalI GTCGAC 1 cut(s) 886
SaqAI TTAA 4 cut(s) 234, 711, 809, 918
SatI GCNGC 7 cut(s) 53, 201, 210, 276, 999, 1002, 1005
Sau3AI GATC 2 cut(s) 355, 1054
Sau96I GGNCC 4 cut(s) 335, 831, 1145, 1166
SchI GAGTC 3 cut(s) 325, 748, 883
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 380, 847
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 1002
SfoI GGCGCC 1 cut(s) 208
Sfr274I CTCGAG 1 cut(s) 893
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 2 cut(s) 831, 1145
SlaI CTCGAG 1 cut(s) 893
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 787, 808, 893
SmoI CTYRAG 3 cut(s) 787, 808, 893
SphI GCATGC 1 cut(s) 703
Sse9I AATT 3 cut(s) 390, 584, 964
SsiI CCGC 6 cut(s) 182, 201, 210, 299, 353, 998
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 3 cut(s) 173, 629, 690
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 4 cut(s) 65, 403, 535, 1227
TaiI ACGT 3 cut(s) 161, 385, 768
TaqI TCGA 4 cut(s) 60, 469, 887, 894
TaqII GACCGA 1 cut(s) 1133
TasI AATT 3 cut(s) 390, 584, 964
TatI WGTACW 1 cut(s) 432
TauI GCSGC 3 cut(s) 203, 212, 1001
TfiI GAWTC 3 cut(s) 25, 120, 540
Tru1I TTAA 4 cut(s) 234, 711, 809, 918
Tru9I TTAA 4 cut(s) 234, 711, 809, 918
TscAI CASTG 4 cut(s) 450, 525, 540, 595
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 52, 275, 1001, 1004
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 383, 948, 1085, 1212, 1227
TspRI CASTG 4 cut(s) 450, 525, 540, 595
Tth111I GACNNNGTC 1 cut(s) 767
Vha464I CTTAAG 1 cut(s) 808
VneI GTGCAC 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 831, 1145
XagI CCTNNNNNAGG 1 cut(s) 1173
XapI RAATTY 3 cut(s) 390, 584, 964
XceI RCATGY 2 cut(s) 703, 1014
XhoI CTCGAG 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 887
XspI CTAG 3 cut(s) 173, 629, 690
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.