Rh1AG441600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
66342624 .. 66345698
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG441600.1

Sequence Viewer

Length: 1125 bp
ATGGTGGAGTTGGAGAGGGCGCAGAATCCTTGGGTGAGTAGTAGTGACGAGCAGCAAATCGACCGAGTTGAAATCGACGGTAGAGATTTGTCCATCATGCCGGAGCTGTCGGTTTTGGACAGAGGCGATGCCGGATTCGCAAGGCCGGACGGCGAGAGGTGTAAAACGACGTCGGATTGGAAGCTAGGGGTTGCGGAGCGAGCTTTCTCGGCCGCCGGCGCCGCGTTTTTGTCTGCCATTATTGTTAATCCACTTGATGTGGCCAAGACGAGGTTGCAAGCTCAGGCAGCTGGTGTGCCTTACTCGCATCCGCTAAGTAATATCACGAGTCGCATGGCTTTTTTCGGCCCTACCATGCTGTTTGCGGATCTAAGGTGTTCACCATCGTGCACACGTGCTGGAATTCATGGTACTGTATCAATATGCCCACCAGATTGTTTTCAGTACAAAGGCACACTGGATGTTTTCTACAAAATCATTCGACAGGAAGGGTTTGCAAGGTTATGGAGAGGCACAAATGCAGGATTGGCACTGGCTATTCCAACAGTGGGAATCTATCTACCATGCTATGACATATTTCGCAACTGGTTAGAAGAATTCACTGCCCGTAATGCTCCCAGCACGAGTATATATGTTCCTTTAGTTGCTGGCTCTTTGGCACGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTTAAAGTGATCCAAAATGGTGCAAAGCCTCCTGGTGTTTTGAGGACTCTATTGGACGTTGTCTCTCATGTCAAGACCACAAGTAATGCTGAAAGCAACTTAAGAGGCTATCGTGTCCTCTGGACCGGCATGGGAGCACAACTTGCTCGTGATGTTCCCTACTCTGCAATCTGTTGGTCGACTCTCGAGCCAATCAGAAGAAGACTTCTTAATCTTGTGGGTGATGAAGCAAATGCAGTCAGTATCTTTGGGGCAAATTTTTCTGCTGGTTTTGTTGCAGGAACCATTGCGGCTGCAGCTACATGTCCATTGGATGTTGCAAAGACCCGAAGACAGATAGAGGCAAATGAAAATGACGACAAGGCAAACGCTAATGGAGGTTTGGAGGTATACATCTCATCTTAA

Protein Analysis

374

Amino Acids

40.58

Weight (kDa)

8.01

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 150 - 198 1.3e-09 Mitochondrial carrier protein
Mito_carr PF00153 209 - 310 4.7e-12 Mitochondrial carrier protein
Mito_carr PF00153 323 - 361 1.5e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 2 cut(s) 899, 1110
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 194, 213, 222, 311, 365, 1010
AclWI GGATC 2 cut(s) 375, 724
AcoI YGGCCR 2 cut(s) 210, 261
AcsI RAATTY 3 cut(s) 402, 596, 976
AcvI CACGTG 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 170, 219
AfaI GTAC 2 cut(s) 412, 446
AfiI CCNNNNNNNGG 2 cut(s) 270, 548
AflII CTTAAG 1 cut(s) 820
AflIII ACRYGT 2 cut(s) 392, 1022
AgsI TTSAA 2 cut(s) 71, 695
AjnI CCWGG 1 cut(s) 751
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 7 cut(s) 106, 184, 203, 281, 290, 671, 1019
AluI AGCT 7 cut(s) 106, 184, 203, 281, 290, 671, 1019
Alw21I GWGCWC 2 cut(s) 392, 859
Alw26I GTCTC 1 cut(s) 787
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 2 cut(s) 375, 724
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 4 cut(s) 143, 210, 261, 346
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 52, 287, 1013, 1016
ApoI RAATTY 3 cut(s) 402, 596, 976
AspLEI GCGC 2 cut(s) 22, 221
AspS9I GGNCC 2 cut(s) 347, 843
AsuHPI GGTGA 3 cut(s) 46, 372, 953
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 1 cut(s) 843
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 218
BauI CACGAG 3 cut(s) 325, 622, 867
BbrPI CACGTG 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 928, 1057
Bbv12I GWGCWC 2 cut(s) 392, 859
BbvI GCAGC 4 cut(s) 64, 299, 1000, 1028
BccI CCATC 2 cut(s) 101, 391
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 2 cut(s) 185, 702
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 820
BisI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
BlsI GCNGC 7 cut(s) 54, 214, 223, 289, 1012, 1015, 1018
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 2 cut(s) 347, 843
BmiI GGNNCC 2 cut(s) 220, 1003
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 118, 316
BpiI GAAGAC 2 cut(s) 928, 1057
Bpu10I CCTNAGC 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 170, 219
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 548
Bse118I RCCGGY 2 cut(s) 215, 845
Bse1I ACTGG 3 cut(s) 462, 537, 590
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 307, 466, 1039
BseLI CCNNNNNNNGG 2 cut(s) 270, 548
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 462, 537, 590
BseSI GKGCMC 1 cut(s) 392
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 64, 299, 1000, 1028
BseYI CCCAGC 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 2 cut(s) 64, 213
BshFI GGCC 4 cut(s) 145, 212, 263, 348
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 2 cut(s) 64, 213
BsiHKAI GWGCWC 2 cut(s) 392, 859
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 5 cut(s) 101, 132, 146, 216, 846
BslI CCNNNNNNNGG 2 cut(s) 270, 548
BsmAI GTCTC 1 cut(s) 787
BsnI GGCC 4 cut(s) 145, 212, 263, 348
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 2 cut(s) 392, 859
Bsp143I GATC 2 cut(s) 367, 729
BspACI CCGC 6 cut(s) 194, 213, 222, 311, 365, 1010
BspANI GGCC 4 cut(s) 145, 212, 263, 348
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 220, 1003
BspMAI CTGCAG 1 cut(s) 1018
BspPI GGATC 2 cut(s) 375, 724
BspT107I GGYRCC 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 820
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 2 cut(s) 215, 845
BsrI ACTGG 3 cut(s) 462, 537, 590
BssAI RCCGGY 2 cut(s) 215, 845
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 367, 729
BssNAI GTATAC 1 cut(s) 1111
BssNI GRCGYC 2 cut(s) 170, 219
BssSI CACGAG 3 cut(s) 325, 622, 867
BssT1I CCWWGG 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 1111
Bst2BI CACGAG 3 cut(s) 325, 622, 867
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 3 cut(s) 80, 415, 547
BstACI GRCGYC 2 cut(s) 170, 219
BstAFI CTTAAG 1 cut(s) 820
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 7 cut(s) 201, 217, 279, 649, 661, 713, 717
BstDEI CTNAG 3 cut(s) 282, 314, 371
BstF5I GGATG 3 cut(s) 307, 466, 1039
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 22, 221
BstKTI GATC 2 cut(s) 370, 732
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 2 cut(s) 367, 729
BstMCI CGRYCG 2 cut(s) 64, 213
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 715, 1026
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 64, 299, 1000, 1028
BstV2I GAAGAC 2 cut(s) 928, 1057
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 1111
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 4 cut(s) 145, 212, 263, 348
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 307, 466, 1039
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 4 cut(s) 455, 530, 552, 600
Cac8I GCNNGC 7 cut(s) 201, 217, 279, 649, 661, 713, 717
CfoI GCGC 2 cut(s) 22, 221
Cfr10I RCCGGY 2 cut(s) 215, 845
Cfr13I GGNCC 2 cut(s) 347, 843
Csp6I GTAC 2 cut(s) 411, 445
CviAII CATG 9 cut(s) 97, 334, 355, 407, 564, 712, 788, 850, 1023
CviQI GTAC 2 cut(s) 411, 445
DdeI CTNAG 3 cut(s) 282, 314, 371
DinI GGCGCC 1 cut(s) 220
DpnI GATC 2 cut(s) 369, 731
DpnII GATC 2 cut(s) 367, 729
DraI TTTAAA 1 cut(s) 724
EaeI YGGCCR 2 cut(s) 210, 261
EagI CGGCCG 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 843
Eco52I CGGCCG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 905
EcoRI GAATTC 2 cut(s) 402, 596
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 9 cut(s) 100, 337, 358, 410, 567, 715, 791, 853, 1026
FatI CATG 9 cut(s) 96, 333, 354, 406, 563, 711, 787, 849, 1022
FblI GTMKAC 2 cut(s) 899, 1110
Fnu4HI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
FokI GGATG 3 cut(s) 294, 473, 1046
Fsp4HI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
FspBI CTAG 2 cut(s) 185, 702
GlaI GCGC 2 cut(s) 21, 220
GluI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
GsaI CCCAGC 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 4 cut(s) 145, 212, 263, 348
HapII CCGG 5 cut(s) 101, 132, 146, 216, 846
HhaI GCGC 2 cut(s) 22, 221
Hin1I GRCGYC 2 cut(s) 170, 219
Hin1II CATG 9 cut(s) 100, 337, 358, 410, 567, 715, 791, 853, 1026
Hin6I GCGC 2 cut(s) 20, 219
HinP1I GCGC 2 cut(s) 20, 219
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HinfI GANTC 6 cut(s) 25, 135, 328, 552, 766, 901
HpaII CCGG 5 cut(s) 101, 132, 146, 216, 846
HphI GGTGA 3 cut(s) 46, 372, 953
Hpy166II GTNNAC 4 cut(s) 380, 390, 900, 1111
Hpy188I TCNGA 2 cut(s) 175, 917
Hpy188III TCNNGA 5 cut(s) 325, 793, 841, 869, 905
Hpy8I GTNNAC 4 cut(s) 380, 390, 900, 1111
Hpy99I CGWCG 3 cut(s) 80, 172, 175
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 3 cut(s) 80, 415, 547
HpyCH4IV ACGT 3 cut(s) 170, 394, 777
HpyF3I CTNAG 3 cut(s) 282, 314, 371
HpySE526I ACGT 3 cut(s) 170, 394, 777
Hsp92I GRCGYC 2 cut(s) 170, 219
Hsp92II CATG 9 cut(s) 100, 337, 358, 410, 567, 715, 791, 853, 1026
HspAI GCGC 2 cut(s) 20, 219
KasI GGCGCC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 367, 729
LmnI GCTCC 4 cut(s) 103, 196, 619, 854
Lsp1109I GCAGC 4 cut(s) 64, 299, 1000, 1028
LweI GCATC 2 cut(s) 118, 316
MaeI CTAG 2 cut(s) 185, 702
MaeII ACGT 3 cut(s) 170, 394, 777
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 369, 731
MboI GATC 2 cut(s) 367, 729
MboII GAAGA 4 cut(s) 605, 930, 933, 1062
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 392, 859
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 402, 596, 976
MluNI TGGCCA 1 cut(s) 263
Mly113I GGCGCC 1 cut(s) 219
MlyI GAGTC 3 cut(s) 337, 760, 895
MmeI TCCRAC 2 cut(s) 153, 566
Mox20I TGGCCA 1 cut(s) 263
MreI CGCCGGCG 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 215
MscI TGGCCA 1 cut(s) 263
MseI TTAA 5 cut(s) 246, 723, 821, 930, 1123
MslI CAYNNNNRTG 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 5 cut(s) 101, 132, 146, 216, 846
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 1 cut(s) 224
NaeI GCCGGC 1 cut(s) 217
NarI GGCGCC 1 cut(s) 219
NdeII GATC 2 cut(s) 367, 729
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 9 cut(s) 100, 337, 358, 410, 567, 715, 791, 853, 1026
NlaIV GGNNCC 2 cut(s) 220, 1003
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 2 cut(s) 715, 1026
OliI CACNNNNGTG 1 cut(s) 385
PaeI GCATGC 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 905
PciI ACATGT 1 cut(s) 1022
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 3 cut(s) 25, 135, 552
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 7 cut(s) 54, 214, 223, 289, 1012, 1015, 1018
PleI GAGTC 3 cut(s) 336, 760, 895
PluTI GGCGCC 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
PpsI GAGTC 3 cut(s) 336, 760, 895
Ppu21I YACGTR 1 cut(s) 395
PscI ACATGT 1 cut(s) 1022
Psp6I CCWGG 1 cut(s) 751
PspCI CACGTG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 220, 1003
PspPI GGNCC 2 cut(s) 347, 843
PstI CTGCAG 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 412, 446
RsaNI GTAC 2 cut(s) 411, 445
RseI CAYNNNNRTG 1 cut(s) 385
SalI GTCGAC 1 cut(s) 898
SaqAI TTAA 5 cut(s) 246, 723, 821, 930, 1123
SatI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
Sau3AI GATC 2 cut(s) 367, 729
Sau96I GGNCC 2 cut(s) 347, 843
SchI GAGTC 3 cut(s) 337, 760, 895
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 392, 859
SfaNI GCATC 2 cut(s) 118, 316
SfcI CTRYAG 1 cut(s) 1014
SfoI GGCGCC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 905
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 1 cut(s) 843
SlaI CTCGAG 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 820, 905
SmoI CTYRAG 2 cut(s) 820, 905
SphI GCATGC 1 cut(s) 715
Sse9I AATT 3 cut(s) 402, 596, 976
SsiI CCGC 6 cut(s) 194, 213, 222, 311, 365, 1010
SspDI GGCGCC 1 cut(s) 218
SspMI CTAG 2 cut(s) 185, 702
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 80, 415, 547
TaiI ACGT 3 cut(s) 173, 397, 780
TaqI TCGA 5 cut(s) 60, 75, 481, 899, 906
TaqII GACCGA 1 cut(s) 78
TasI AATT 3 cut(s) 402, 596, 976
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 215, 224, 1013
TfiI GAWTC 3 cut(s) 25, 135, 552
Tru1I TTAA 5 cut(s) 246, 723, 821, 930, 1123
Tru9I TTAA 5 cut(s) 246, 723, 821, 930, 1123
TscAI CASTG 4 cut(s) 462, 537, 552, 607
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 52, 287, 1013, 1016
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 395, 960, 1083
TspRI CASTG 4 cut(s) 462, 537, 552, 607
Tth111I GACNNNGTC 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 820
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 3 cut(s) 402, 596, 976
XceI RCATGY 2 cut(s) 715, 1026
XhoI CTCGAG 1 cut(s) 905
XmiI GTMKAC 2 cut(s) 899, 1110
XspI CTAG 2 cut(s) 185, 702
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.