Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Forward (+)

34707937 .. 34711592

Gene Structure 3656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1284500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGCATGGAGCAAACGCACTCGGTTGGGATTGACGGTGTAGATTTGTCGGGCCCGGAATCAACCGCTACGGTTAGAGATGGGGCTGAGTTCTCTGCCGCGCAGCTTCCCAGAACCTCGGACTGGCAATTGGGAGTTGCCGAGCGAGCTTTCTCGGCGGCGGGGGCTGCGTTTTTATCGGCGATTATTGTTAATCCGCTTGATGTTGTAAAGACGAGGTTGCAAGCTCAGGCAGCTGGGGTTCCTTACTCGCATCCACTAAGTAATGTCATTAGTCGGATGGCATATTTCGGGCCAAGCATGATGTTTGCGGATCTAAGGTGTTCACCAACATGCACTCGAGCTGGAATTCAAGGCACTGTTTCAATATGTCCTCCAGATTGTTTTCAGTACAAAGGCACATTGGATGTCTTCTACAAAATCATTAGACAGGAAGGATTTGCAAGGTTATGGAGAGGCACAAATGCAGGGTTAGCCCTCGCTGTTCCAACAGTGGGAATTTATCTACCATGCTATGATGTGTTTCGCAACCGGTTAGAGGAATTCACTGCCCATAATGCACCAAGCGTGACAGCTTATGTCCCGCTAGTTGCCGGCTCTTTGGCTCGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTCAAAGTGATACAAAATGGCGGGAAGCCTCCTGGTGTTTTGAAGACTTTATTTGGTGTCGTCTCTCATGTCAAGACGACAAGTCATGTGCAGAGCAACTTGCAAGGTTTTCGCATCCTGTGGACTGGTATGGGAGCACAGCTTGCTCGTGATGTTCCCTTCTCAGGAATCTGTTGGGCAACCCTTGAGCCACTCAGGAGAAAACTTCTTGGTCTGGTGGGTGATGAAGCCAGCGCACTCAATATTCTTGGGGCAAATTTTTCCGCTGCTTTTGTTGCAGGAAGCCTTGCTGCTGCAGCTACATGTCCGTTGGATGTTGCAAAAACCCGAAGGCAGATAGAGAATGATCCAGTCAGGGCAATGAAAATGACAACACGGCAAACACTAATGGAGATTTGGAGGGGTGGAGGTTTGAAGGGATTGTTCACAGGAGTTGGCCCTCGCGTTGCCCGCGCTGGCCCCTCTGTTGGGATCGTGGTTTCCTTCTACGAAGTTGTGAAGTATGTTCTCCATCAGCGGTATGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

400

Amino Acids

42.8

Weight (kDa)

9.47

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	45 - 85	2e-06	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 180	3.7e-09	Mitochondrial carrier protein
Mito_carr	PF00153	191 - 291	1.2e-11	Mitochondrial carrier protein
Mito_carr	PF00153	306 - 394	1.9e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	101, 1110, 1119
AclWI	GGATC	3 cut(s)	321, 1007, 1145
AcsI	RAATTY	4 cut(s)	348, 498, 542, 922
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	6 cut(s)	123, 494, 538, 830, 1133, 1134
AflIII	ACRYGT	1 cut(s)	968
AgeI	ACCGGT	1 cut(s)	531
AgsI	TTSAA	6 cut(s)	353, 366, 641, 670, 709, 1081
AhdI	GACNNNNNGTC	1 cut(s)	747
AjnI	CCWGG	1 cut(s)	697
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	3 cut(s)	321, 1007, 1145
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	4 cut(s)	52, 293, 1102, 1123
ApaI	GGGCCC	1 cut(s)	56
ApeKI	GCWGC	8 cut(s)	103, 167, 233, 932, 956, 959, 962, 1190
ApoI	RAATTY	4 cut(s)	348, 498, 542, 922
AsiGI	ACCGGT	1 cut(s)	531
AspLEI	GCGC	3 cut(s)	103, 902, 1121
AspS9I	GGNCC	5 cut(s)	52, 53, 293, 1103, 1124
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	318, 899
AvaI	CYCGRG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	2 cut(s)	403, 716
Bbv12I	GWGCWC	1 cut(s)	805
BbvI	GCAGC	7 cut(s)	115, 154, 245, 919, 943, 946, 974
BccI	CCATC	3 cut(s)	74, 274, 1185
BceAI	ACGGC	1 cut(s)	1058
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	2 cut(s)	587, 648
BfmI	CTRYAG	1 cut(s)	960
Bme1390I	CCNGG	2 cut(s)	56, 699
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	5 cut(s)	52, 53, 293, 1103, 1124
BmiI	GGNNCC	3 cut(s)	54, 243, 1126
BmrFI	CCNGG	2 cut(s)	56, 699
BmsI	GCATC	2 cut(s)	262, 789
BpiI	GAAGAC	2 cut(s)	403, 716
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	6 cut(s)	123, 494, 538, 830, 1133, 1134
Bse118I	RCCGGY	2 cut(s)	531, 593
Bse1I	ACTGG	3 cut(s)	128, 796, 1016
Bse3DI	GCAATG	1 cut(s)	1032
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	5 cut(s)	253, 285, 412, 780, 985
BseLI	CCNNNNNNNGG	6 cut(s)	123, 494, 538, 830, 1133, 1134
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	4 cut(s)	78, 242, 843, 874
BseNI	ACTGG	3 cut(s)	128, 796, 1016
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	7 cut(s)	115, 154, 245, 919, 943, 946, 974
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	3 cut(s)	101, 1110, 1119
BshFI	GGCC	4 cut(s)	54, 295, 1104, 1125
BshTI	ACCGGT	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	56, 532, 594
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	6 cut(s)	123, 494, 538, 830, 1133, 1134
BsmAI	GTCTC	1 cut(s)	733
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	4 cut(s)	54, 295, 1104, 1125
BsoBI	CYCGRG	1 cut(s)	339
Bsp120I	GGGCCC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	56, 805
Bsp143I	GATC	3 cut(s)	313, 1012, 1137
BspANI	GGCC	4 cut(s)	54, 295, 1104, 1125
BspCNI	CTCAG	4 cut(s)	79, 241, 842, 873
BspFNI	CGCG	3 cut(s)	101, 1110, 1119
BspHI	TCATGA	1 cut(s)	1196
BspLI	GGNNCC	3 cut(s)	54, 243, 1126
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	3 cut(s)	321, 1007, 1145
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	2 cut(s)	531, 593
BsrI	ACTGG	3 cut(s)	128, 796, 1016
BssAI	RCCGGY	2 cut(s)	531, 593
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	313, 1012, 1137
BssSI	CACGAG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	4 cut(s)	38, 73, 361, 493
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstDEI	CTNAG	6 cut(s)	87, 228, 260, 317, 829, 860
BstF5I	GGATG	5 cut(s)	253, 285, 412, 780, 985
BstFNI	CGCG	3 cut(s)	101, 1110, 1119
BstHHI	GCGC	3 cut(s)	103, 902, 1121
BstKTI	GATC	3 cut(s)	316, 1015, 1140
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	3 cut(s)	313, 1012, 1137
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	3 cut(s)	336, 661, 972
BstSCI	CCNGG	2 cut(s)	54, 697
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	56
BstUI	CGCG	3 cut(s)	101, 1110, 1119
BstV1I	GCAGC	7 cut(s)	115, 154, 245, 919, 943, 946, 974
BstV2I	GAAGAC	2 cut(s)	403, 716
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	54, 295, 1104, 1125
BtsCI	GGATG	5 cut(s)	253, 285, 412, 780, 985
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	3 cut(s)	357, 498, 546
CciI	TCATGA	1 cut(s)	1196
CfoI	GCGC	3 cut(s)	103, 902, 1121
Cfr10I	RCCGGY	2 cut(s)	531, 593
Cfr13I	GGNCC	5 cut(s)	52, 53, 293, 1103, 1124
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	531
CviAII	CATG	9 cut(s)	7, 301, 333, 510, 658, 734, 752, 969, 1197
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	6 cut(s)	87, 228, 260, 317, 829, 860
DpnI	GATC	3 cut(s)	315, 1014, 1139
DpnII	GATC	3 cut(s)	313, 1012, 1137
DriI	GACNNNNNGTC	1 cut(s)	747
Eam1105I	GACNNNNNGTC	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	339
EcoRI	GAATTC	2 cut(s)	348, 542
EcoRII	CCWGG	1 cut(s)	697
EcoT38I	GRGCYC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	733
FaeI	CATG	9 cut(s)	10, 304, 336, 513, 661, 737, 755, 972, 1200
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	9 cut(s)	6, 300, 332, 509, 657, 733, 751, 968, 1196
FauI	CCCGC	4 cut(s)	154, 591, 680, 1124
FokI	GGATG	5 cut(s)	240, 292, 419, 767, 992
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	587, 648
GlaI	GCGC	3 cut(s)	102, 901, 1120
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	54, 295, 1104, 1125
HapII	CCGG	3 cut(s)	56, 532, 594
HhaI	GCGC	3 cut(s)	103, 902, 1121
Hin1II	CATG	9 cut(s)	10, 304, 336, 513, 661, 737, 755, 972, 1200
Hin6I	GCGC	3 cut(s)	101, 900, 1119
HinP1I	GCGC	3 cut(s)	101, 900, 1119
HinfI	GANTC	2 cut(s)	59, 834
HpaII	CCGG	3 cut(s)	56, 532, 594
HphI	GGTGA	2 cut(s)	318, 899
Hpy166II	GTNNAC	3 cut(s)	326, 789, 1092
Hpy188I	TCNGA	2 cut(s)	121, 279
Hpy188III	TCNNGA	6 cut(s)	377, 739, 815, 831, 862, 1197
Hpy8I	GTNNAC	3 cut(s)	326, 789, 1092
HpyAV	CCTTC	5 cut(s)	428, 835, 990, 1075, 1159
HpyCH4III	ACNGT	4 cut(s)	38, 73, 361, 493
HpyF3I	CTNAG	6 cut(s)	87, 228, 260, 317, 829, 860
Hsp92II	CATG	9 cut(s)	10, 304, 336, 513, 661, 737, 755, 972, 1200
HspAI	GCGC	3 cut(s)	101, 900, 1119
KroI	GCCGGC	1 cut(s)	593
KroNI	GCCGGC	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	313, 1012, 1137
LmnI	GCTCC	2 cut(s)	10, 800
Lsp1109I	GCAGC	7 cut(s)	115, 154, 245, 919, 943, 946, 974
LweI	GCATC	2 cut(s)	262, 789
MaeI	CTAG	2 cut(s)	587, 648
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	3 cut(s)	315, 1014, 1139
MboI	GATC	3 cut(s)	313, 1012, 1137
MboII	GAAGA	2 cut(s)	403, 721
MfeI	CAATTG	1 cut(s)	128
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	56, 805
MluCI	AATT	5 cut(s)	128, 348, 498, 542, 922
MmeI	TCCRAC	3 cut(s)	257, 512, 957
MroNI	GCCGGC	1 cut(s)	593
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	331
MspA1I	CMGCKG	3 cut(s)	236, 932, 1183
MspI	CCGG	3 cut(s)	56, 532, 594
MspR9I	CCNGG	2 cut(s)	56, 699
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	3 cut(s)	101, 1110, 1119
NaeI	GCCGGC	1 cut(s)	595
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	313, 1012, 1137
NgoMIV	GCCGGC	1 cut(s)	593
NlaIII	CATG	9 cut(s)	10, 304, 336, 513, 661, 737, 755, 972, 1200
NlaIV	GGNNCC	3 cut(s)	54, 243, 1126
NmeAIII	GCCGAG	2 cut(s)	134, 166
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	3 cut(s)	336, 661, 972
PaeI	GCATGC	1 cut(s)	661
PaeR7I	CTCGAG	1 cut(s)	339
PagI	TCATGA	1 cut(s)	1196
PciI	ACATGT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	665
PdiI	GCCGGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	59, 834
PinAI	ACCGGT	1 cut(s)	531
PscI	ACATGT	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	3 cut(s)	54, 243, 1126
PspOMI	GGGCCC	1 cut(s)	52
PspPI	GGNCC	5 cut(s)	52, 53, 293, 1103, 1124
PspXI	VCTCGAGB	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	313, 1012, 1137
Sau96I	GGNCC	5 cut(s)	52, 53, 293, 1103, 1124
ScrFI	CCNGG	2 cut(s)	56, 699
SduI	GDGCHC	2 cut(s)	56, 805
SfaNI	GCATC	2 cut(s)	262, 789
SfcI	CTRYAG	1 cut(s)	960
Sfr274I	CTCGAG	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	339, 851
SmoI	CTYRAG	2 cut(s)	339, 851
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	5 cut(s)	128, 348, 498, 542, 922
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	2 cut(s)	587, 648
StyD4I	CCNGG	2 cut(s)	54, 697
TaaI	ACNGT	4 cut(s)	38, 73, 361, 493
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	128, 348, 498, 542, 922
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	101, 161
TfiI	GAWTC	2 cut(s)	59, 834
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	364, 498, 553
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	8 cut(s)	103, 167, 233, 932, 956, 959, 962, 1190
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	906, 1043, 1185
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	3 cut(s)	364, 498, 553
XapI	RAATTY	4 cut(s)	348, 498, 542, 922
XceI	RCATGY	3 cut(s)	336, 661, 972
XhoI	CTCGAG	1 cut(s)	339
XspI	CTAG	2 cut(s)	587, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.