Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Forward (+)

26034922 .. 26038115

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATGAGCACGGAGCAGACGCACTCGATGGGGCTGAGTTCTCTGCCGCGCAGCTTCCCATAACGTCCGACTGGCAATTGGGAGTTGCCGAGCGAGCTTTCTCGGCGGCGGGGGCAGCATTTTTATCGGCGATTATTGTTAATCCACTTGATGTTGTAAAGACAAGGTTGCAAGCTCAGGCAGCTGGGGTTCCTTACTCGCATCCACTAAGTAATGTCATTAGTCGGATGGCATATTTTGGGCCAAGCATGATGTTTGCGGATCTAAGATGTTCACCATCATGCACTCGGGCTGGAATTCAAGGCACTGTTTCAATATGTCCTCCGGATTGTTTTCAGTACAAAGGCACATTGGATGTCTTCTACAAAATAATTAGACAGGAAGGATTTGCAAGGCTATGGAGAGGCACAAATGCAGGGTTAGCCCTCGCTGTTCCAACAGTGGGAATTTATCTACCGTGCTATGATGTGTTTCGCAATCAGTTAGAGGAATTCACTGCCCATAATGCACCAAGCATGACAGCTTATGTCCCACTAGTTGCCGGCTCTTTGGCACGCTCATTAGCTTGTGTAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTCAAAGTGATACAAAATGGCGGGAAGCCTCCTGGTGTTTTGAAGACTTTATTTGGTGTCGTCTCTCATGTCAAGACGACAAGTCATGTGCAGAGCAACTTGCAAGGTTATCGCGTCCTGTGGACCGGTATGGGAGCACAGCTTGCTCGTGATGTTCCCTTCTCAGGAATCTGTTGGGCAACCCTTGAGCCATTCAGGAGAAAACTTCTTGGTCTGGTGGGTGATGAAGCCAGCGCACTCAATATCCTTGGGGCAAATTTTTCTGCTGCTTTTGTTGCAGGAAGCCTTGCTGCTGCAGCTACATGTCCGTTGGATGTTGCAAAAACCCGAAGGCAGATAGAGAATGATCCAGTCAGGGCAATGAAAATGACAACACGGCAAACACTAATGGAGATTTGGAGGGGTGGAGGTTTGAAGGGATTGTTCACGGGAGTTGGCCCTCGTGTTGGCCGCGCAGGCCCTTCTGTTGGGATTGTGGTTTCCTTCTACGAAGTTGTGAAGTATGTTCTCCATCAGCGGTATGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

383

Amino Acids

41.05

Weight (kDa)

9.3

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	50, 729, 1068
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	7 cut(s)	48, 107, 110, 260, 636, 1066, 1132
AclWI	GGATC	2 cut(s)	270, 956
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	4 cut(s)	297, 447, 491, 871
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	443, 779, 1061, 1082
AflIII	ACRYGT	1 cut(s)	917
AgeI	ACCGGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	302, 315, 590, 619, 658, 1030
AhdI	GACNNNNNGTC	1 cut(s)	696
AhlI	ACTAGT	1 cut(s)	535
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	9 cut(s)	55, 98, 176, 185, 524, 566, 757, 914, 1142
AluI	AGCT	9 cut(s)	55, 98, 176, 185, 524, 566, 757, 914, 1142
Alw21I	GWGCWC	2 cut(s)	12, 754
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	270, 956
Ama87I	CYCGRG	1 cut(s)	288
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	4 cut(s)	242, 1051, 1063, 1072
ApeKI	GCWGC	8 cut(s)	52, 116, 182, 881, 905, 908, 911, 1139
ApoI	RAATTY	4 cut(s)	297, 447, 491, 871
AsiGI	ACCGGT	1 cut(s)	740
AspLEI	GCGC	3 cut(s)	52, 851, 1070
AspS9I	GGNCC	4 cut(s)	242, 738, 1052, 1073
AsuHPI	GGTGA	2 cut(s)	267, 848
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	738
BauI	CACGAG	2 cut(s)	762, 1056
BbsI	GAAGAC	2 cut(s)	352, 665
Bbv12I	GWGCWC	2 cut(s)	12, 754
BbvI	GCAGC	7 cut(s)	64, 128, 194, 868, 892, 895, 923
BccI	CCATC	4 cut(s)	23, 223, 286, 1134
BceAI	ACGGC	1 cut(s)	1007
BcgI	CGANNNNNNTGC	4 cut(s)	108, 142, 707, 741
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	682
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	2 cut(s)	536, 597
BfmI	CTRYAG	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	1071
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	1 cut(s)	738
BmeRI	GACNNNNNGTC	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	4 cut(s)	242, 738, 1052, 1073
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	352, 665
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	862
BsaWI	WCCGGW	2 cut(s)	325, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	443, 779, 1061, 1082
Bse118I	RCCGGY	2 cut(s)	542, 740
Bse1I	ACTGG	2 cut(s)	77, 965
Bse3DI	GCAATG	1 cut(s)	981
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	862
BseGI	GGATG	5 cut(s)	10, 202, 234, 361, 934
BseLI	CCNNNNNNNGG	4 cut(s)	443, 779, 1061, 1082
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	3 cut(s)	27, 191, 792
BseNI	ACTGG	2 cut(s)	77, 965
BseXI	GCAGC	7 cut(s)	64, 128, 194, 868, 892, 895, 923
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	3 cut(s)	50, 729, 1068
BshFI	GGCC	4 cut(s)	244, 1053, 1065, 1074
BshTI	ACCGGT	1 cut(s)	740
BsiHKAI	GWGCWC	2 cut(s)	12, 754
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	326, 543, 741
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	4 cut(s)	443, 779, 1061, 1082
BsmAI	GTCTC	1 cut(s)	682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	4 cut(s)	244, 1053, 1065, 1074
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	12, 754
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	262, 961
BspACI	CCGC	7 cut(s)	48, 107, 110, 260, 636, 1066, 1132
BspANI	GGCC	4 cut(s)	244, 1053, 1065, 1074
BspCNI	CTCAG	3 cut(s)	28, 190, 791
BspEI	TCCGGA	1 cut(s)	325
BspFNI	CGCG	3 cut(s)	50, 729, 1068
BspHI	TCATGA	1 cut(s)	1145
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	2 cut(s)	270, 956
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	2 cut(s)	542, 740
BsrI	ACTGG	2 cut(s)	77, 965
BssAI	RCCGGY	2 cut(s)	542, 740
BssECI	CCNNGG	1 cut(s)	862
BssMI	GATC	2 cut(s)	262, 961
BssSI	CACGAG	2 cut(s)	762, 1056
BssT1I	CCWWGG	1 cut(s)	862
Bst2BI	CACGAG	2 cut(s)	762, 1056
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	3 cut(s)	310, 442, 459
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	9 cut(s)	96, 174, 544, 556, 608, 612, 759, 847, 1072
BstDEI	CTNAG	5 cut(s)	36, 177, 209, 266, 778
BstF5I	GGATG	5 cut(s)	10, 202, 234, 361, 934
BstFNI	CGCG	3 cut(s)	50, 729, 1068
BstHHI	GCGC	3 cut(s)	52, 851, 1070
BstKTI	GATC	2 cut(s)	265, 964
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	2 cut(s)	262, 961
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	2 cut(s)	610, 921
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	3 cut(s)	50, 729, 1068
BstV1I	GCAGC	7 cut(s)	64, 128, 194, 868, 892, 895, 923
BstV2I	GAAGAC	2 cut(s)	352, 665
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	244, 1053, 1065, 1074
BtsCI	GGATG	5 cut(s)	10, 202, 234, 361, 934
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	306, 447, 495
Cac8I	GCNNGC	9 cut(s)	96, 174, 544, 556, 608, 612, 759, 847, 1072
CciI	TCATGA	1 cut(s)	1145
CfoI	GCGC	3 cut(s)	52, 851, 1070
Cfr10I	RCCGGY	2 cut(s)	542, 740
Cfr13I	GGNCC	4 cut(s)	242, 738, 1052, 1073
CseI	GACGC	2 cut(s)	29, 718
Csp6I	GTAC	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	740
CviAII	CATG	8 cut(s)	250, 282, 517, 607, 683, 701, 918, 1146
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	5 cut(s)	36, 177, 209, 266, 778
DpnI	GATC	2 cut(s)	264, 963
DpnII	GATC	2 cut(s)	262, 961
DriI	GACNNNNNGTC	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	1063
Eam1105I	GACNNNNNGTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoRI	GAATTC	2 cut(s)	297, 491
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	8 cut(s)	253, 285, 520, 610, 686, 704, 921, 1149
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	8 cut(s)	249, 281, 516, 606, 682, 700, 917, 1145
FauI	CCCGC	2 cut(s)	103, 629
FokI	GGATG	5 cut(s)	17, 189, 241, 368, 941
FspBI	CTAG	2 cut(s)	536, 597
GlaI	GCGC	3 cut(s)	51, 850, 1069
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	244, 1053, 1065, 1074
HapII	CCGG	3 cut(s)	326, 543, 741
HgaI	GACGC	2 cut(s)	29, 718
HhaI	GCGC	3 cut(s)	52, 851, 1070
Hin1II	CATG	8 cut(s)	253, 285, 520, 610, 686, 704, 921, 1149
Hin6I	GCGC	3 cut(s)	50, 849, 1068
HinP1I	GCGC	3 cut(s)	50, 849, 1068
HinfI	GANTC	1 cut(s)	783
HpaII	CCGG	3 cut(s)	326, 543, 741
HphI	GGTGA	2 cut(s)	267, 848
Hpy166II	GTNNAC	3 cut(s)	275, 738, 1041
Hpy188I	TCNGA	2 cut(s)	70, 228
Hpy188III	TCNNGA	6 cut(s)	326, 688, 764, 780, 811, 1146
Hpy8I	GTNNAC	3 cut(s)	275, 738, 1041
HpyAV	CCTTC	6 cut(s)	377, 784, 939, 1024, 1086, 1108
HpyCH4III	ACNGT	3 cut(s)	310, 442, 459
HpyCH4IV	ACGT	1 cut(s)	65
HpyF3I	CTNAG	5 cut(s)	36, 177, 209, 266, 778
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	8 cut(s)	253, 285, 520, 610, 686, 704, 921, 1149
HspAI	GCGC	3 cut(s)	50, 849, 1068
Kpn2I	TCCGGA	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	262, 961
LmnI	GCTCC	2 cut(s)	14, 749
Lsp1109I	GCAGC	7 cut(s)	64, 128, 194, 868, 892, 895, 923
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	536, 597
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	2 cut(s)	264, 963
MboI	GATC	2 cut(s)	262, 961
MboII	GAAGA	2 cut(s)	352, 670
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	12, 754
MluCI	AATT	6 cut(s)	77, 297, 372, 447, 491, 871
MmeI	TCCRAC	4 cut(s)	93, 206, 461, 906
MnlI	CCTC	8 cut(s)	333, 398, 437, 481, 654, 1008, 1016, 1065
MroI	TCCGGA	1 cut(s)	325
MroNI	GCCGGC	1 cut(s)	542
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	185, 1132
MspI	CCGG	3 cut(s)	326, 543, 741
MspR9I	CCNGG	1 cut(s)	648
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	648
MvnI	CGCG	3 cut(s)	50, 729, 1068
NaeI	GCCGGC	1 cut(s)	544
NdeII	GATC	2 cut(s)	262, 961
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	8 cut(s)	253, 285, 520, 610, 686, 704, 921, 1149
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	2 cut(s)	83, 115
NspI	RCATGY	2 cut(s)	610, 921
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	1145
PciI	ACATGT	1 cut(s)	917
PctI	GAATGC	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	783
PinAI	ACCGGT	1 cut(s)	740
PscI	ACATGT	1 cut(s)	917
Psp6I	CCWGG	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	4 cut(s)	242, 738, 1052, 1073
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	262, 961
Sau96I	GGNCC	4 cut(s)	242, 738, 1052, 1073
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	2 cut(s)	12, 754
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	909
SfiI	GGCCNNNNNGGCC	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
SpeI	ACTAGT	1 cut(s)	535
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	6 cut(s)	77, 297, 372, 447, 491, 871
SsiI	CCGC	7 cut(s)	48, 107, 110, 260, 636, 1066, 1132
SspMI	CTAG	2 cut(s)	536, 597
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	3 cut(s)	310, 442, 459
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	27
TasI	AATT	6 cut(s)	77, 297, 372, 447, 491, 871
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	3 cut(s)	50, 110, 1068
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	313, 447, 502
TseI	GCWGC	8 cut(s)	52, 116, 182, 881, 905, 908, 911, 1139
TspDTI	ATGAA	3 cut(s)	855, 992, 1134
TspGWI	ACGGA	2 cut(s)	27, 912
TspRI	CASTG	3 cut(s)	313, 447, 502
VpaK11BI	GGWCC	1 cut(s)	738
XapI	RAATTY	4 cut(s)	297, 447, 491, 871
XceI	RCATGY	2 cut(s)	610, 921
XspI	CTAG	2 cut(s)	536, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.