Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Forward (+)

20109351 .. 20112608

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22560.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGATCAGAGAGAGCGCGGCGAATAAGATGGTGGAGTTGGAGCGAGCGCAGAATCCATGGATGAGCACGGAGCAAACGCAGTCGGTTGGGGCGGATTTCTCTGCTGCGCAGCCGCCCAGCACGTCGGACTGGCAATTGGGGGTCACCGAGCGAGCTTTCTCGGCGGCGGGGGCCGCATTTTTATCCGCGATTATCGTTAATCCGCTTGATGTTGTAAAGACTAGGTTGCAAGCTCAGGCAGCTGGGGTTCCTTACTCACATCCGCTAAGTAATGTCATTAGTCGGATGTCATATTTCGGGCCAAGCATGATGTTTGCGGATCTAAGGTGTTCGCCATCATGCACGCGTGCTGGAATTCAAGGCACTGTTTCAATATGCCCTCCAGATTGCTTTCAGTACAAAGGCACATTGGATGTCTTCTACAAAATCATTAGACAGGAAGGATTTGCAAGGCTATGGAGAGGCACAAATGCAGGGTTAGCCCTTGCTATTCCAACAGTGGGAATTTACCTACCATGCTATGATGTGTTTCGCAACCGATTAGAGGAATTCACTTCTCATAATGCACCAAGTACAACAGCTTATGTCCCGCTAGTTGCCGGCTCTTTGGCACGCTCGTTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTCAAAGTGATACAAAATGGTGGGAAGCCTCCTGGTGTTTTGAAGACTTTATTTGGTGTCATCTCTCATGTCAAGACCACAAGTAATGTGCAGAGCAACTTGCAAGGTTATCGTGTCCTGTGGACCGGTATGGGAGCACAACTTGCTCGTGATGTTCCCTTCTCAGGAATTTGTTGGGCAACCCTTGAGCCACTCAGGAGAAAACTTCTTGGTCTGGTGGGAGATGAAGCCAGCGCACTCAATATCCTTGGGGCAAATTTTTCTGCTGCTTTTGTTGCAGGAAGCCTTGCTGCTGCAGCTACATGTCCGTTGGATGTTGCAAAAACCCGAAGGCAGATAGAGAACGATCCAATCAGGGCAATGAAAATGACAACGCGGCAAACACTTCTGGAGATTTGGAGGGGTGGAGGTTTGAAGGGATTGTTCACAGGAGTTGGCCCTCGTGTTGCCCGCGCTGGCCCGTCTGTTGGGATTGTGGTTTCCTTTTACGAAGTTGTGAAGTACGTTCTCCATCAGCGGTACGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

402

Amino Acids

43.3

Weight (kDa)

9.57

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	108
AccII	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
AclWI	GGATC	2 cut(s)	327, 1013
AcsI	RAATTY	5 cut(s)	354, 504, 548, 840, 928
AfaI	GTAC	4 cut(s)	398, 574, 1175, 1193
AfiI	CCNNNNNNNGG	4 cut(s)	500, 544, 836, 1139
AflIII	ACRYGT	2 cut(s)	344, 974
AgeI	ACCGGT	1 cut(s)	797
AgsI	TTSAA	6 cut(s)	359, 372, 647, 676, 715, 1087
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	7 cut(s)	155, 233, 242, 581, 623, 971, 1199
AluI	AGCT	7 cut(s)	155, 233, 242, 581, 623, 971, 1199
Alw21I	GWGCWC	2 cut(s)	68, 811
AlwI	GGATC	2 cut(s)	327, 1013
AoxI	GGCC	4 cut(s)	171, 299, 1108, 1129
ApeKI	GCWGC	8 cut(s)	104, 109, 239, 938, 962, 965, 968, 1196
ApoI	RAATTY	5 cut(s)	354, 504, 548, 840, 928
AsiGI	ACCGGT	1 cut(s)	797
AspLEI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
AspS9I	GGNCC	5 cut(s)	171, 299, 795, 1109, 1130
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	795
BauI	CACGAG	2 cut(s)	819, 1113
BbsI	GAAGAC	2 cut(s)	409, 722
Bbv12I	GWGCWC	2 cut(s)	68, 811
BbvI	GCAGC	7 cut(s)	91, 121, 251, 925, 949, 952, 980
BccI	CCATC	3 cut(s)	22, 343, 1191
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	222, 593, 654
BfmI	CTRYAG	1 cut(s)	966
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	1 cut(s)	795
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	5 cut(s)	171, 299, 795, 1109, 1130
BmiI	GGNNCC	2 cut(s)	172, 249
BmrFI	CCNGG	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	409, 722
BpmI	CTGGAG	2 cut(s)	366, 1082
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	878
BsaJI	CCNNGG	2 cut(s)	56, 919
BsaWI	WCCGGW	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	4 cut(s)	500, 544, 836, 1139
Bse118I	RCCGGY	2 cut(s)	599, 797
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	56, 919
BseGI	GGATG	5 cut(s)	66, 259, 291, 418, 991
BseLI	CCNNNNNNNGG	4 cut(s)	500, 544, 836, 1139
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	3 cut(s)	248, 849, 880
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	7 cut(s)	91, 121, 251, 925, 949, 952, 980
BseYI	CCCAGC	2 cut(s)	116, 242
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
BshFI	GGCC	4 cut(s)	173, 301, 1110, 1131
BshTI	ACCGGT	1 cut(s)	797
BsiHKAI	GWGCWC	2 cut(s)	68, 811
BsiSI	CCGG	2 cut(s)	600, 798
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	4 cut(s)	500, 544, 836, 1139
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	173, 301, 1110, 1131
Bsp1286I	GDGCHC	2 cut(s)	68, 811
Bsp143I	GATC	3 cut(s)	3, 319, 1018
Bsp19I	CCATGG	1 cut(s)	56
BspANI	GGCC	4 cut(s)	173, 301, 1110, 1131
BspCNI	CTCAG	3 cut(s)	247, 848, 879
BspFNI	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
BspHI	TCATGA	1 cut(s)	1202
BspLI	GGNNCC	2 cut(s)	172, 249
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	2 cut(s)	327, 1013
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	2 cut(s)	599, 797
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	2 cut(s)	599, 797
BssECI	CCNNGG	2 cut(s)	56, 919
BssMI	GATC	3 cut(s)	3, 319, 1018
BssSI	CACGAG	2 cut(s)	819, 1113
BssT1I	CCWWGG	2 cut(s)	56, 919
Bst2BI	CACGAG	2 cut(s)	819, 1113
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	367, 499
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstDEI	CTNAG	5 cut(s)	234, 266, 323, 835, 866
BstDSI	CCRYGG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	5 cut(s)	66, 259, 291, 418, 991
BstFNI	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
BstHHI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
BstKTI	GATC	3 cut(s)	6, 322, 1021
BstMBI	GATC	3 cut(s)	3, 319, 1018
BstMWI	GCNNNNNNNGC	8 cut(s)	161, 170, 173, 239, 479, 815, 947, 968
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	2 cut(s)	667, 978
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	966
BstUI	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
BstV1I	GCAGC	7 cut(s)	91, 121, 251, 925, 949, 952, 980
BstV2I	GAAGAC	2 cut(s)	409, 722
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	173, 301, 1110, 1131
BtgI	CCRYGG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	5 cut(s)	66, 259, 291, 418, 991
BtsIMutI	CAGTG	2 cut(s)	363, 504
CciI	TCATGA	1 cut(s)	1202
CfoI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
Cfr10I	RCCGGY	2 cut(s)	599, 797
Cfr13I	GGNCC	5 cut(s)	171, 299, 795, 1109, 1130
Csp6I	GTAC	4 cut(s)	397, 573, 1174, 1192
CspAI	ACCGGT	1 cut(s)	797
CviAII	CATG	8 cut(s)	57, 307, 339, 516, 664, 740, 975, 1203
CviQI	GTAC	4 cut(s)	397, 573, 1174, 1192
DdeI	CTNAG	5 cut(s)	234, 266, 323, 835, 866
DpnI	GATC	3 cut(s)	5, 321, 1020
DpnII	GATC	3 cut(s)	3, 319, 1018
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	56, 919
Eco47I	GGWCC	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	354, 548
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	56, 919
ErhI	CCWWGG	2 cut(s)	56, 919
FaeI	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	8 cut(s)	56, 306, 338, 515, 663, 739, 974, 1202
FauI	CCCGC	3 cut(s)	160, 597, 1130
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	5 cut(s)	73, 246, 298, 425, 998
FspBI	CTAG	3 cut(s)	222, 593, 654
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	5 cut(s)	16, 48, 108, 907, 1126
GsaI	CCCAGC	2 cut(s)	120, 246
GsuI	CTGGAG	2 cut(s)	366, 1082
HaeIII	GGCC	4 cut(s)	173, 301, 1110, 1131
HapII	CCGG	2 cut(s)	600, 798
HhaI	GCGC	5 cut(s)	17, 49, 109, 908, 1127
Hin1II	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
Hin6I	GCGC	5 cut(s)	15, 47, 107, 906, 1125
HinP1I	GCGC	5 cut(s)	15, 47, 107, 906, 1125
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	600, 798
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	795, 1098
Hpy188I	TCNGA	3 cut(s)	8, 127, 285
Hpy188III	TCNNGA	7 cut(s)	383, 745, 821, 837, 868, 1061, 1203
Hpy8I	GTNNAC	2 cut(s)	795, 1098
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	434, 841, 996, 1081
HpyCH4III	ACNGT	2 cut(s)	367, 499
HpyCH4IV	ACGT	2 cut(s)	122, 1176
HpyF10VI	GCNNNNNNNGC	8 cut(s)	161, 170, 173, 239, 479, 815, 947, 968
HpyF3I	CTNAG	5 cut(s)	234, 266, 323, 835, 866
HpySE526I	ACGT	2 cut(s)	122, 1176
Hsp92II	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
HspAI	GCGC	5 cut(s)	15, 47, 107, 906, 1125
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 319, 1018
LmnI	GCTCC	3 cut(s)	40, 70, 806
Lsp1109I	GCAGC	7 cut(s)	91, 121, 251, 925, 949, 952, 980
MaeI	CTAG	3 cut(s)	222, 593, 654
MaeII	ACGT	2 cut(s)	122, 1176
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	5, 321, 1020
MboI	GATC	3 cut(s)	3, 319, 1018
MboII	GAAGA	2 cut(s)	409, 727
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	68, 811
MluCI	AATT	6 cut(s)	134, 354, 504, 548, 840, 928
MluI	ACGCGT	1 cut(s)	344
MmeI	TCCRAC	5 cut(s)	18, 105, 263, 518, 963
MnlI	CCTC	7 cut(s)	390, 455, 538, 711, 1065, 1073, 1122
MroNI	GCCGGC	1 cut(s)	599
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	242, 1189
MspI	CCGG	2 cut(s)	600, 798
MspR9I	CCNGG	1 cut(s)	705
MunI	CAATTG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	5 cut(s)	17, 188, 346, 1048, 1125
MwoI	GCNNNNNNNGC	8 cut(s)	161, 170, 173, 239, 479, 815, 947, 968
NaeI	GCCGGC	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	3, 319, 1018
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	8 cut(s)	60, 310, 342, 519, 667, 743, 978, 1206
NlaIV	GGNNCC	2 cut(s)	172, 249
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	108
NspI	RCATGY	2 cut(s)	667, 978
PaeI	GCATGC	1 cut(s)	667
PagI	TCATGA	1 cut(s)	1202
PciI	ACATGT	1 cut(s)	974
PctI	GAATGC	1 cut(s)	671
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	797
PscI	ACATGT	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	116, 242
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	172, 249
PspPI	GGNCC	5 cut(s)	171, 299, 795, 1109, 1130
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	398, 574, 1175, 1193
RsaNI	GTAC	4 cut(s)	397, 573, 1174, 1192
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	3, 319, 1018
Sau96I	GGNCC	5 cut(s)	171, 299, 795, 1109, 1130
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	2 cut(s)	68, 811
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	6 cut(s)	134, 354, 504, 548, 840, 928
SspMI	CTAG	3 cut(s)	222, 593, 654
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	56, 919
TaaI	ACNGT	2 cut(s)	367, 499
TaiI	ACGT	2 cut(s)	125, 1179
TasI	AATT	6 cut(s)	134, 354, 504, 548, 840, 928
TatI	WGTACW	2 cut(s)	396, 572
TauI	GCSGC	5 cut(s)	20, 115, 167, 176, 1051
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	370, 504
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	8 cut(s)	104, 109, 239, 938, 962, 965, 968, 1196
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	912, 1049, 1191
TspGWI	ACGGA	2 cut(s)	83, 969
TspRI	CASTG	2 cut(s)	370, 504
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	5 cut(s)	354, 504, 548, 840, 928
XceI	RCATGY	2 cut(s)	667, 978
XspI	CTAG	3 cut(s)	222, 593, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.