RLG00000026335

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
2247844 .. 2251128
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026335

Sequence Viewer

Length: 1254 bp
ATGGTGGAGTTGGAGAGGGCGCAGAATCCTTGGGTGAGTAGTAGTGACGAGCAGCAAATCGACCGAGTTGAAATCGACGGTAGAGATTTGTCCATCATGCCGGAGCTGTCGGTTTTGGACAGAGGCGACGCGGGATTCGCGAGGCCGGACGGCGAGAGGTGTAAAACGACGTCGGATTGGAAGCTAGGGGTTGCGGAGCGAGCTTTCTCGGCCGCCGGCGCCGCGTTTTTGTCTGCCATTATTGTTAATCCACTTGATGTGGCCAAGACGAGGTTGCAAGCTCAGGCAGCTGGTGTGCCTTACTCGCATCCGCTAAGTAATATCACGAGTCGCATGGCTTTTTTCGGCCCTACCATGCTGTTTGCAGATCTAAGGTGTTCACCATCATGCACACGTGCTGGAATTCATGGTACTGTATCAATATGCCCACCAGATTGTTTTCAGTACAAAGGCACACTGGATGTTTTCTACAAAATCATTCGACAGGAAGGGTTTGCAAGGTTATGGAGAGGCACAAATGCAGGATTGGCACTGGCTATTCCAACAGTGGGAATCTATCTACCATGCTATGACATATTTCGCAACTGGTTAGAAGAATTCACTGCCCGTAATGCTCCCAGCACGAGTATATATGTTCCTTTAGTTGCTGGCTCTTTGGCACGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTTAAAGTGATACAAAATGGTGCAAAGCCTCCTGGTGTTTTGAGGACTCTATTGGACGTTGTCTCTCATGTCAAGACCACAAGTAATGCTGAAAGCAACTTAAGAGGCTATCGTGTCCTCTGGACCGGCATGGGAGCACAACTTGCTCGTGATGTTCCCTACTCTGCAATCTGTTGGTCGACTCTCGAGCCAATCAGAAGAAGACTTCTTAATCTTGTGGGTGATGAAGCAAATGCAGTCAGTATCTTTGGGGCAAATTTTTCTGCTGGTTTTGTTGCAGGAACCATAGCGGCTGCAGCTACATGTCCATTGGATGTTGCAAAGACCCGAAGACAGATAGAGAACGATCCAGTCAGGCAAATGAAAATGACGACAAGGCAAACGCTAATGGAGGTTTGGAGGGGTGGAGGACTAAAGGGACTATTCACAGGGGTTGGTCCTCGTGTTGGTCGTGCAGGCCCTTCGGTAGGGATTGTTGTTTCCTTCTATGAAGTCGTGAAGTATGCTCTACATCAACGGTATGCAACTTCATGA

Protein Analysis

418

Amino Acids

45.45

Weight (kDa)

9.24

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 150 - 198 1.5e-09 Mitochondrial carrier protein
Mito_carr PF00153 209 - 310 5.7e-12 Mitochondrial carrier protein
Mito_carr PF00153 323 - 412 3.8e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 899
AccII CGCG 3 cut(s) 131, 140, 224
AciI CCGC 6 cut(s) 131, 194, 213, 222, 311, 1010
AclWI GGATC 1 cut(s) 1061
AcoI YGGCCR 2 cut(s) 210, 261
AcsI RAATTY 3 cut(s) 402, 596, 976
AcvI CACGTG 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 170, 219
AfaI GTAC 2 cut(s) 412, 446
AfiI CCNNNNNNNGG 4 cut(s) 270, 548, 1166, 1187
AflII CTTAAG 1 cut(s) 820
AflIII ACRYGT 2 cut(s) 392, 1022
AgsI TTSAA 2 cut(s) 71, 695
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 7 cut(s) 106, 184, 203, 281, 290, 671, 1019
AluI AGCT 7 cut(s) 106, 184, 203, 281, 290, 671, 1019
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 1 cut(s) 1061
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 5 cut(s) 143, 210, 261, 346, 1177
ApeKI GCWGC 4 cut(s) 52, 287, 1013, 1016
ApoI RAATTY 3 cut(s) 402, 596, 976
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 2 cut(s) 22, 221
AspS9I GGNCC 4 cut(s) 347, 843, 1157, 1178
AsuHPI GGTGA 3 cut(s) 46, 372, 953
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 2 cut(s) 843, 1157
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 218
BauI CACGAG 4 cut(s) 325, 622, 867, 1161
BbrPI CACGTG 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 928, 1057
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 4 cut(s) 64, 299, 1000, 1028
BccI CCATC 2 cut(s) 101, 391
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 1164, 1198
BciT130I CCWGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 2 cut(s) 185, 702
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 820
BglII AGATCT 1 cut(s) 367
BisI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
BlsI GCNGC 7 cut(s) 54, 214, 223, 289, 1012, 1015, 1018
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 843, 1157
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 4 cut(s) 347, 843, 1157, 1178
BmiI GGNNCC 2 cut(s) 220, 1003
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 928, 1057
Bpu10I CCTNAGC 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 170, 219
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 548, 1166, 1187
Bse118I RCCGGY 2 cut(s) 215, 845
Bse1I ACTGG 4 cut(s) 462, 537, 590, 1070
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 307, 466, 1039
BseLI CCNNNNNNNGG 4 cut(s) 270, 548, 1166, 1187
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 4 cut(s) 462, 537, 590, 1070
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 64, 299, 1000, 1028
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 1194
Bsh1236I CGCG 3 cut(s) 131, 140, 224
Bsh1285I CGRYCG 2 cut(s) 64, 213
BshFI GGCC 5 cut(s) 145, 212, 263, 348, 1179
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 2 cut(s) 64, 213
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 4 cut(s) 101, 146, 216, 846
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 4 cut(s) 270, 548, 1166, 1187
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 1152
BsnI GGCC 5 cut(s) 145, 212, 263, 348, 1179
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 859
Bsp143I GATC 2 cut(s) 367, 1066
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 6 cut(s) 131, 194, 213, 222, 311, 1010
BspANI GGCC 5 cut(s) 145, 212, 263, 348, 1179
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 3 cut(s) 131, 140, 224
BspHI TCATGA 1 cut(s) 1250
BspLI GGNNCC 2 cut(s) 220, 1003
BspMAI CTGCAG 1 cut(s) 1018
BspPI GGATC 1 cut(s) 1061
BspT107I GGYRCC 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 820
BsrFI RCCGGY 2 cut(s) 215, 845
BsrI ACTGG 4 cut(s) 462, 537, 590, 1070
BssAI RCCGGY 2 cut(s) 215, 845
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 367, 1066
BssNI GRCGYC 2 cut(s) 170, 219
BssSI CACGAG 4 cut(s) 325, 622, 867, 1161
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 4 cut(s) 325, 622, 867, 1161
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 4 cut(s) 80, 415, 547, 1239
BstACI GRCGYC 2 cut(s) 170, 219
BstAFI CTTAAG 1 cut(s) 820
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 8 cut(s) 201, 217, 279, 649, 661, 713, 717, 1177
BstDEI CTNAG 3 cut(s) 282, 314, 371
BstENI CCTNNNNNAGG 1 cut(s) 1185
BstF5I GGATG 3 cut(s) 307, 466, 1039
BstFNI CGCG 3 cut(s) 131, 140, 224
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 22, 221
BstKTI GATC 2 cut(s) 370, 1069
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 2 cut(s) 367, 1066
BstMCI CGRYCG 2 cut(s) 64, 213
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 715, 1026
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 1014
BstUI CGCG 3 cut(s) 131, 140, 224
BstV1I GCAGC 4 cut(s) 64, 299, 1000, 1028
BstV2I GAAGAC 2 cut(s) 928, 1057
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 5 cut(s) 145, 212, 263, 348, 1179
BtsCI GGATG 3 cut(s) 307, 466, 1039
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 4 cut(s) 455, 530, 552, 600
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 8 cut(s) 201, 217, 279, 649, 661, 713, 717, 1177
CciI TCATGA 1 cut(s) 1250
CfoI GCGC 2 cut(s) 22, 221
Cfr10I RCCGGY 2 cut(s) 215, 845
Cfr13I GGNCC 4 cut(s) 347, 843, 1157, 1178
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 411, 445
CviQI GTAC 2 cut(s) 411, 445
DdeI CTNAG 3 cut(s) 282, 314, 371
DinI GGCGCC 1 cut(s) 220
DpnI GATC 2 cut(s) 369, 1068
DpnII GATC 2 cut(s) 367, 1066
DraI TTTAAA 1 cut(s) 724
EaeI YGGCCR 2 cut(s) 210, 261
EagI CGGCCG 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 843, 1157
Eco52I CGGCCG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 905
EcoNI CCTNNNNNAGG 1 cut(s) 1185
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRI GAATTC 2 cut(s) 402, 596
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 29
FaqI GGGAC 1 cut(s) 1152
FauI CCCGC 1 cut(s) 124
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
FokI GGATG 3 cut(s) 294, 473, 1046
Fsp4HI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
FspBI CTAG 2 cut(s) 185, 702
GlaI GCGC 2 cut(s) 21, 220
GluI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
GsaI CCCAGC 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 5 cut(s) 145, 212, 263, 348, 1179
HapII CCGG 4 cut(s) 101, 146, 216, 846
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 22, 221
Hin1I GRCGYC 2 cut(s) 170, 219
Hin6I GCGC 2 cut(s) 20, 219
HinP1I GCGC 2 cut(s) 20, 219
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HinfI GANTC 6 cut(s) 25, 135, 328, 552, 766, 901
HpaII CCGG 4 cut(s) 101, 146, 216, 846
HphI GGTGA 3 cut(s) 46, 372, 953
Hpy166II GTNNAC 2 cut(s) 380, 900
Hpy188I TCNGA 2 cut(s) 175, 917
Hpy188III TCNNGA 8 cut(s) 139, 325, 793, 841, 869, 905, 1216, 1251
Hpy8I GTNNAC 2 cut(s) 380, 900
Hpy99I CGWCG 4 cut(s) 80, 131, 172, 175
HpyAV CCTTC 3 cut(s) 482, 1191, 1213
HpyCH4III ACNGT 4 cut(s) 80, 415, 547, 1239
HpyCH4IV ACGT 3 cut(s) 170, 394, 777
HpyF3I CTNAG 3 cut(s) 282, 314, 371
HpySE526I ACGT 3 cut(s) 170, 394, 777
Hsp92I GRCGYC 2 cut(s) 170, 219
HspAI GCGC 2 cut(s) 20, 219
KasI GGCGCC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 367, 1066
LmnI GCTCC 4 cut(s) 103, 196, 619, 854
Lsp1109I GCAGC 4 cut(s) 64, 299, 1000, 1028
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 185, 702
MaeII ACGT 3 cut(s) 170, 394, 777
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 369, 1068
MboI GATC 2 cut(s) 367, 1066
MboII GAAGA 4 cut(s) 605, 930, 933, 1062
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 859
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 402, 596, 976
MluNI TGGCCA 1 cut(s) 263
Mly113I GGCGCC 1 cut(s) 219
MlyI GAGTC 3 cut(s) 337, 760, 895
MmeI TCCRAC 2 cut(s) 153, 566
Mox20I TGGCCA 1 cut(s) 263
MreI CGCCGGCG 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 215
MscI TGGCCA 1 cut(s) 263
MseI TTAA 4 cut(s) 246, 723, 821, 930
MslI CAYNNNNRTG 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 4 cut(s) 101, 146, 216, 846
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 131, 140, 224
NaeI GCCGGC 1 cut(s) 217
NarI GGCGCC 1 cut(s) 219
NdeII GATC 2 cut(s) 367, 1066
NgoMIV GCCGGC 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 220, 1003
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 44
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 2 cut(s) 715, 1026
PaeI GCATGC 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 905
PagI TCATGA 1 cut(s) 1250
PciI ACATGT 1 cut(s) 1022
PcsI WCGNNNNNNNCGW 1 cut(s) 1168
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 3 cut(s) 25, 135, 552
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 7 cut(s) 54, 214, 223, 289, 1012, 1015, 1018
PleI GAGTC 3 cut(s) 336, 760, 895
PluTI GGCGCC 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
PpsI GAGTC 3 cut(s) 336, 760, 895
Ppu21I YACGTR 1 cut(s) 395
PscI ACATGT 1 cut(s) 1022
Psp6I CCWGG 1 cut(s) 751
PspCI CACGTG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 220, 1003
PspPI GGNCC 4 cut(s) 347, 843, 1157, 1178
PstI CTGCAG 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 290
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 2 cut(s) 412, 446
RsaNI GTAC 2 cut(s) 411, 445
RseI CAYNNNNRTG 1 cut(s) 385
SalI GTCGAC 1 cut(s) 898
SaqAI TTAA 4 cut(s) 246, 723, 821, 930
SatI GCNGC 7 cut(s) 53, 213, 222, 288, 1011, 1014, 1017
Sau3AI GATC 2 cut(s) 367, 1066
Sau96I GGNCC 4 cut(s) 347, 843, 1157, 1178
SchI GAGTC 3 cut(s) 337, 760, 895
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 1014
SfoI GGCGCC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 905
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 2 cut(s) 843, 1157
SlaI CTCGAG 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 820, 905
SmoI CTYRAG 2 cut(s) 820, 905
SphI GCATGC 1 cut(s) 715
Sse9I AATT 3 cut(s) 402, 596, 976
SsiI CCGC 6 cut(s) 131, 194, 213, 222, 311, 1010
SspDI GGCGCC 1 cut(s) 218
SspMI CTAG 2 cut(s) 185, 702
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 4 cut(s) 80, 415, 547, 1239
TaiI ACGT 3 cut(s) 173, 397, 780
TaqI TCGA 5 cut(s) 60, 75, 481, 899, 906
TaqII GACCGA 1 cut(s) 78
TasI AATT 3 cut(s) 402, 596, 976
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 215, 224, 1013
TfiI GAWTC 3 cut(s) 25, 135, 552
Tru1I TTAA 4 cut(s) 246, 723, 821, 930
Tru9I TTAA 4 cut(s) 246, 723, 821, 930
TscAI CASTG 4 cut(s) 462, 537, 552, 607
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 52, 287, 1013, 1016
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 395, 960, 1097, 1224, 1239
TspRI CASTG 4 cut(s) 462, 537, 552, 607
Tth111I GACNNNGTC 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 820
VpaK11BI GGWCC 2 cut(s) 843, 1157
XagI CCTNNNNNAGG 1 cut(s) 1185
XapI RAATTY 3 cut(s) 402, 596, 976
XceI RCATGY 2 cut(s) 715, 1026
XhoI CTCGAG 1 cut(s) 905
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 2 cut(s) 185, 702
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.