Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Reverse (-)

51944575 .. 51948846

Gene Structure 4272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0417000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4128 bp

ATGAGAATCCTTTATTGGAATGCACGCGGCATCGGCAACGACGACTCTCAGCGTGCCCTTGCTAATATGGTACGATCACAGAAAGCCCTCATTGTTTGTATTTCAGAGCCCTTTGTTAACTTTGCATCTATTCCTTTCTCTTTCTGGAGGTCCTTGGGCCTTAAACTTGTAACTACTAATAACCGGGGATGCCAAGCCCCCAACATGTGGTTCTTATGTCAGGAAGCTTTGAACACACAGGTCATTTTGAGCTCAGACCAACAGATTACTGTCTCCTGTTCCTATGAGGGAGTTCCTTGTATCTTTACGTCGGTTTACGCCAAAACTTCAGTTGGGGGTCGACGTCAGTTATGGCAGGAGCTAAACTACATTCACTCTTTGCATGGCCAGTGCCCATGGGTTGTCCTTGGTGATTTTAACTGTGTCTTGGGTGCACATGAAAAACGTGGGGGTCGTCCTCCAAACGCAACTTCCTGCATCGAGTTTAGTCAAACATGCACTTCATGTGGCCTTATTGATATTCCCACACAGGGCCTTAGCTACACCTGGTCTAATAAATTTACGGAAGTAAGGTTAGATCGCGCAATTGCCAACCTCCAGTGGATGAATGCTTGGAACCTGATGGACTGTTGTACTCTCACAAAAGCCACTTCTGACCACTGTCCCATCTTGGTATCTTGTTCAAAGTTGGGTTTTGTTCCGCGCCCTTCCTTCAAGTTCCAGACCATGTGGCTGCAAAAGCCAAATTTTTTAGAGCTTATTCGGACTTTCTGGGCCTCTCTACAATTCTTTGGTTGTCCACAGTTTATTCTGGCTTCCAAGTTGCGCTCTCTGAAATCCATGTTAAAATCATGGAGCAAGGATAATGTGGGGGATGTGCATGTTCAGGTGAATAACTCCCGCGCCGCTTTGGACGCAATTCAGTCCGAAATTTCAACTCATGGTCAAAATGCGGAGCGGACTGCATTAGAAACGGCAGCCCATGCCAAGTATCTTTTGGACTTGTCTCTACAAGCAACGTTGCTTAGGGACAAATCTAGAATCCGTTGGTTAAAAGATGGTGACAGGAACACTTCTTTTCTTCATAATATGATAAAGATTCGTCGCCTTCATAATTCCATATCCTCCCTCTTAGTCGATGACGTAGTGCTCACAGATCAACCTGCCATTGCTGCCCATATAGAACAACATTTCCAAGAGGCTTTCTCCTGTGATCCACGCATTACAAATACGGGCTTGGTTGAGAGAACCATCCCTTCCTTAGTCACTGATGAGGAAAACGCTTCCCTCCTTGCTATGCCATCTCCTGAAGAGGTCTTTGCAGCTGTCAGAAGCATGGATGGGAAGAGTGCTCCCGGCCCAGATGGCTTCAGTGGAGACTTCTTCACTTTCTGTTGGCCTGTAGTCGCAAATGATGTGGTTAGGGCAACTCAAAGTTTCTTTCATAATGGGTTCATTCTGCCTCACTTTAACTCGAACACCCTTATCTTTATACCAAAGGTACATGACTCAGAGACCATCTCTGACTTCCGCCCTATTGCACTTGCTAATTTTGTCTTTAAAATCATCACAAAGATTGTTGCAGATAGACTTGGTCCCATAGCTTCGCGGATCATCTCCCCCAACCAGAGCGCATTTATCAAAGGACGCTCCATCACTGACCCCATTGTTCTTACCTCTGAATGTATTAATTTGCTGGATCATAAATGCAAATATGGAAATGTGGCTATTAAGTTTGATGTTCGCAAAGCTTTTGACACCCTGGATTGGAACTTCTTGTTACGTGTCTTAAAAGCCTTCGGATTCAATGCGAACTTCGTGACTTATACCCATGCCATTCTGAAATCAGCTTATCTATCTGTTAATGTCAATGGGCAAGCCTATGGCTATTTCACATGCTCTAGAGGAGTCAGACAAGGTGATCCTTTATCGCCTTTACTTTTCTGCCTTGCTGAGGAGGTCCTAAGCCGAGGGTTTTCCTCTCTTATCTCCACAAACAAGATTAAAAGTATTGCAGCGCCGTCAGGCATCTCCCCGCCTTCTCATGTGCTCTTTGCAGATGATATTATGGTGTTCGTGCAAGGTAAACCTTCTCATCTGCGGAACCTTCTTTCTTTTATGGATGAGTATGCTTTGAATTCTGGCCAGGTTATAAACAAAACGAAGTCACATCTGTTCCTCGGGAAGCATGCTTTGTTGACACAACACAGAATTAGCCGGATATTGGGGATTCATGTGGACAATCTTCCCTTCACATATCTTGGAGTCCCAATTTTTACTGGACATCCGAAACCTGAGCACCTTGCTTCAATTGCGGACAAAGTGCGATGTAAGCTAAACTCTTGGAAAGGTAGGCAATTATCACAAGCAGGTAGAGTACAGCTCATTTCCTCAGTGATTCATGGCATTTTGATATACAGTTTTCAAGTTTATGAATGGCCCAAGGCCCTGCTAAAGAAAGTTCAAAGATGGATCAGGAACTTCTTTTGGAACGGGGACCCTCTCAAGGATGGCTCCGCCCTCATAGCCTGGAACACAGTCTGTACCCCAAAAGAGCAGGGGGGATTAGGACTAAAAAATATTTTCACTTTGAACAGGGCCTTGCTTCTCAAAAGATGTTGGGACGTTGCCTCTCGTGCGTCCACCTCTACCAACTTTCTGCACGATCGGTTCGTAAAAATTGGTCTGCAACCATACTCTTATTATAAAAAATCTTCGGTTTGGTTAGGTCTCAAGAAGCTCTGGCCAAGGTTGTCGGAAGGGGTTCAGTGGCTAGTTGGTAATGGCAATTCCATTAGATTTTGGCGTGACAATTGGTTGGGGGAAACCATTGCTTCTTCCCTCAATTATGTTCAAGAGGTCCAAAAGCTATTGAATGATAAAGTGTCTTGCTTCATTGCGAATGGGCGGTGGAACTTACCTTCAAGCTTCTGTCGCTCGTTGCCTACTCTTGCCCAGTCCATCCGCTCAATTGAGCTTCCAGAGGAGCCCTCCCCTGATCAGGTTATTTGGTCCGAAACGGCGTCAGGGTCACTGACATCCAGTGATGCTTACAACGCCTTGGATCCTCCTACGCCTGGCCCTTCATGGTGCAAGCACATTTGGCATGCTGCAATACAGCCTAGAAAGAGTGTCACTACCTGGAAAGTCTTGCATGGAAAAATTCAAACAGATGATTTTCTTCAGATACGGGGTACATGCCTTTGTTCTAGATGCCTCCTCTGTGGGACAAATTCTGAATCACGTATGCATCTCTTCCAGACTTGTGAGATCGCCACTTCATTATGGCATTGGCTTCACCATCTCTTCAGATTGCGGTTTCCCCCGGGTGCGTCGCTCCGTGATTTTTTCCTTGATAATTTGCTATCCTCCCTCGATTACTCCTCCAGGTTATTGTGGTACATAGCGGTTTGCAACCTCCTTTGGTGCATCTGGCAAGAAAGGAACAAAATAAAGTTTGATGAGGGCGCCTTTTGTCTAGCAAGATTTAAGCAGTTCTTCACCCTATCACTAAGGGAATCCGCAGGGTTGATATTTGCCTCATCCTCCCTGGCATCCACTGCAGCTCCCATTTTTGGCCTATTGGGCATCTCCCCCCTTCGCCCCATGGCACCTCGTTATATTCCAGTCACATGGACTCCCCCGCCAGAGAATTGGTTCAAAGCAAACTCAGATGGCTCTTTTCGTGATCCCAATCATGCTGGCTTCGGAGGCATTTTTAGAAATAGTGAGGCAGCTTTCTTAGGTGCCTTCTCTTGTAAAGCAATTGTGCCATGGGCCATTGACACTGAGTTATTGGCAGTAATGGCGGTTATTAAAGTGGCAAGTTATCGTAACTGGTTTCCTCTATGGTTAGAGACCGATTCAATGTTGGTTATGCACTACCTTAAAAACCCATCCAGGGTGCCTTGGCGTCTTCGGACTAGATGGAAAAACTGTGTTGCTTCGATTAGACAATTGCAAGTGCACATCTCCCATATCTATAGAGAGGGGAACCGCGTGGCCGACAAGCTGGCTAATTTTGGCGCCACAAATGACAATCCAACTTGGTGGGATTCAATTCCGCCTTTCCTGCTTAGCTCTTTTGGTCATGACTATTCAGCCCAGATAGACTACCGGTTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

1375

Amino Acids

155.24

Weight (kDa)

9.25

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	4 - 220	1.5e-08	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	502 - 758	3.2e-34	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1013 - 1096	2e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	1223 - 1341	1.7e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2153, 2706
AatII	GACGTC	1 cut(s)	346
Acc36I	ACCTGC	2 cut(s)	1171, 2360
AccB1I	GGYRCC	5 cut(s)	3467, 3610, 3746, 3904, 4025
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccBSI	CCGCTC	2 cut(s)	958, 2967
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
AclI	AACGTT	1 cut(s)	1019
AclWI	GGATC	8 cut(s)	1208, 1619, 1707, 1916, 2480, 3059, 3072, 3683
AcoI	YGGCCR	4 cut(s)	385, 2143, 2744, 4002
AcsI	RAATTY	6 cut(s)	557, 745, 930, 2137, 3162, 3232
AcuI	CTGAAG	5 cut(s)	312, 1329, 1354, 3167, 3292
AcyI	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
AfaI	GTAC	7 cut(s)	72, 634, 1503, 2379, 2545, 3196, 3401
AflIII	ACRYGT	2 cut(s)	204, 1783
AgeI	ACCGGT	1 cut(s)	4116
AjnI	CCWGG	9 cut(s)	545, 1761, 2145, 2528, 3076, 3140, 3386, 3549, 3899
AjuI	GAANNNNNNNTTGG	5 cut(s)	30, 194, 226, 454, 486
AloI	GAACNNNNNNTCC	2 cut(s)	1176, 1208
Alw21I	GWGCWC	7 cut(s)	254, 436, 1152, 1354, 2052, 2301, 3969
Alw26I	GTCTC	6 cut(s)	277, 1011, 1371, 1508, 2735, 3851
Alw44I	GTGCAC	2 cut(s)	432, 3965
AlwI	GGATC	8 cut(s)	1208, 1619, 1707, 1916, 2480, 3059, 3072, 3683
Ama87I	CYCGRG	2 cut(s)	2180, 3325
ApaLI	GTGCAC	2 cut(s)	432, 3965
ApeKI	GCWGC	8 cut(s)	733, 977, 1172, 1322, 2015, 3110, 3563, 3734
ApoI	RAATTY	6 cut(s)	557, 745, 930, 2137, 3162, 3232
AseI	ATTAAT	1 cut(s)	1689
AsiGI	ACCGGT	1 cut(s)	4116
Asp700I	GAANNNNTTC	2 cut(s)	2763, 3656
AspLEI	GCGC	8 cut(s)	584, 705, 828, 905, 1634, 2020, 3470, 4028
AsuC2I	CCSGG	4 cut(s)	185, 1356, 3326, 3327
AsuHPI	GGTGA	6 cut(s)	422, 901, 1073, 1931, 3290, 3493
AvaI	CYCGRG	2 cut(s)	2180, 3325
AvaII	GGWCC	6 cut(s)	150, 1595, 1960, 2497, 2860, 3012
BaeGI	GKGCMC	4 cut(s)	58, 395, 436, 3969
BalI	TGGCCA	3 cut(s)	387, 2145, 2746
BamHI	GGATCC	1 cut(s)	3064
BanI	GGYRCC	5 cut(s)	3467, 3610, 3746, 3904, 4025
BanII	GRGCYC	3 cut(s)	111, 254, 2991
BauI	CACGAG	1 cut(s)	2634
BbsI	GAAGAC	1 cut(s)	3908
Bbv12I	GWGCWC	7 cut(s)	254, 436, 1152, 1354, 2052, 2301, 3969
BbvCI	CCTCAGC	1 cut(s)	1953
BbvI	GCAGC	8 cut(s)	720, 989, 1159, 1334, 2027, 3097, 3575, 3746
BceAI	ACGGC	3 cut(s)	990, 2005, 3036
BciT130I	CCWGG	9 cut(s)	547, 1763, 2147, 2530, 3078, 3142, 3388, 3551, 3901
BclI	TGATCA	1 cut(s)	2998
BcnI	CCSGG	4 cut(s)	185, 1356, 3326, 3327
BcoDI	GTCTC	6 cut(s)	277, 1011, 1371, 1508, 2735, 3851
BfaI	CTAG	7 cut(s)	1038, 1902, 2774, 3123, 3210, 3479, 3924
BfmI	CTRYAG	3 cut(s)	1401, 3561, 3982
BfoI	RGCGCY	3 cut(s)	2021, 3471, 4029
BfuAI	ACCTGC	2 cut(s)	1171, 2360
BglI	GCCNNNNNGGC	2 cut(s)	1365, 3585
BlpI	GCTNAGC	1 cut(s)	4076
Bme18I	GGWCC	6 cut(s)	150, 1595, 1960, 2497, 2860, 3012
BmeT110I	CYCGRG	2 cut(s)	2180, 3325
BmrI	ACTGGG	1 cut(s)	2950
BmuI	ACTGGG	1 cut(s)	2950
BoxI	GACNNNNGTC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	3908
BplI	GAGNNNNNCTC	8 cut(s)	1190, 1222, 1505, 1537, 2367, 2399, 2975, 3007
BpmI	CTGGAG	3 cut(s)	166, 581, 3370
Bpu10I	CCTNAGC	5 cut(s)	536, 1025, 1953, 1964, 2295
Bpu1102I	GCTNAGC	1 cut(s)	4076
BpuEI	CTTGAG	2 cut(s)	2489, 2717
BpuMI	CCSGG	4 cut(s)	185, 1356, 3326, 3327
BsaAI	YACGTR	2 cut(s)	1784, 3245
BsaBI	GATNNNNATC	1 cut(s)	3693
BsaHI	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
BsaI	GGTCTC	3 cut(s)	1508, 2735, 3851
BsaWI	WCCGGW	1 cut(s)	4116
BsaXI	ACNNNNNCTCC	4 cut(s)	3550, 3580, 3622, 3652
Bse118I	RCCGGY	1 cut(s)	4116
Bse1I	ACTGG	7 cut(s)	388, 598, 2284, 2956, 3042, 3626, 3842
Bse3DI	GCAATG	3 cut(s)	1167, 2829, 2895
Bse8I	GATNNNNATC	1 cut(s)	3693
BseBI	CCWGG	9 cut(s)	547, 1763, 2147, 2530, 3078, 3142, 3388, 3551, 3901
BseJI	GATNNNNATC	1 cut(s)	3693
BseMI	GCAATG	3 cut(s)	1167, 2829, 2895
BseMII	CTCAG	8 cut(s)	62, 267, 1524, 1944, 2286, 2406, 3684, 3780
BseNI	ACTGG	7 cut(s)	388, 598, 2284, 2956, 3042, 3626, 3842
BseRI	GAGGAG	5 cut(s)	1920, 1970, 2999, 3209, 3373
BseSI	GKGCMC	4 cut(s)	58, 395, 436, 3969
BseXI	GCAGC	8 cut(s)	720, 989, 1159, 1334, 2027, 3097, 3575, 3746
BsgI	GTGCAG	1 cut(s)	2645
Bsh1236I	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
Bsh1285I	CGRYCG	1 cut(s)	2668
BshNI	GGYRCC	5 cut(s)	3467, 3610, 3746, 3904, 4025
BshTI	ACCGGT	1 cut(s)	4116
BsiEI	CGRYCG	1 cut(s)	2668
BsiHKAI	GWGCWC	7 cut(s)	254, 436, 1152, 1354, 2052, 2301, 3969
BsiHKCI	CYCGRG	2 cut(s)	2180, 3325
BsiSI	CCGG	5 cut(s)	184, 1356, 2218, 3326, 4117
BslFI	GGGAC	7 cut(s)	648, 1043, 1581, 2252, 2510, 2636, 3241
BsmAI	GTCTC	6 cut(s)	277, 1011, 1371, 1508, 2735, 3851
BsmFI	GGGAC	7 cut(s)	648, 1043, 1581, 2252, 2510, 2636, 3241
BsmI	GAATGC	2 cut(s)	25, 613
Bso31I	GGTCTC	3 cut(s)	1508, 2735, 3851
BsoBI	CYCGRG	2 cut(s)	2180, 3325
Bsp1720I	GCTNAGC	1 cut(s)	4076
Bsp19I	CCATGG	3 cut(s)	395, 3606, 3773
BspCNI	CTCAG	8 cut(s)	61, 266, 1523, 1945, 2287, 2405, 3683, 3781
BspFNI	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
BspHI	TCATGA	1 cut(s)	4090
BspMAI	CTGCAG	1 cut(s)	3565
BspMI	ACCTGC	2 cut(s)	1171, 2360
BspPI	GGATC	8 cut(s)	1208, 1619, 1707, 1916, 2480, 3059, 3072, 3683
BspT107I	GGYRCC	5 cut(s)	3467, 3610, 3746, 3904, 4025
BspTNI	GGTCTC	3 cut(s)	1508, 2735, 3851
BsrBI	CCGCTC	2 cut(s)	958, 2967
BsrDI	GCAATG	3 cut(s)	1167, 2829, 2895
BsrFI	RCCGGY	1 cut(s)	4116
BsrI	ACTGG	7 cut(s)	388, 598, 2284, 2956, 3042, 3626, 3842
BssAI	RCCGGY	1 cut(s)	4116
BssNI	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
BssSI	CACGAG	1 cut(s)	2634
BssT1I	CCWWGG	9 cut(s)	153, 395, 406, 2442, 2747, 3060, 3606, 3773, 3908
Bst2BI	CACGAG	1 cut(s)	2634
Bst2UI	CCWGG	9 cut(s)	547, 1763, 2147, 2530, 3078, 3142, 3388, 3551, 3901
Bst4CI	ACNGT	8 cut(s)	271, 422, 629, 662, 804, 2420, 2539, 3938
Bst6I	CTCTTC	4 cut(s)	1305, 1340, 3260, 3311
BstACI	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
BstAPI	GCANNNNNTGC	2 cut(s)	983, 3560
BstBAI	YACGTR	2 cut(s)	1784, 3245
BstC8I	GCNNGC	8 cut(s)	25, 54, 1878, 2190, 3095, 3108, 3703, 4014
BstDSI	CCRYGG	3 cut(s)	395, 3606, 3773
BstENI	CCTNNNNNAGG	1 cut(s)	1952
BstFNI	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
BstH2I	RGCGCY	3 cut(s)	2021, 3471, 4029
BstHHI	GCGC	8 cut(s)	584, 705, 828, 905, 1634, 2020, 3470, 4028
BstMAI	GTCTC	6 cut(s)	277, 1011, 1371, 1508, 2735, 3851
BstMCI	CGRYCG	1 cut(s)	2668
BstNI	CCWGG	9 cut(s)	547, 1763, 2147, 2530, 3078, 3142, 3388, 3551, 3901
BstNSI	RCATGY	7 cut(s)	208, 498, 884, 1899, 2192, 3110, 3201
BstPAI	GACNNNNGTC	1 cut(s)	660
BstSFI	CTRYAG	3 cut(s)	1401, 3561, 3982
BstSLI	GKGCMC	4 cut(s)	58, 395, 436, 3969
BstUI	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
BstV1I	GCAGC	8 cut(s)	720, 989, 1159, 1334, 2027, 3097, 3575, 3746
BstV2I	GAAGAC	1 cut(s)	3908
BstX2I	RGATCY	1 cut(s)	3064
BstXI	CCANNNNNNTGG	3 cut(s)	3633, 3654, 4050
BstYI	RGATCY	1 cut(s)	3064
BtgI	CCRYGG	3 cut(s)	395, 3606, 3773
BtgZI	GCGATG	1 cut(s)	2341
BtsI	GCAGTG	1 cut(s)	3558
BveI	ACCTGC	2 cut(s)	1171, 2360
Cac8I	GCNNGC	8 cut(s)	25, 54, 1878, 2190, 3095, 3108, 3703, 4014
CciI	TCATGA	1 cut(s)	4090
CfoI	GCGC	8 cut(s)	584, 705, 828, 905, 1634, 2020, 3470, 4028
Cfr10I	RCCGGY	1 cut(s)	4116
Cfr9I	CCCGGG	1 cut(s)	3325
CseI	GACGC	6 cut(s)	923, 1656, 2628, 3012, 3321, 3902
CsiI	ACCWGGT	1 cut(s)	545
Csp6I	GTAC	7 cut(s)	71, 633, 1502, 2378, 2544, 3195, 3400
CspAI	ACCGGT	1 cut(s)	4116
CspCI	CAANNNNNGTGG	2 cut(s)	1398, 1433
CviQI	GTAC	7 cut(s)	71, 633, 1502, 2378, 2544, 3195, 3400
DinI	GGCGCC	2 cut(s)	3469, 4027
DraI	TTTAAA	1 cut(s)	1561
EaeI	YGGCCR	4 cut(s)	385, 2143, 2744, 4002
Eam1104I	CTCTTC	4 cut(s)	1305, 1340, 3260, 3311
EarI	CTCTTC	4 cut(s)	1305, 1340, 3260, 3311
EciI	GGCGGA	3 cut(s)	1520, 2506, 4053
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	9 cut(s)	153, 395, 406, 2442, 2747, 3060, 3606, 3773, 3908
Eco24I	GRGCYC	3 cut(s)	111, 254, 2991
Eco31I	GGTCTC	3 cut(s)	1508, 2735, 3851
Eco47I	GGWCC	6 cut(s)	150, 1595, 1960, 2497, 2860, 3012
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	5 cut(s)	312, 1329, 1354, 3167, 3292
Eco88I	CYCGRG	2 cut(s)	2180, 3325
EcoICRI	GAGCTC	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	1952
EcoO109I	RGGNCCY	6 cut(s)	150, 532, 1960, 2446, 2497, 2598
EcoRI	GAATTC	1 cut(s)	2137
EcoRII	CCWGG	9 cut(s)	545, 1761, 2145, 2528, 3076, 3140, 3386, 3549, 3899
EcoT14I	CCWWGG	9 cut(s)	153, 395, 406, 2442, 2747, 3060, 3606, 3773, 3908
EcoT22I	ATGCAT	1 cut(s)	3252
EcoT38I	GRGCYC	3 cut(s)	111, 254, 2991
EgeI	GGCGCC	2 cut(s)	3469, 4027
EheI	GGCGCC	2 cut(s)	3469, 4027
ErhI	CCWWGG	9 cut(s)	153, 395, 406, 2442, 2747, 3060, 3606, 3773, 3908
FalI	AAGNNNNNCTT	2 cut(s)	3482, 3514
FaqI	GGGAC	7 cut(s)	648, 1043, 1581, 2252, 2510, 2636, 3241
FauI	CCCGC	3 cut(s)	908, 2043, 3651
FbaI	TGATCA	1 cut(s)	2998
FblI	GTMKAC	1 cut(s)	340
FriOI	GRGCYC	3 cut(s)	111, 254, 2991
FspBI	CTAG	7 cut(s)	1038, 1902, 2774, 3123, 3210, 3479, 3924
GlaI	GCGC	8 cut(s)	583, 704, 827, 904, 1633, 2019, 3469, 4027
GsuI	CTGGAG	3 cut(s)	166, 581, 3370
HaeII	RGCGCY	3 cut(s)	2021, 3471, 4029
HapII	CCGG	5 cut(s)	184, 1356, 2218, 3326, 4117
HgaI	GACGC	6 cut(s)	923, 1656, 2628, 3012, 3321, 3902
HhaI	GCGC	8 cut(s)	584, 705, 828, 905, 1634, 2020, 3470, 4028
Hin1I	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
Hin6I	GCGC	8 cut(s)	582, 703, 826, 903, 1632, 2018, 3468, 4026
HinP1I	GCGC	8 cut(s)	582, 703, 826, 903, 1632, 2018, 3468, 4026
HincII	GTYRAC	3 cut(s)	118, 341, 2199
HindII	GTYRAC	3 cut(s)	118, 341, 2199
HindIII	AAGCTT	3 cut(s)	225, 1749, 2926
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	5 cut(s)	184, 1356, 2218, 3326, 4117
HphI	GGTGA	6 cut(s)	422, 901, 1073, 1931, 3290, 3493
Hpy99I	CGWCG	5 cut(s)	44, 313, 345, 1107, 3337
HpyCH4III	ACNGT	8 cut(s)	271, 422, 629, 662, 804, 2420, 2539, 3938
HpyCH4IV	ACGT	8 cut(s)	308, 343, 445, 1019, 1143, 1783, 2625, 3244
HpySE526I	ACGT	8 cut(s)	308, 343, 445, 1019, 1143, 1783, 2625, 3244
Hsp92I	GRCGYC	5 cut(s)	343, 3023, 3468, 3913, 4026
HspAI	GCGC	8 cut(s)	582, 703, 826, 903, 1632, 2018, 3468, 4026
KasI	GGCGCC	2 cut(s)	3467, 4025
KflI	GGGWCCC	1 cut(s)	2497
Ksp22I	TGATCA	1 cut(s)	2998
KspAI	GTTAAC	1 cut(s)	118
LmnI	GCTCC	9 cut(s)	358, 855, 955, 1357, 1655, 2519, 2986, 3342, 3571
Lsp1109I	GCAGC	8 cut(s)	720, 989, 1159, 1334, 2027, 3097, 3575, 3746
MabI	ACCWGGT	1 cut(s)	545
MaeI	CTAG	7 cut(s)	1038, 1902, 2774, 3123, 3210, 3479, 3924
MaeII	ACGT	8 cut(s)	308, 343, 445, 1019, 1143, 1783, 2625, 3244
MbiI	CCGCTC	2 cut(s)	958, 2967
MfeI	CAATTG	6 cut(s)	585, 2310, 2812, 2970, 3765, 3956
MflI	RGATCY	1 cut(s)	3064
MlsI	TGGCCA	3 cut(s)	387, 2145, 2746
MluNI	TGGCCA	3 cut(s)	387, 2145, 2746
Mly113I	GGCGCC	2 cut(s)	3468, 4026
MlyI	GAGTC	5 cut(s)	38, 1502, 1917, 2274, 3631
MmeI	TCCRAC	2 cut(s)	2736, 4067
Mox20I	TGGCCA	3 cut(s)	387, 2145, 2746
Mph1103I	ATGCAT	1 cut(s)	3252
MroXI	GAANNNNTTC	2 cut(s)	2763, 3656
MscI	TGGCCA	3 cut(s)	387, 2145, 2746
Msp20I	TGGCCA	3 cut(s)	387, 2145, 2746
MspA1I	CMGCKG	1 cut(s)	1325
MspI	CCGG	5 cut(s)	184, 1356, 2218, 3326, 4117
MunI	CAATTG	6 cut(s)	585, 2310, 2812, 2970, 3765, 3956
Mva1269I	GAATGC	2 cut(s)	25, 613
MvaI	CCWGG	9 cut(s)	547, 1763, 2147, 2530, 3078, 3142, 3388, 3551, 3901
MvnI	CGCG	6 cut(s)	27, 582, 703, 903, 1609, 3999
NarI	GGCGCC	2 cut(s)	3468, 4026
NciI	CCSGG	4 cut(s)	185, 1356, 3326, 3327
NcoI	CCATGG	3 cut(s)	395, 3606, 3773
NmeAIII	GCCGAG	1 cut(s)	1994
NmuCI	GTSAC	8 cut(s)	1061, 1264, 1819, 2166, 2807, 3030, 3133, 3628
NsiI	ATGCAT	1 cut(s)	3252
NspI	RCATGY	7 cut(s)	208, 498, 884, 1899, 2192, 3110, 3201
PaeI	GCATGC	2 cut(s)	2192, 3110
PagI	TCATGA	1 cut(s)	4090
PciI	ACATGT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 451, 2670
PctI	GAATGC	2 cut(s)	25, 613
PdmI	GAANNNNTTC	2 cut(s)	2763, 3656
PflFI	GACNNNGTC	1 cut(s)	1593
PflMI	CCANNNNNTGG	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	4116
Ple19I	CGATCG	1 cut(s)	2668
PleI	GAGTC	5 cut(s)	38, 1502, 1916, 2273, 3631
PluTI	GGCGCC	2 cut(s)	3471, 4029
PpsI	GAGTC	5 cut(s)	38, 1502, 1916, 2273, 3631
Ppu21I	YACGTR	2 cut(s)	1784, 3245
PpuMI	RGGWCCY	3 cut(s)	150, 1960, 2497
PscI	ACATGT	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	1689
PsiI	TTATAA	2 cut(s)	2153, 2706
Psp124BI	GAGCTC	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	1019
Psp5II	RGGWCCY	3 cut(s)	150, 1960, 2497
Psp6I	CCWGG	9 cut(s)	545, 1761, 2145, 2528, 3076, 3140, 3386, 3549, 3899
PspGI	CCWGG	9 cut(s)	545, 1761, 2145, 2528, 3076, 3140, 3386, 3549, 3899
PspPPI	RGGWCCY	3 cut(s)	150, 1960, 2497
PstI	CTGCAG	1 cut(s)	3565
PsuI	RGATCY	1 cut(s)	3064
PsyI	GACNNNGTC	1 cut(s)	1593
PvuI	CGATCG	1 cut(s)	2668
PvuII	CAGCTG	1 cut(s)	1325
RsaI	GTAC	7 cut(s)	72, 634, 1503, 2379, 2545, 3196, 3401
RsaNI	GTAC	7 cut(s)	71, 633, 1502, 2378, 2544, 3195, 3400
SacI	GAGCTC	1 cut(s)	254
SalI	GTCGAC	1 cut(s)	339
SchI	GAGTC	5 cut(s)	38, 1502, 1917, 2274, 3631
SexAI	ACCWGGT	1 cut(s)	545
SfcI	CTRYAG	3 cut(s)	1401, 3561, 3982
SfoI	GGCGCC	2 cut(s)	3469, 4027
SinI	GGWCC	6 cut(s)	150, 1595, 1960, 2497, 2860, 3012
SmaI	CCCGGG	1 cut(s)	3327
SmlI	CTYRAG	2 cut(s)	2504, 2732
SmoI	CTYRAG	2 cut(s)	2504, 2732
SphI	GCATGC	2 cut(s)	2192, 3110
SspDI	GGCGCC	2 cut(s)	3467, 4025
SspI	AATATT	1 cut(s)	2581
SspMI	CTAG	7 cut(s)	1038, 1902, 2774, 3123, 3210, 3479, 3924
SstI	GAGCTC	1 cut(s)	254
StyI	CCWWGG	9 cut(s)	153, 395, 406, 2442, 2747, 3060, 3606, 3773, 3908
TaaI	ACNGT	8 cut(s)	271, 422, 629, 662, 804, 2420, 2539, 3938
TaiI	ACGT	8 cut(s)	311, 346, 448, 1022, 1146, 1786, 2628, 3247
TaqI	TCGA	6 cut(s)	340, 480, 1137, 1475, 3375, 3947
TaqII	GACCGA	1 cut(s)	3875
TatI	WGTACW	2 cut(s)	632, 2377
TauI	GCSGC	2 cut(s)	30, 908
TseFI	GTSAC	8 cut(s)	1061, 1264, 1819, 2166, 2807, 3030, 3133, 3628
TseI	GCWGC	8 cut(s)	733, 977, 1172, 1322, 2015, 3110, 3563, 3734
Tsp45I	GTSAC	8 cut(s)	1061, 1264, 1819, 2166, 2807, 3030, 3133, 3628
TspGWI	ACGGA	3 cut(s)	578, 1034, 3329
TspMI	CCCGGG	1 cut(s)	3325
Tth111I	GACNNNGTC	1 cut(s)	1593
Van91I	CCANNNNNTGG	1 cut(s)	207
VneI	GTGCAC	2 cut(s)	432, 3965
VpaK11BI	GGWCC	6 cut(s)	150, 1595, 1960, 2497, 2860, 3012
VspI	ATTAAT	1 cut(s)	1689
XagI	CCTNNNNNAGG	1 cut(s)	1952
XapI	RAATTY	6 cut(s)	557, 745, 930, 2137, 3162, 3232
XbaI	TCTAGA	3 cut(s)	1037, 1901, 3209
XceI	RCATGY	7 cut(s)	208, 498, 884, 1899, 2192, 3110, 3201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XmaI	CCCGGG	1 cut(s)	3325
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	2763, 3656
XspI	CTAG	7 cut(s)	1038, 1902, 2774, 3123, 3210, 3479, 3924
ZraI	GACGTC	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	3252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.