Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008269

Physical Location & Seq

Genomic Coordinates Forward (+)

51960630 .. 51961757

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCATAGATCGGCAAGTTGGACCAGGGCGGATGAGTACTATGCGTCGTCACCATCGCCAGCAAAGGGCCCGTCGGGGCTGCGAATGTCGGTGTCATTCTTCCAAGGGAGTGATAGTCAGCTGCCGATTTATGATCCGCCCATAGCCGAGTTGGCCAAGAAGGAAAAGGCTCGCGTCAAGTTTGCCGAGAATGCTGTCCATGTTATCCCCTTTGTGCTTCTTCTATGCGCTTTCATTCTTTGGTTTTTCTCTAATCCAGATGTAGATGTGAGGATGAAGGATCCAATAGCAGCAAAAAGTATTGAAGGACTGACATTAGAGGGGGAGATTGAGAACGATAGCGATGGCACTCAAACAGGAGCTCTACCCATTGTAGATTTGGGACTAGACACCGATCCAACAAAGCAAACCAAATATAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

141

Amino Acids

15.56

Weight (kDa)

5.36

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27940
fragaria_vesca	FvH4_7g30980 FvH4_7g30980
malus_domestica	MD01G1214800.v1.1 MD07G1284500.v1.1
prunus_persica	Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1 Prupe.2G306700_v2.0.a1
pyrus_communis	pycom01g22560 pycom07g25840
rosa_chinensis	RchiOBHm_Chr1g0380061
rosa_laevigata	RLG00000026335
rosa_multiflora	Rmu_sc0001232.1_g000004 Rmu_sc0004184.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279750
rosa_rugosa	Rorug01G0417000 Rorug01G0417100 Rorug01G0417200
rosa_samantha	Rh1AG441600 Rh1BG397200 Rh1CG410500 Rh1DG428000
rosa_wichuraiana	Rw1G038390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	29, 137
AclWI	GGATC	4 cut(s)	128, 275, 288, 389
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	121, 362
AluI	AGCT	2 cut(s)	121, 362
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	4 cut(s)	128, 275, 288, 389
AoxI	GGCC	2 cut(s)	67, 153
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	79, 121, 290
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	21, 67, 68
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	71, 364
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	66, 108, 302
BccI	CCATC	2 cut(s)	61, 338
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	80, 122, 291
BlsI	GCNGC	3 cut(s)	81, 123, 292
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	21, 67, 68
BmiI	GGNNCC	2 cut(s)	69, 282
BmrFI	CCNGG	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	24, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	24, 103
BseGI	GGATG	2 cut(s)	37, 279
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	66, 108, 302
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	69, 155
BsiHKAI	GWGCWC	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	69, 155
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 364
Bsp143I	GATC	4 cut(s)	8, 133, 280, 394
BspACI	CCGC	2 cut(s)	29, 137
BspANI	GGCC	2 cut(s)	69, 155
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	69, 282
BspPI	GGATC	4 cut(s)	128, 275, 288, 389
BssECI	CCNNGG	2 cut(s)	24, 103
BssMI	GATC	4 cut(s)	8, 133, 280, 394
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	60, 172
BstF5I	GGATG	2 cut(s)	37, 279
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	4 cut(s)	11, 136, 283, 397
BstMBI	GATC	4 cut(s)	8, 133, 280, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 191
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	66, 108, 302
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	69, 155
BtgZI	GCGATG	2 cut(s)	39, 357
BtsCI	GGATG	2 cut(s)	37, 279
Cac8I	GCNNGC	2 cut(s)	60, 172
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	21, 67, 68
CseI	GACGC	2 cut(s)	33, 163
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	7 cut(s)	69, 79, 121, 146, 155, 170, 362
CviKI_1	RGCY	7 cut(s)	69, 79, 121, 146, 155, 170, 362
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	4 cut(s)	10, 135, 282, 396
DpnII	GATC	4 cut(s)	8, 133, 280, 394
EaeI	YGGCCR	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	44, 126
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	71, 364
Eco47I	GGWCC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	71, 364
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	203
FaiI	YATR	7 cut(s)	6, 42, 132, 143, 201, 226, 417
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	80, 122, 291
FokI	GGATG	2 cut(s)	44, 286
FriOI	GRGCYC	2 cut(s)	71, 364
Fsp4HI	GCNGC	3 cut(s)	80, 122, 291
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	80, 122, 291
HaeIII	GGCC	2 cut(s)	69, 155
HgaI	GACGC	2 cut(s)	33, 163
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HphI	GGTGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	257
Hpy99I	CGWCG	2 cut(s)	49, 76
HpyAV	CCTTC	3 cut(s)	154, 271, 299
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 191
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	8, 133, 280, 394
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	5 cut(s)	10, 37, 72, 270, 342
Lsp1109I	GCAGC	3 cut(s)	66, 108, 302
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	4 cut(s)	10, 135, 282, 396
MboI	GATC	4 cut(s)	8, 133, 280, 394
MboII	GAAGA	2 cut(s)	91, 212
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	71, 364
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	2 cut(s)	264, 313
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	152, 191
NdeII	GATC	4 cut(s)	8, 133, 280, 394
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	2 cut(s)	69, 282
NmeAIII	GCCGAG	2 cut(s)	172, 211
NmuCI	GTSAC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	81, 123, 292
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	69, 282
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	21, 67, 68
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	364
SatI	GCNGC	3 cut(s)	80, 122, 291
Sau3AI	GATC	4 cut(s)	8, 133, 280, 394
Sau96I	GGNCC	3 cut(s)	21, 67, 68
ScaI	AGTACT	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	71, 364
SetI	ASST	2 cut(s)	123, 364
SinI	GGWCC	1 cut(s)	21
SsiI	CCGC	2 cut(s)	29, 137
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	103
TatI	WGTACW	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	3 cut(s)	79, 121, 290
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	223, 290
VpaK11BI	GGWCC	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	2 cut(s)	148, 376
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.