Rorug01G0417100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
51951702 .. 51960098
8397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0417100.1

Sequence Viewer

Length: 1068 bp
ATGGGGGATCAAGACGAGAGCCGTTCGAGCTCATTTCCGATGGGGAAGACTGCACAAGAGAGGGGCTTGCCCTACGTGCCCGAGTGTTATGTGATTCCAACTTCACATCGTGCCAGCTTAACTCCAGAAGTTGCCAATGTACCCACCATCGATTTTGGTAAGCTCAAACAGAGTTCTGATGAAGAACGAGCGACTGTAATCCAAGAAATTAGAACCGCCTGTCGTCAGCTTGGATTCTTTAAAATTATCAACCATGGAATCCATCAATCGGTGCTAGATAGGGCGCTGGCTATGGCTTTGGAGTTTTTCGAGATGCCTGGTTCAGAGAAGGCAAAGTTCATGTCTAACGATGTTCACAAACCAGTGAGGTATGGGACAAGCTTCAAAGATGGAGTTGATAAGATTCAATTCTGGAGGGTTTTCCTCAAACATTATGCTCACCCCTTGGAAAATTGGATCGATTCTTGGCCAAACAATCCACCAAGCTACAGGGAAACCATGGGAGAGTACTGCAGAGAAGTAATGAAACTGAGCTTGGAAATAACAAGTGCCATCACCGAGAGCCTAGGCATAGGTCCAACCTACTTAACCAAGAAAATGGAAAACGGAATGCAAGTGATTACAGTCAATGGCTACCCACCGTGCCCCAGGCCAGAAATGGCGCTAGGGTTGCCGCCTCATTCGGACTACAGCTGCTTCACCATTGTGCTTCAGAGTTTCCCTGGACTGGAAATCATGCATGCTGAGGATGGAAAATGGAAACTAATCCCGCAACTTGAGAGTACTGCTCTTCAAGTCCATGTGGGTGACCATTTTGAGGTACTAAGCAATGGGTTGTACAAGAGTGTTGTGCACAGGGCGACACTGAACAGCGACAGGACTAGAATCTCCATTGCTAGCTTACACAGTTTGGGACTCGATGAGAAGATGAAGACTGCCGAGGAGCTTGTGAATGAAGAACAGCCTGCGAGGTACAGAGAAAGTAGCTTCAGAGATTTTCTGAATTTTCTCTCAAGCAATGATATAGCAGACGGGACCAGCTTCCTCAACTCACTCAAACTAGCATAA

Protein Analysis

355

Amino Acids

40.05

Weight (kDa)

5.87

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 47 - 158 2.7e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 206 - 301 1.7e-22 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 216, 674, 770
AclWI GGATC 2 cut(s) 15, 464
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 1 cut(s) 1003
AcuI CTGAAG 2 cut(s) 695, 973
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 6 cut(s) 141, 509, 784, 822, 839, 974
AfiI CCNNNNNNNGG 3 cut(s) 268, 727, 817
AgsI TTSAA 3 cut(s) 385, 407, 794
AjnI CCWGG 3 cut(s) 316, 647, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AleI CACNNNNGTG 1 cut(s) 704
Alw21I GWGCWC 2 cut(s) 32, 855
Alw44I GTGCAC 1 cut(s) 851
AlwI GGATC 2 cut(s) 15, 464
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 2 cut(s) 467, 650
ApaLI GTGCAC 1 cut(s) 851
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 1 cut(s) 1003
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspA2I CCTAGG 1 cut(s) 565
AspLEI GCGC 2 cut(s) 286, 664
AspS9I GGNCC 2 cut(s) 575, 1035
AsuHPI GGTGA 4 cut(s) 431, 547, 691, 818
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 575, 1035
AvrII CCTAGG 1 cut(s) 565
BaeGI GKGCMC 3 cut(s) 81, 647, 855
BalI TGGCCA 1 cut(s) 469
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 53, 938
Bbv12I GWGCWC 2 cut(s) 32, 855
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 680
BccI CCATC 6 cut(s) 34, 155, 270, 383, 560, 743
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 3 cut(s) 318, 649, 723
BfaI CTAG 6 cut(s) 275, 566, 665, 882, 897, 1061
BfmI CTRYAG 3 cut(s) 487, 511, 688
BfoI RGCGCY 2 cut(s) 287, 665
BisI GCNGC 2 cut(s) 674, 694
BlnI CCTAGG 1 cut(s) 565
BlsI GCNGC 2 cut(s) 675, 695
BmcAI AGTACT 2 cut(s) 509, 784
Bme1390I CCNGG 3 cut(s) 318, 649, 723
Bme18I GGWCC 2 cut(s) 575, 1035
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 575, 1035
BmiI GGNNCC 1 cut(s) 1036
BmrFI CCNGG 3 cut(s) 318, 649, 723
BmsI GCATC 1 cut(s) 303
BmtI GCTAGC 1 cut(s) 900
BpiI GAAGAC 2 cut(s) 53, 938
BplI GAGNNNNNCTC 2 cut(s) 772, 804
BpmI CTGGAG 2 cut(s) 108, 433
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 2 cut(s) 797, 997
Bsa29I ATCGAT 2 cut(s) 150, 459
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 7 cut(s) 253, 444, 498, 565, 647, 721, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 727, 817
Bse1I ACTGG 2 cut(s) 362, 732
Bse3DI GCAATG 3 cut(s) 835, 891, 1024
BseBI CCWGG 3 cut(s) 318, 649, 723
BseCI ATCGAT 2 cut(s) 150, 459
BseDI CCNNGG 7 cut(s) 253, 444, 498, 565, 647, 721, 939
BseGI GGATG 1 cut(s) 754
BseLI CCNNNNNNNGG 3 cut(s) 268, 727, 817
BseMI GCAATG 3 cut(s) 835, 891, 1024
BseMII CTCAG 2 cut(s) 521, 735
BseNI ACTGG 2 cut(s) 362, 732
BseRI GAGGAG 1 cut(s) 956
BseSI GKGCMC 3 cut(s) 81, 647, 855
BseXI GCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 469, 652
BshVI ATCGAT 2 cut(s) 150, 459
BsiHKAI GWGCWC 2 cut(s) 32, 855
BsiHKCI CYCGRG 1 cut(s) 80
BslFI GGGAC 3 cut(s) 388, 927, 1048
BslI CCNNNNNNNGG 3 cut(s) 268, 727, 817
BsmFI GGGAC 3 cut(s) 388, 927, 1048
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 469, 652
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 4 cut(s) 32, 81, 647, 855
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 2 cut(s) 7, 456
Bsp19I CCATGG 2 cut(s) 253, 498
BspACI CCGC 3 cut(s) 216, 674, 770
BspANI GGCC 2 cut(s) 469, 652
BspCNI CTCAG 2 cut(s) 522, 736
BspDI ATCGAT 2 cut(s) 150, 459
BspLI GGNNCC 1 cut(s) 1036
BspMAI CTGCAG 1 cut(s) 515
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 2 cut(s) 15, 464
BspQI GCTCTTC 1 cut(s) 795
BsrDI GCAATG 3 cut(s) 835, 891, 1024
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 2 cut(s) 362, 732
BssECI CCNNGG 7 cut(s) 253, 444, 498, 565, 647, 721, 939
BssMI GATC 2 cut(s) 7, 456
BssT1I CCWWGG 4 cut(s) 253, 444, 498, 565
Bst2UI CCWGG 3 cut(s) 318, 649, 723
Bst4CI ACNGT 4 cut(s) 196, 625, 642, 908
Bst6I CTCTTC 1 cut(s) 795
BstAUI TGTACA 1 cut(s) 837
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 68, 115, 288, 741, 898, 966
BstDEI CTNAG 3 cut(s) 530, 744, 824
BstDSI CCRYGG 2 cut(s) 253, 498
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 1 cut(s) 754
BstH2I RGCGCY 2 cut(s) 287, 665
BstHHI GCGC 2 cut(s) 286, 664
BstKTI GATC 2 cut(s) 10, 459
BstMBI GATC 2 cut(s) 7, 456
BstMWI GCNNNNNNNGC 3 cut(s) 27, 76, 670
BstNI CCWGG 3 cut(s) 318, 649, 723
BstNSI RCATGY 1 cut(s) 743
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 3 cut(s) 316, 647, 721
BstSFI CTRYAG 3 cut(s) 487, 511, 688
BstSLI GKGCMC 3 cut(s) 81, 647, 855
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 2 cut(s) 53, 938
BstXI CCANNNNNNTGG 1 cut(s) 598
Bsu15I ATCGAT 2 cut(s) 150, 459
BsuRI GGCC 2 cut(s) 469, 652
BsuTUI ATCGAT 2 cut(s) 150, 459
BtgI CCRYGG 2 cut(s) 253, 498
BtsCI GGATG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 369, 863
Cac8I GCNNGC 6 cut(s) 68, 115, 288, 741, 898, 966
CfoI GCGC 2 cut(s) 286, 664
Cfr13I GGNCC 2 cut(s) 575, 1035
ClaI ATCGAT 2 cut(s) 150, 459
Csp6I GTAC 6 cut(s) 140, 508, 783, 821, 838, 973
CviAII CATG 6 cut(s) 254, 340, 499, 736, 740, 800
CviQI GTAC 6 cut(s) 140, 508, 783, 821, 838, 973
DdeI CTNAG 3 cut(s) 530, 744, 824
DpnI GATC 2 cut(s) 9, 458
DpnII GATC 2 cut(s) 7, 456
DraI TTTAAA 1 cut(s) 241
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 4 cut(s) 253, 444, 498, 565
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 575, 1035
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 695, 973
Eco88I CYCGRG 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 3 cut(s) 316, 647, 721
EcoT14I CCWWGG 4 cut(s) 253, 444, 498, 565
EcoT22I ATGCAT 1 cut(s) 741
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 4 cut(s) 253, 444, 498, 565
FaeI CATG 6 cut(s) 257, 343, 502, 739, 743, 803
FaqI GGGAC 3 cut(s) 388, 927, 1048
FatI CATG 6 cut(s) 253, 339, 498, 735, 739, 799
FauI CCCGC 1 cut(s) 777
Fnu4HI GCNGC 2 cut(s) 674, 694
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 674, 694
FspBI CTAG 6 cut(s) 275, 566, 665, 882, 897, 1061
GlaI GCGC 2 cut(s) 285, 663
GluI GCNGC 2 cut(s) 674, 694
GsuI CTGGAG 2 cut(s) 108, 433
HaeII RGCGCY 2 cut(s) 287, 665
HaeIII GGCC 2 cut(s) 469, 652
HhaI GCGC 2 cut(s) 286, 664
Hin1II CATG 6 cut(s) 257, 343, 502, 739, 743, 803
Hin6I GCGC 2 cut(s) 284, 662
HinP1I GCGC 2 cut(s) 284, 662
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 7 cut(s) 94, 234, 258, 403, 461, 885, 915
HphI GGTGA 4 cut(s) 431, 547, 691, 818
Hpy166II GTNNAC 2 cut(s) 355, 853
Hpy188I TCNGA 7 cut(s) 39, 178, 325, 685, 714, 992, 1002
Hpy188III TCNNGA 4 cut(s) 11, 125, 310, 412
Hpy8I GTNNAC 2 cut(s) 355, 853
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 4 cut(s) 196, 625, 642, 908
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 53, 513, 613, 739, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 76, 670
HpyF3I CTNAG 3 cut(s) 530, 744, 824
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 6 cut(s) 257, 343, 502, 739, 743, 803
HspAI GCGC 2 cut(s) 284, 662
Kzo9I GATC 2 cut(s) 7, 456
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 1 cut(s) 303
MaeI CTAG 6 cut(s) 275, 566, 665, 882, 897, 1061
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 806
MalI GATC 2 cut(s) 9, 458
MboI GATC 2 cut(s) 7, 456
MboII GAAGA 6 cut(s) 58, 194, 782, 937, 943, 968
MhlI GDGCHC 4 cut(s) 32, 81, 647, 855
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 5 cut(s) 207, 243, 407, 451, 1003
MluNI TGGCCA 1 cut(s) 469
MlyI GAGTC 1 cut(s) 909
MmeI TCCRAC 2 cut(s) 122, 602
Mox20I TGGCCA 1 cut(s) 469
Mph1103I ATGCAT 1 cut(s) 741
MscI TGGCCA 1 cut(s) 469
MseI TTAA 3 cut(s) 119, 240, 587
MslI CAYNNNNRTG 2 cut(s) 704, 804
Msp20I TGGCCA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 693
MspR9I CCNGG 3 cut(s) 318, 649, 723
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 3 cut(s) 318, 649, 723
MwoI GCNNNNNNNGC 3 cut(s) 27, 76, 670
NcoI CCATGG 2 cut(s) 253, 498
NdeII GATC 2 cut(s) 7, 456
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 6 cut(s) 257, 343, 502, 739, 743, 803
NlaIV GGNNCC 1 cut(s) 1036
NmeAIII GCCGAG 1 cut(s) 964
NmuCI GTSAC 1 cut(s) 806
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 704
PaeI GCATGC 1 cut(s) 743
PciSI GCTCTTC 1 cut(s) 795
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 6 cut(s) 94, 234, 258, 403, 461, 885
PkrI GCNGC 2 cut(s) 675, 695
PleI GAGTC 1 cut(s) 909
PpsI GAGTC 1 cut(s) 909
Ppu21I YACGTR 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 316, 647, 721
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 3 cut(s) 316, 647, 721
PspN4I GGNNCC 1 cut(s) 1036
PspPI GGNCC 2 cut(s) 575, 1035
PstI CTGCAG 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 693
RsaI GTAC 6 cut(s) 141, 509, 784, 822, 839, 974
RsaNI GTAC 6 cut(s) 140, 508, 783, 821, 838, 973
RseI CAYNNNNRTG 2 cut(s) 704, 804
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 3 cut(s) 119, 240, 587
SatI GCNGC 2 cut(s) 674, 694
Sau3AI GATC 2 cut(s) 7, 456
Sau96I GGNCC 2 cut(s) 575, 1035
ScaI AGTACT 2 cut(s) 509, 784
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 3 cut(s) 318, 649, 723
SduI GDGCHC 4 cut(s) 32, 81, 647, 855
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 3 cut(s) 487, 511, 688
SinI GGWCC 2 cut(s) 575, 1035
SmiMI CAYNNNNRTG 2 cut(s) 704, 804
SmlI CTYRAG 2 cut(s) 776, 1012
SmoI CTYRAG 2 cut(s) 776, 1012
SphI GCATGC 1 cut(s) 743
Sse9I AATT 5 cut(s) 207, 243, 407, 451, 1003
SsiI CCGC 3 cut(s) 216, 674, 770
SspMI CTAG 6 cut(s) 275, 566, 665, 882, 897, 1061
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 316, 647, 721
StyI CCWWGG 4 cut(s) 253, 444, 498, 565
TaaI ACNGT 4 cut(s) 196, 625, 642, 908
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 26, 150, 309, 459, 918
TasI AATT 5 cut(s) 207, 243, 407, 451, 1003
TatI WGTACW 3 cut(s) 507, 782, 837
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 6 cut(s) 94, 234, 258, 403, 461, 885
Tru1I TTAA 3 cut(s) 119, 240, 587
Tru9I TTAA 3 cut(s) 119, 240, 587
TscAI CASTG 2 cut(s) 369, 870
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 1 cut(s) 693
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 5 cut(s) 195, 328, 539, 944, 969
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 2 cut(s) 369, 870
VneI GTGCAC 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 575, 1035
XapI RAATTY 1 cut(s) 1003
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmaJI CCTAGG 1 cut(s) 565
XspI CTAG 6 cut(s) 275, 566, 665, 882, 897, 1061
ZrmI AGTACT 2 cut(s) 509, 784
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.