Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005945

Physical Location & Seq

Genomic Coordinates Reverse (-)

5687978 .. 5690924

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1069800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTTGAACTTTTGACTATCTGTACTTTGTTGTATTTATCTATCGTAAACTCATCCAAAGGGCCGCATGGACACGTGAACCGGGTTGAGCTTGTGATGAGTATCCATCATAGAAACTTGGCCTCGCTTACTGGATACTGTGACGATACCGACAACTTGGCACTTATGTACGAGTACATGCCCAATGGAAACCTAAAAGAATATCTCTCAGATAGAAGCTCACATATGACTTGGGAAATGAAACTTCGGATGGCTTTAGATATTGCGCTAGGGCTACACTACTTGCATAAAGAATGCAATCCACATATTGTGCATAGAGATGTAAAGACTGCCAATATTCTCTTGAGCAAAAACTTGGATGCAAAAATAGTAGATTTCGGTATGTCCATGGTTTTTCCCAATAACAACGAGACTCATGTGGCATTAATCGTGGGCACAACAGGGCATCTTGATCCTGAGTACTATAATTATGAAAGGTTGAATGAAAAATTTGATGTTTATAGTTTTGGGGTAGTTCTATTAGAGATAATTACTGGCCAACCTGCAATCATAGAAAGTGATGATCTTGTCCACATAGTGGAGTGGGTGAATCCTGAGTTCCAGAATGGGGATTTAACGACTATTTTGGATCGAAGGATTCGAGGAGAGTTCGATGTGAATTCGGTTTGTAAAGCATTAGAGACAGCAATGGCATGCACAACTTCCACCTCCCAACCATGGGTTTTGTGTTGTGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

247

Amino Acids

27.92

Weight (kDa)

5.27

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 181	7.4e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 186	3.4e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29180 AT4G29180 AT4G29180 AT4G29450
fragaria_vesca	FvH4_1g06670 FvH4_1g06670
malus_domestica	MD02G1069800.v1.1 MD02G1071600.v1.1 MD02G1071800.v1.1
prunus_persica	Prupe.7G215900_v2.0.a1
pyrus_communis	pycom02g05560 pycom02g05570 pycom15g17770 pycom15g17780
rosa_chinensis	RchiOBHm_Chr2g0092421 RchiOBHm_Chr2g0092431
rosa_laevigata	RLG00000016310
rosa_multiflora	Rmu_co8303041.1_g000001 Rmu_sc0002503.1_g000001 Rmu_sc0002503.1_g000003 Rmu_sc0013752.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149130
rosa_rugosa	Rorug02G0026200.1
rosa_samantha	Rh2AG072000 Rh2BG072500 Rh2CG073700
rosa_wichuraiana	Rw2G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	577
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	446, 636
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	488, 658
AcvI	CACGTG	1 cut(s)	76
AdeI	CACNNNGTG	1 cut(s)	577
AfaI	GTAC	4 cut(s)	25, 170, 176, 461
AfiI	CCNNNNNNNGG	4 cut(s)	577, 607, 717, 718
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	8, 481
AluBI	AGCT	2 cut(s)	91, 219
AluI	AGCT	2 cut(s)	91, 219
Alw26I	GTCTC	2 cut(s)	404, 674
AlwI	GGATC	2 cut(s)	446, 636
AoxI	GGCC	3 cut(s)	62, 120, 535
ApoI	RAATTY	2 cut(s)	488, 658
AseI	ATTAAT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	76
BccI	CCATC	2 cut(s)	114, 244
BciVI	GTATCC	2 cut(s)	113, 128
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	404, 674
BfaI	CTAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	2 cut(s)	113, 128
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	349, 454
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	387, 716
Bsc4I	CCNNNNNNNGG	4 cut(s)	577, 607, 717, 718
Bse1I	ACTGG	2 cut(s)	136, 538
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	387, 716
BseGI	GGATG	3 cut(s)	53, 255, 364
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	4 cut(s)	577, 607, 717, 718
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	3 cut(s)	222, 447, 585
BseNI	ACTGG	2 cut(s)	136, 538
BseRI	GAGGAG	1 cut(s)	657
BseSI	GKGCMC	1 cut(s)	437
BshFI	GGCC	3 cut(s)	64, 122, 537
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	577, 607, 717, 718
BsmAI	GTCTC	2 cut(s)	404, 674
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	64, 122, 537
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	451, 562, 628
Bsp19I	CCATGG	2 cut(s)	387, 716
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	3 cut(s)	64, 122, 537
BspCNI	CTCAG	3 cut(s)	221, 448, 586
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	2 cut(s)	446, 636
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	136, 538
BssECI	CCNNGG	2 cut(s)	387, 716
BssMI	GATC	3 cut(s)	451, 562, 628
BssT1I	CCWWGG	2 cut(s)	387, 716
Bst4CI	ACNGT	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	3 cut(s)	208, 456, 594
BstDSI	CCRYGG	2 cut(s)	387, 716
BstF5I	GGATG	3 cut(s)	53, 255, 364
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	454, 565, 631
BstMAI	GTCTC	2 cut(s)	404, 674
BstMBI	GATC	3 cut(s)	451, 562, 628
BstNSI	RCATGY	2 cut(s)	181, 696
BstSCI	CCNGG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	437
BsuI	GTATCC	2 cut(s)	113, 128
BsuRI	GGCC	3 cut(s)	64, 122, 537
BtgI	CCRYGG	2 cut(s)	387, 716
BtsCI	GGATG	3 cut(s)	53, 255, 364
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	694
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	4 cut(s)	24, 169, 175, 460
CviAII	CATG	6 cut(s)	68, 178, 388, 416, 693, 717
CviJI	RGCY	7 cut(s)	64, 91, 122, 219, 254, 274, 537
CviKI_1	RGCY	7 cut(s)	64, 91, 122, 219, 254, 274, 537
CviQI	GTAC	4 cut(s)	24, 169, 175, 460
DdeI	CTNAG	3 cut(s)	208, 456, 594
DpnI	GATC	3 cut(s)	453, 564, 630
DpnII	GATC	3 cut(s)	451, 562, 628
DraIII	CACNNNGTG	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	387, 716
Eco72I	CACGTG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	658
EcoT14I	CCWWGG	2 cut(s)	387, 716
ErhI	CCWWGG	2 cut(s)	387, 716
FaeI	CATG	6 cut(s)	71, 181, 391, 419, 696, 720
FatI	CATG	6 cut(s)	67, 177, 387, 415, 692, 716
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	40, 262, 371
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	64, 122, 537
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	6 cut(s)	71, 181, 391, 419, 696, 720
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	3 cut(s)	412, 589, 637
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	3 cut(s)	49, 79, 571
Hpy188I	TCNGA	2 cut(s)	211, 249
Hpy188III	TCNNGA	5 cut(s)	343, 449, 455, 593, 601
Hpy8I	GTNNAC	3 cut(s)	49, 79, 571
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	286, 297, 313, 362, 545, 696
HpyF3I	CTNAG	3 cut(s)	208, 456, 594
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	6 cut(s)	71, 181, 391, 419, 696, 720
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	451, 562, 628
LpnPI	CCDG	8 cut(s)	95, 117, 426, 468, 519, 555, 606, 614
LweI	GCATC	2 cut(s)	349, 454
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	453, 564, 630
MboI	GATC	3 cut(s)	451, 562, 628
MhlI	GDGCHC	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	5 cut(s)	466, 488, 528, 658, 736
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	3 cut(s)	133, 635, 718
Mox20I	TGGCCA	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	3 cut(s)	425, 614, 739
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	2 cut(s)	387, 716
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	3 cut(s)	451, 562, 628
NlaIII	CATG	6 cut(s)	71, 181, 391, 419, 696, 720
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	2 cut(s)	181, 696
PaeI	GCATGC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	589, 637
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	406
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	4 cut(s)	25, 170, 176, 461
RsaNI	GTAC	4 cut(s)	24, 169, 175, 460
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	425, 614, 739
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	451, 562, 628
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	78, 93, 195, 221, 479, 544, 710
SfaNI	GCATC	2 cut(s)	349, 454
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	5 cut(s)	466, 488, 528, 658, 736
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	387, 716
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	631, 640, 651
TasI	AATT	5 cut(s)	466, 488, 528, 658, 736
TatI	WGTACW	3 cut(s)	23, 174, 459
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	589, 637
Tru1I	TTAA	3 cut(s)	425, 614, 739
Tru9I	TTAA	3 cut(s)	425, 614, 739
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	254, 486, 498
Van91I	CCANNNNNTGG	1 cut(s)	577
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	2 cut(s)	488, 658
XceI	RCATGY	2 cut(s)	181, 696
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.