Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002503.1

Orthogroup ID

OG0005945

Physical Location & Seq

Genomic Coordinates Reverse (-)

12344 .. 14675

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgcagcaggcgtggcggtgctgtaggggcagccggcgtgaggcaatgctgcaggaaggcagcggtggagtagaaacctttaagaaagaaggaattcctattgcatcaaagaagtgccagtttagttatgatgaggttatagaaatcaccaaaaatttcaacacggaaatcggaaaaggaggattcggggctgtgtaccatggctacatgaaagatggcacccaagttgcagtcaaaatgctttctccatcatcaactcaaggaccgagggagttccaaactgaggctgagctcctgatgagaatccatcacagaaatttggcatcatttattggatactgtgatgatgctgataacctggctcttatatatgagtacatggctaatgggaaccttaaagattatctctcagttaaaagctcaggtatgacttgggaattgagacttcacatcgccatagatgctgcacaagggctagagtacttacaccatggatgcaagccacctattgtacacagagatgtgaagactgccaacattctcttaagtgaaaacctggaagctaagatagcagattttggtctttctaaggttttttccaatgataatgaaaccgacgtggaaaccacagttatgggcacagcaggttatttagacccagagtactacagttctcacaagttgaatgaaaaaagcgacgtgtatagtttcggggtagtactattggaactgatcacaggccaacctgcagtcataagaagcgatgaacgaatccacattgtgcagtgggtgagtcctgaactccagaaaggggatatagcaagtgttgttgatcaaagaatggaaggagatttcgatgtgaattcagtttggaaagctttcgaaatagcaatgacatgcacaactagaacctctcaacaaagagccaccatgggttttgtgttatcagagctaaaacagtgtttggaaatggagttgtcgaggaatcgagaaagaaattctggattgactgaagaaagtagagacagatttgcagcagcatatagtagttcaccatataatagttccatgtatacagattccacaaatgctgattccatgactgggccatttgctaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.78

Weight (kDa)

5.32

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29180 AT4G29180 AT4G29180 AT4G29450
fragaria_vesca	FvH4_1g06670 FvH4_1g06670
malus_domestica	MD02G1069800.v1.1 MD02G1071600.v1.1 MD02G1071800.v1.1
prunus_persica	Prupe.7G215900_v2.0.a1
pyrus_communis	pycom02g05560 pycom02g05570 pycom15g17770 pycom15g17780
rosa_chinensis	RchiOBHm_Chr2g0092421 RchiOBHm_Chr2g0092431
rosa_laevigata	RLG00000016310
rosa_multiflora	Rmu_co8303041.1_g000001 Rmu_sc0002503.1_g000001 Rmu_sc0002503.1_g000003 Rmu_sc0013752.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149130
rosa_rugosa	Rorug02G0026200.1
rosa_samantha	Rh2AG072000 Rh2BG072500 Rh2CG073700
rosa_wichuraiana	Rw2G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	635, 754
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	1073
AciI	CCGC	2 cut(s)	16, 63
AcsI	RAATTY	5 cut(s)	93, 154, 316, 862, 997
AcuI	CTGAAG	1 cut(s)	1032
AdeI	CACNNNGTG	1 cut(s)	781
AfaI	GTAC	6 cut(s)	197, 377, 482, 513, 665, 720
AfiI	CCNNNNNNNGG	4 cut(s)	40, 283, 811, 1104
AflII	CTTAAG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	160, 685
AjiI	CACGTC	2 cut(s)	619, 700
AjnI	CCWGG	2 cut(s)	357, 555
AluBI	AGCT	5 cut(s)	292, 420, 563, 878, 952
AluI	AGCT	5 cut(s)	292, 420, 563, 878, 952
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	436, 1017
AoxI	GGCC	2 cut(s)	739, 1106
ApeKI	GCWGC	7 cut(s)	4, 30, 49, 60, 464, 1034, 1037
ApoI	RAATTY	5 cut(s)	93, 154, 316, 862, 997
Asp700I	GAANNNNTTC	2 cut(s)	93, 878
AspS9I	GGNCC	2 cut(s)	263, 1106
AsuHPI	GGTGA	3 cut(s)	139, 802, 1044
AsuII	TTCGAA	1 cut(s)	882
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	7 cut(s)	16, 36, 42, 72, 451, 1046, 1049
BccI	CCATC	3 cut(s)	209, 256, 315
BciT130I	CCWGG	2 cut(s)	359, 557
BciVI	GTATCC	1 cut(s)	329
BclI	TGATCA	2 cut(s)	732, 832
BcoDI	GTCTC	2 cut(s)	436, 1017
BfaI	CTAG	3 cut(s)	476, 906, 1116
BfmI	CTRYAG	4 cut(s)	22, 50, 667, 747
BfrI	CTTAAG	1 cut(s)	544
BfuAI	ACCTGC	2 cut(s)	635, 754
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	7 cut(s)	5, 31, 50, 61, 465, 1035, 1038
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	7 cut(s)	6, 32, 51, 62, 466, 1036, 1039
BmcAI	AGTACT	3 cut(s)	482, 665, 720
Bme1390I	CCNGG	2 cut(s)	359, 557
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	2 cut(s)	619, 700
BmgT120I	GGNCC	2 cut(s)	263, 1106
BmiI	GGNNCC	2 cut(s)	220, 392
BmrFI	CCNGG	2 cut(s)	359, 557
BmrI	ACTGGG	1 cut(s)	1113
BmsI	GCATC	5 cut(s)	113, 332, 337, 451, 485
BmuI	ACTGGG	1 cut(s)	1113
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	882
BpuEI	CTTGAG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	199, 266, 490, 930
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 283, 811, 1104
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	118, 1108
Bse3DI	GCAATG	2 cut(s)	51, 897
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	359, 557
BseDI	CCNNGG	4 cut(s)	199, 266, 490, 930
BseGI	GGATG	1 cut(s)	500
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	4 cut(s)	40, 283, 811, 1104
BseMI	GCAATG	2 cut(s)	51, 897
BseMII	CTCAG	4 cut(s)	273, 279, 423, 435
BseNI	ACTGG	2 cut(s)	118, 1108
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	7 cut(s)	16, 36, 42, 72, 451, 1046, 1049
BsgI	GTGCAG	2 cut(s)	450, 803
BshFI	GGCC	2 cut(s)	741, 1108
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	4 cut(s)	40, 283, 811, 1104
BsmAI	GTCTC	2 cut(s)	436, 1017
BsnI	GGCC	2 cut(s)	741, 1108
Bsp119I	TTCGAA	1 cut(s)	882
Bsp1286I	GDGCHC	2 cut(s)	294, 641
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	732, 832
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	3 cut(s)	199, 490, 930
BspACI	CCGC	2 cut(s)	16, 63
BspANI	GGCC	2 cut(s)	741, 1108
BspCNI	CTCAG	4 cut(s)	274, 280, 422, 434
BspLI	GGNNCC	2 cut(s)	220, 392
BspMAI	CTGCAG	2 cut(s)	54, 751
BspMI	ACCTGC	2 cut(s)	635, 754
BspT104I	TTCGAA	1 cut(s)	882
BspT107I	GGYRCC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	51, 897
BsrFI	RCCGGY	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	118, 1108
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	199, 266, 490, 930
BssMI	GATC	2 cut(s)	732, 832
BssNAI	GTATAC	1 cut(s)	1074
BssT1I	CCWWGG	3 cut(s)	199, 490, 930
Bst1107I	GTATAC	1 cut(s)	1074
Bst2UI	CCWGG	2 cut(s)	359, 557
Bst4CI	ACNGT	4 cut(s)	341, 631, 671, 960
BstAFI	CTTAAG	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	882
BstC8I	GCNNGC	3 cut(s)	9, 35, 500
BstDEI	CTNAG	6 cut(s)	282, 288, 409, 421, 564, 588
BstDSI	CCRYGG	3 cut(s)	199, 490, 930
BstF5I	GGATG	1 cut(s)	500
BstKTI	GATC	2 cut(s)	735, 835
BstMAI	GTCTC	2 cut(s)	436, 1017
BstMBI	GATC	2 cut(s)	732, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 27, 461, 569
BstNI	CCWGG	2 cut(s)	359, 557
BstNSI	RCATGY	1 cut(s)	900
BstSCI	CCNGG	2 cut(s)	357, 555
BstSFI	CTRYAG	4 cut(s)	22, 50, 667, 747
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	7 cut(s)	16, 36, 42, 72, 451, 1046, 1049
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstZ17I	GTATAC	1 cut(s)	1074
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	741, 1108
BtgI	CCRYGG	3 cut(s)	199, 490, 930
BtgZI	GCGATG	2 cut(s)	436, 777
BtrI	CACGTC	2 cut(s)	619, 700
BtsCI	GGATG	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	791, 965
BveI	ACCTGC	2 cut(s)	635, 754
Cac8I	GCNNGC	3 cut(s)	9, 35, 500
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	263, 1106
Csp6I	GTAC	6 cut(s)	196, 376, 481, 512, 664, 719
CviAII	CATG	8 cut(s)	200, 208, 379, 491, 897, 931, 1069, 1099
CviQI	GTAC	6 cut(s)	196, 376, 481, 512, 664, 719
DdeI	CTNAG	6 cut(s)	282, 288, 409, 421, 564, 588
DpnI	GATC	2 cut(s)	734, 834
DpnII	GATC	2 cut(s)	732, 832
DraIII	CACNNNGTG	1 cut(s)	781
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	3 cut(s)	199, 490, 930
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	1032
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	2 cut(s)	93, 862
EcoRII	CCWGG	2 cut(s)	357, 555
EcoT14I	CCWWGG	3 cut(s)	199, 490, 930
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	3 cut(s)	199, 490, 930
FaeI	CATG	8 cut(s)	203, 211, 382, 494, 900, 934, 1072, 1102
FatI	CATG	8 cut(s)	199, 207, 378, 490, 896, 930, 1068, 1098
FbaI	TGATCA	2 cut(s)	732, 832
FblI	GTMKAC	1 cut(s)	1073
Fnu4HI	GCNGC	7 cut(s)	5, 31, 50, 61, 465, 1035, 1038
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	7 cut(s)	5, 31, 50, 61, 465, 1035, 1038
FspBI	CTAG	3 cut(s)	476, 906, 1116
GluI	GCNGC	7 cut(s)	5, 31, 50, 61, 465, 1035, 1038
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	741, 1108
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	8 cut(s)	203, 211, 382, 494, 900, 934, 1072, 1102
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	7 cut(s)	183, 303, 771, 793, 985, 1079, 1094
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	139, 802, 1044
Hpy166II	GTNNAC	4 cut(s)	196, 514, 1052, 1074
Hpy188I	TCNGA	2 cut(s)	173, 949
Hpy188III	TCNNGA	5 cut(s)	295, 797, 805, 989, 1002
Hpy8I	GTNNAC	4 cut(s)	196, 514, 1052, 1074
Hpy99I	CGWCG	2 cut(s)	620, 701
HpyAV	CCTTC	3 cut(s)	50, 83, 839
HpyCH4III	ACNGT	4 cut(s)	341, 631, 671, 960
HpyCH4IV	ACGT	2 cut(s)	618, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 27, 461, 569
HpyF3I	CTNAG	6 cut(s)	282, 288, 409, 421, 564, 588
HpySE526I	ACGT	2 cut(s)	618, 699
Hsp92II	CATG	8 cut(s)	203, 211, 382, 494, 900, 934, 1072, 1102
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Ksp22I	TGATCA	2 cut(s)	732, 832
Kzo9I	GATC	2 cut(s)	732, 832
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	7 cut(s)	16, 36, 42, 72, 451, 1046, 1049
LweI	GCATC	5 cut(s)	113, 332, 337, 451, 485
MaeI	CTAG	3 cut(s)	476, 906, 1116
MaeII	ACGT	2 cut(s)	618, 699
MalI	GATC	2 cut(s)	734, 834
MboI	GATC	2 cut(s)	732, 832
MboII	GAAGA	2 cut(s)	538, 1025
MhlI	GDGCHC	2 cut(s)	294, 641
MluCI	AATT	6 cut(s)	93, 154, 316, 437, 862, 997
MlyI	GAGTC	1 cut(s)	802
MnlI	CCTC	7 cut(s)	34, 127, 173, 261, 277, 922, 975
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	2 cut(s)	93, 878
MseI	TTAA	4 cut(s)	81, 396, 414, 545
MslI	CAYNNNNRTG	2 cut(s)	519, 632
MspA1I	CMGCKG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	359, 557
MvaI	CCWGG	2 cut(s)	359, 557
MwoI	GCNNNNNNNGC	4 cut(s)	13, 27, 461, 569
NaeI	GCCGGC	1 cut(s)	35
NcoI	CCATGG	3 cut(s)	199, 490, 930
NdeII	GATC	2 cut(s)	732, 832
NgoMIV	GCCGGC	1 cut(s)	33
NlaIII	CATG	8 cut(s)	203, 211, 382, 494, 900, 934, 1072, 1102
NlaIV	GGNNCC	2 cut(s)	220, 392
NspI	RCATGY	1 cut(s)	900
NspV	TTCGAA	1 cut(s)	882
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	93, 878
PfeI	GAWTC	6 cut(s)	183, 303, 771, 985, 1079, 1094
PkrI	GCNGC	7 cut(s)	6, 32, 51, 62, 466, 1036, 1039
PleI	GAGTC	1 cut(s)	801
PpsI	GAGTC	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	357, 555
PspGI	CCWGG	2 cut(s)	357, 555
PspN4I	GGNNCC	2 cut(s)	220, 392
PspPI	GGNCC	2 cut(s)	263, 1106
PstI	CTGCAG	2 cut(s)	54, 751
RsaI	GTAC	6 cut(s)	197, 377, 482, 513, 665, 720
RsaNI	GTAC	6 cut(s)	196, 376, 481, 512, 664, 719
RseI	CAYNNNNRTG	2 cut(s)	519, 632
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	81, 396, 414, 545
SatI	GCNGC	7 cut(s)	5, 31, 50, 61, 465, 1035, 1038
Sau3AI	GATC	2 cut(s)	732, 832
Sau96I	GGNCC	2 cut(s)	263, 1106
ScaI	AGTACT	3 cut(s)	482, 665, 720
SchI	GAGTC	1 cut(s)	802
ScrFI	CCNGG	2 cut(s)	359, 557
SduI	GDGCHC	2 cut(s)	294, 641
SfaNI	GCATC	5 cut(s)	113, 332, 337, 451, 485
SfcI	CTRYAG	4 cut(s)	22, 50, 667, 747
SfuI	TTCGAA	1 cut(s)	882
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	519, 632
SmlI	CTYRAG	2 cut(s)	258, 544
SmoI	CTYRAG	2 cut(s)	258, 544
Sse9I	AATT	6 cut(s)	93, 154, 316, 437, 862, 997
SsiI	CCGC	2 cut(s)	16, 63
SspMI	CTAG	3 cut(s)	476, 906, 1116
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	357, 555
StyI	CCWWGG	3 cut(s)	199, 490, 930
TaaI	ACNGT	4 cut(s)	341, 631, 671, 960
TaiI	ACGT	2 cut(s)	621, 702
TaqI	TCGA	4 cut(s)	855, 882, 980, 988
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	6 cut(s)	93, 154, 316, 437, 862, 997
TatI	WGTACW	5 cut(s)	375, 480, 511, 663, 718
TfiI	GAWTC	6 cut(s)	183, 303, 771, 985, 1079, 1094
Tru1I	TTAA	4 cut(s)	81, 396, 414, 545
Tru9I	TTAA	4 cut(s)	81, 396, 414, 545
TscAI	CASTG	2 cut(s)	791, 965
TseI	GCWGC	7 cut(s)	4, 30, 49, 60, 464, 1034, 1037
TspDTI	ATGAA	4 cut(s)	224, 624, 702, 780
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	791, 965
Vha464I	CTTAAG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	5 cut(s)	93, 154, 316, 862, 997
XceI	RCATGY	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	1073
XmnI	GAANNNNTTC	2 cut(s)	93, 878
XspI	CTAG	3 cut(s)	476, 906, 1116
ZrmI	AGTACT	3 cut(s)	482, 665, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.