RchiOBHm_Chr2g0092421

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005945
Physical Location & Seq
Reverse (-)
5943922 .. 5945596
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46753

Sequence Viewer

Length: 1149 bp
ATGCAAAAAAAGAAGAAAATTGTTGCTCCGATAGTTGGATCATTATTATCAGCACTAGTAGTCCTTATAGTTCTCATACTTGTCTGGAAGCTGAGAACAAAAAAGAACTCAGAAACCTTTAAGAAAGAAGGAATTCCTATTGCATCAAAGAAGTGCCAGTTTAGTTATGATGAGGTTATAGAAATCACCAAAAATTTCAACACTGAAATCGGAAAAGGAGGATTCGGGGCTGTGTACCATGGCTACATGAAAGATGGCACCCAAGTTGCAGTCAAAATTCTTTCTCCATCATCAACTCAAGGACCGAGGGAGTTCCAAACTGAGGCTGAGCTCCTGATGAGAATCCATCACAGAAATTTGGCATCATTTATTGGATACTGTGATGATGCTGATAACCTGGCTCTTATATATGAGTACATGGCTAACGGGAACCTTAAAGATTATCTCTCAGGTATGACTTGGGAATTGAGACTTCGCATCGCCATAGATGCTGCACAAGGGCTAGAGTACTTACACCATGGATGCAAGCCACCTATTGTACACAGAGATGTGAAGACTGCCAACATTCTCTTAAGTGAAAACCTGGAAGCTAAGATAGCAGATTTTGGTCTTTCCAAGGTTTTTTCCAATGATAATGAAACCGACGTGGAAACCACAGTTATGGGCACAGCAGGTTATTTAGACCCAGAGTACTACAGTTCTCACAAGTTGAATGAAAAAAGCGACGTGTATAGTTTCGGGGTAGTACTATTGGAACTGATCACAGGCCAACCTGCAGTCATAAGAAGCGATGAACGAATCCACATTGTGCAGTGGGTGAGTCCTGAACTCCAGAAAGGGGATATAGCAAGTGTTGTTGATCAAAGAATGGAAGGAGATTTCGATGTGAATTCAGTTTGGAAAGCTTTCGAAATATCAATGACATGCACAACTAGAACCTCTCAACAAAGAGCCACCATGGGTTTTGTGTTATCAGAGCTAAAACAGTGTTTGGAAATGGAGTTGTCGAGGAATCGAGAAAGAAATTCTGGATTGACTGAAGAAAGTAGAGACAGATTTGCAGCAGCATATAGTAGTTCACCATATAATAGTTCCATGTATACAGATTCCACAAATGCTGATTCCATGACTGGGCCATTTGCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

382

Amino Acids

42.82

Weight (kDa)

5.84

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 66 - 326 6.3e-49 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 67 - 270 8.2e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 662, 781
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 1100
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 6 cut(s) 132, 193, 276, 355, 889, 1024
AcuI CTGAAG 1 cut(s) 1059
AdeI CACNNNGTG 1 cut(s) 808
AfaI GTAC 6 cut(s) 236, 416, 509, 540, 692, 747
AfiI CCNNNNNNNGG 4 cut(s) 35, 322, 838, 1131
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 2 cut(s) 199, 712
AhlI ACTAGT 1 cut(s) 55
AjiI CACGTC 2 cut(s) 646, 727
AjnI CCWGG 2 cut(s) 396, 582
AluBI AGCT 5 cut(s) 91, 331, 590, 905, 979
AluI AGCT 5 cut(s) 91, 331, 590, 905, 979
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 463, 1044
AlwI GGATC 1 cut(s) 46
AoxI GGCC 2 cut(s) 766, 1133
ApeKI GCWGC 3 cut(s) 491, 1061, 1064
ApoI RAATTY 6 cut(s) 132, 193, 276, 355, 889, 1024
Asp700I GAANNNNTTC 2 cut(s) 132, 905
AspS9I GGNCC 2 cut(s) 302, 1133
AsuHPI GGTGA 3 cut(s) 178, 829, 1071
AsuII TTCGAA 1 cut(s) 909
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 478, 1073, 1076
BccI CCATC 3 cut(s) 248, 295, 354
BciT130I CCWGG 2 cut(s) 398, 584
BciVI GTATCC 1 cut(s) 368
BclI TGATCA 2 cut(s) 759, 859
BcoDI GTCTC 2 cut(s) 463, 1044
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 4 cut(s) 56, 503, 933, 1143
BfmI CTRYAG 2 cut(s) 694, 774
BfrI CTTAAG 1 cut(s) 571
BfuAI ACCTGC 2 cut(s) 662, 781
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 3 cut(s) 492, 1062, 1065
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 493, 1063, 1066
BmcAI AGTACT 3 cut(s) 509, 692, 747
Bme1390I CCNGG 2 cut(s) 398, 584
Bme18I GGWCC 1 cut(s) 302
BmgBI CACGTC 2 cut(s) 646, 727
BmgT120I GGNCC 2 cut(s) 302, 1133
BmiI GGNNCC 2 cut(s) 259, 431
BmrFI CCNGG 2 cut(s) 398, 584
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 6 cut(s) 152, 371, 376, 478, 486, 512
BmuI ACTGGG 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 815
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 5 cut(s) 238, 305, 517, 615, 957
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 322, 838, 1131
Bse1I ACTGG 2 cut(s) 157, 1135
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 2 cut(s) 398, 584
BseDI CCNNGG 5 cut(s) 238, 305, 517, 615, 957
BseGI GGATG 1 cut(s) 527
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 4 cut(s) 35, 322, 838, 1131
BseMII CTCAG 5 cut(s) 83, 123, 312, 318, 462
BseNI ACTGG 2 cut(s) 157, 1135
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 3 cut(s) 478, 1073, 1076
BsgI GTGCAG 2 cut(s) 477, 830
BshFI GGCC 2 cut(s) 768, 1135
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 35, 322, 838, 1131
BsmAI GTCTC 2 cut(s) 463, 1044
BsnI GGCC 2 cut(s) 768, 1135
Bsp119I TTCGAA 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 333, 668
Bsp1407I TGTACA 1 cut(s) 538
Bsp143I GATC 3 cut(s) 38, 759, 859
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 3 cut(s) 238, 517, 957
BspANI GGCC 2 cut(s) 768, 1135
BspCNI CTCAG 5 cut(s) 84, 122, 313, 319, 461
BspLI GGNNCC 2 cut(s) 259, 431
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 2 cut(s) 662, 781
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 571
BsrGI TGTACA 1 cut(s) 538
BsrI ACTGG 2 cut(s) 157, 1135
BssECI CCNNGG 5 cut(s) 238, 305, 517, 615, 957
BssMI GATC 3 cut(s) 38, 759, 859
BssNAI GTATAC 1 cut(s) 1101
BssT1I CCWWGG 4 cut(s) 238, 517, 615, 957
Bst1107I GTATAC 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 398, 584
Bst4CI ACNGT 4 cut(s) 380, 658, 698, 987
BstAFI CTTAAG 1 cut(s) 571
BstAUI TGTACA 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 909
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 6 cut(s) 92, 109, 321, 327, 448, 591
BstDSI CCRYGG 3 cut(s) 238, 517, 957
BstF5I GGATG 1 cut(s) 527
BstKTI GATC 3 cut(s) 41, 762, 862
BstMAI GTCTC 2 cut(s) 463, 1044
BstMBI GATC 3 cut(s) 38, 759, 859
BstMWI GCNNNNNNNGC 2 cut(s) 488, 596
BstNI CCWGG 2 cut(s) 398, 584
BstNSI RCATGY 1 cut(s) 927
BstSCI CCNGG 2 cut(s) 396, 582
BstSFI CTRYAG 2 cut(s) 694, 774
BstSLI GKGCMC 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 478, 1073, 1076
BstV2I GAAGAC 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 2 cut(s) 768, 1135
BtgI CCRYGG 3 cut(s) 238, 517, 957
BtgZI GCGATG 2 cut(s) 463, 804
BtrI CACGTC 2 cut(s) 646, 727
BtsCI GGATG 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 3 cut(s) 201, 818, 992
BveI ACCTGC 2 cut(s) 662, 781
Cac8I GCNNGC 1 cut(s) 527
Cfr13I GGNCC 2 cut(s) 302, 1133
Csp6I GTAC 6 cut(s) 235, 415, 508, 539, 691, 746
CviAII CATG 8 cut(s) 239, 247, 418, 518, 924, 958, 1096, 1126
CviQI GTAC 6 cut(s) 235, 415, 508, 539, 691, 746
DdeI CTNAG 6 cut(s) 92, 109, 321, 327, 448, 591
DpnI GATC 3 cut(s) 40, 761, 861
DpnII GATC 3 cut(s) 38, 759, 859
DraIII CACNNNGTG 1 cut(s) 808
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 4 cut(s) 238, 517, 615, 957
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 1059
EcoICRI GAGCTC 1 cut(s) 331
EcoRI GAATTC 2 cut(s) 132, 889
EcoRII CCWGG 2 cut(s) 396, 582
EcoT14I CCWWGG 4 cut(s) 238, 517, 615, 957
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 4 cut(s) 238, 517, 615, 957
FaeI CATG 8 cut(s) 242, 250, 421, 521, 927, 961, 1099, 1129
FatI CATG 8 cut(s) 238, 246, 417, 517, 923, 957, 1095, 1125
FbaI TGATCA 2 cut(s) 759, 859
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 3 cut(s) 492, 1062, 1065
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 3 cut(s) 492, 1062, 1065
FspBI CTAG 4 cut(s) 56, 503, 933, 1143
GluI GCNGC 3 cut(s) 492, 1062, 1065
GsuI CTGGAG 1 cut(s) 815
HaeIII GGCC 2 cut(s) 768, 1135
Hin1II CATG 8 cut(s) 242, 250, 421, 521, 927, 961, 1099, 1129
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 7 cut(s) 222, 342, 798, 820, 1012, 1106, 1121
HphI GGTGA 3 cut(s) 178, 829, 1071
Hpy166II GTNNAC 4 cut(s) 235, 541, 1079, 1101
Hpy188I TCNGA 4 cut(s) 30, 112, 212, 976
Hpy188III TCNNGA 6 cut(s) 85, 334, 824, 832, 1016, 1029
Hpy8I GTNNAC 4 cut(s) 235, 541, 1079, 1101
Hpy99I CGWCG 2 cut(s) 647, 728
HpyAV CCTTC 2 cut(s) 122, 866
HpyCH4III ACNGT 4 cut(s) 380, 658, 698, 987
HpyCH4IV ACGT 2 cut(s) 645, 726
HpyCH4V TGCA 9 cut(s) 4, 143, 269, 494, 525, 776, 811, 927, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 596
HpyF3I CTNAG 6 cut(s) 92, 109, 321, 327, 448, 591
HpySE526I ACGT 2 cut(s) 645, 726
Hsp92II CATG 8 cut(s) 242, 250, 421, 521, 927, 961, 1099, 1129
Ksp22I TGATCA 2 cut(s) 759, 859
Kzo9I GATC 3 cut(s) 38, 759, 859
LmnI GCTCC 2 cut(s) 31, 336
Lsp1109I GCAGC 3 cut(s) 478, 1073, 1076
LweI GCATC 6 cut(s) 152, 371, 376, 478, 486, 512
MaeI CTAG 4 cut(s) 56, 503, 933, 1143
MaeII ACGT 2 cut(s) 645, 726
MalI GATC 3 cut(s) 40, 761, 861
MboI GATC 3 cut(s) 38, 759, 859
MboII GAAGA 3 cut(s) 25, 565, 1052
MhlI GDGCHC 2 cut(s) 333, 668
MluCI AATT 8 cut(s) 18, 132, 193, 276, 355, 464, 889, 1024
MlyI GAGTC 1 cut(s) 829
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 6 cut(s) 166, 212, 300, 316, 949, 1002
MroXI GAANNNNTTC 2 cut(s) 132, 905
MseI TTAA 3 cut(s) 120, 435, 572
MslI CAYNNNNRTG 2 cut(s) 546, 659
MspCI CTTAAG 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 398, 584
MvaI CCWGG 2 cut(s) 398, 584
MwoI GCNNNNNNNGC 2 cut(s) 488, 596
NcoI CCATGG 3 cut(s) 238, 517, 957
NdeII GATC 3 cut(s) 38, 759, 859
NlaIII CATG 8 cut(s) 242, 250, 421, 521, 927, 961, 1099, 1129
NlaIV GGNNCC 2 cut(s) 259, 431
NspI RCATGY 1 cut(s) 927
NspV TTCGAA 1 cut(s) 909
PdmI GAANNNNTTC 2 cut(s) 132, 905
PfeI GAWTC 6 cut(s) 222, 342, 798, 1012, 1106, 1121
PkrI GCNGC 3 cut(s) 493, 1063, 1066
PleI GAGTC 1 cut(s) 828
PpsI GAGTC 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 396, 582
PspGI CCWGG 2 cut(s) 396, 582
PspN4I GGNNCC 2 cut(s) 259, 431
PspPI GGNCC 2 cut(s) 302, 1133
PstI CTGCAG 1 cut(s) 778
RsaI GTAC 6 cut(s) 236, 416, 509, 540, 692, 747
RsaNI GTAC 6 cut(s) 235, 415, 508, 539, 691, 746
RseI CAYNNNNRTG 2 cut(s) 546, 659
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 120, 435, 572
SatI GCNGC 3 cut(s) 492, 1062, 1065
Sau3AI GATC 3 cut(s) 38, 759, 859
Sau96I GGNCC 2 cut(s) 302, 1133
ScaI AGTACT 3 cut(s) 509, 692, 747
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 2 cut(s) 398, 584
SduI GDGCHC 2 cut(s) 333, 668
SfaNI GCATC 6 cut(s) 152, 371, 376, 478, 486, 512
SfcI CTRYAG 2 cut(s) 694, 774
SfuI TTCGAA 1 cut(s) 909
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 546, 659
SmlI CTYRAG 2 cut(s) 297, 571
SmoI CTYRAG 2 cut(s) 297, 571
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 8 cut(s) 18, 132, 193, 276, 355, 464, 889, 1024
SspMI CTAG 4 cut(s) 56, 503, 933, 1143
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 396, 582
StyI CCWWGG 4 cut(s) 238, 517, 615, 957
TaaI ACNGT 4 cut(s) 380, 658, 698, 987
TaiI ACGT 2 cut(s) 648, 729
TaqI TCGA 4 cut(s) 882, 909, 1007, 1015
TaqII GACCGA 1 cut(s) 319
TasI AATT 8 cut(s) 18, 132, 193, 276, 355, 464, 889, 1024
TatI WGTACW 5 cut(s) 414, 507, 538, 690, 745
TfiI GAWTC 6 cut(s) 222, 342, 798, 1012, 1106, 1121
Tru1I TTAA 3 cut(s) 120, 435, 572
Tru9I TTAA 3 cut(s) 120, 435, 572
TscAI CASTG 3 cut(s) 208, 818, 992
TseI GCWGC 3 cut(s) 491, 1061, 1064
TspDTI ATGAA 4 cut(s) 263, 651, 729, 807
TspRI CASTG 3 cut(s) 208, 818, 992
Vha464I CTTAAG 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 6 cut(s) 132, 193, 276, 355, 889, 1024
XceI RCATGY 1 cut(s) 927
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 2 cut(s) 132, 905
XspI CTAG 4 cut(s) 56, 503, 933, 1143
ZrmI AGTACT 3 cut(s) 509, 692, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.