pycom15g17780

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
12598763 .. 12599334
572 bp
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UTR
Exon/CDS
Intron
pycom15g17780.1

Sequence Viewer

Length: 252 bp
ATGAAATTTCGATATCCAAGGCAGATGACTCTTCCCTTCCTCCCGTTCTCAATTGCCATGGAGATTTTCCAAGTCGTGCAGCTAGTTGAATCACCTACTTATGGTGAAGATGTCGATGCCATAAGGAACATCACTACTATGTATCAAATAAAAAGAAACTGGGCTGGTGATCCTTGTGGACCTAAGGATTTCTCTTGGGAAGGTCCAGAACGCAACTATATCACTTCGCTTGCTCGGATTATTTCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

84

Amino Acids

9.69

Weight (kDa)

6.16

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 179, 203
AsuHPI GGTGA 3 cut(s) 84, 116, 179
AvaII GGWCC 2 cut(s) 179, 203
AxyI CCTNAGG 1 cut(s) 183
BbvI GCAGC 1 cut(s) 91
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 2 cut(s) 179, 203
BmgT120I GGNCC 2 cut(s) 179, 203
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 17, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 164
Bse21I CCTNAGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 17, 57
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 57
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 17, 57
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 2 cut(s) 17, 57
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 179, 203
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 82, 164
CviKI_1 RGCY 2 cut(s) 82, 164
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 17, 57
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 179, 203
Eco81I CCTNAGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 17, 57
ErhI CCWWGG 2 cut(s) 17, 57
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 59, 102, 122, 140, 219, 250
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 28, 89
HphI GGTGA 3 cut(s) 84, 116, 179
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 46, 194
HpyCH4V TGCA 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 145, 150, 219
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 83
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 23, 119
MfeI CAATTG 1 cut(s) 51
MluCI AATT 2 cut(s) 5, 51
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 137
MunI CAATTG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 57
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 179, 203
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 179, 203
SchI GAGTC 1 cut(s) 22
SetI ASST 4 cut(s) 84, 97, 184, 205
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 2 cut(s) 179, 203
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 5, 51
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 17, 57
TaqI TCGA 2 cut(s) 10, 114
TasI AATT 2 cut(s) 5, 51
TfiI GAWTC 1 cut(s) 89
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 179, 203
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.