Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013752.1

Orthogroup ID

OG0005945

Physical Location & Seq

Genomic Coordinates Reverse (-)

8315 .. 10993

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013752.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgtttacgaggtgcaacccaaaggttcttagcagtatcctcattcatgtactcaaactggagggccctctccatgtggcgcttcatcagggggcagctgacgtgaggcaatgctgcaggaaggcagcggtggtgagttttgacggagtagaaacctttaagaaagaaggaattcctattgcatcaaagaagtgccagtttagttatgatgaggttatagaaatcaccaaaaatttcaacacggaaatcggaaaaggaggattcggggctgtgtaccatggctacatgaaagatggcacccaagttgcagtcaaaatgctttctccatcatcaactcaaggaccgagggagttccaaactgaggctgagctcctgatgagaatccatcacagaaatttggcatcatttattggatactgtgatgatgctgataacctggctcttatatatgagtacatggctaatgggaaccttaaagattatctctcagttaaaagctcaggtatgacttgggaattgagacttcacatcgccatagatgctgcacaagggctagagtacttacaccatggatgcaagccacctattgtacacagagatgtgaagactgccaacattctcttaagtgaaaacctggaagctaagatagcagattttggtctttctaaggttttttccaatgataatgaaaccgacgtggaaaccacagttatgggcacagcaggttatttagacccagagtatgtctcagatttctcatttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

255

Amino Acids

28.31

Weight (kDa)

5.87

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29180 AT4G29180 AT4G29180 AT4G29450
fragaria_vesca	FvH4_1g06670 FvH4_1g06670
malus_domestica	MD02G1069800.v1.1 MD02G1071600.v1.1 MD02G1071800.v1.1
prunus_persica	Prupe.7G215900_v2.0.a1
pyrus_communis	pycom02g05560 pycom02g05570 pycom15g17770 pycom15g17780
rosa_chinensis	RchiOBHm_Chr2g0092421 RchiOBHm_Chr2g0092431
rosa_laevigata	RLG00000016310
rosa_multiflora	Rmu_co8303041.1_g000001 Rmu_sc0002503.1_g000001 Rmu_sc0002503.1_g000003 Rmu_sc0013752.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149130
rosa_rugosa	Rorug02G0026200.1
rosa_samantha	Rh2AG072000 Rh2BG072500 Rh2CG073700
rosa_wichuraiana	Rw2G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	171, 232, 394
AfaI	GTAC	5 cut(s)	51, 275, 455, 560, 591
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflII	CTTAAG	1 cut(s)	622
AgsI	TTSAA	1 cut(s)	238
AjiI	CACGTC	2 cut(s)	103, 697
AjnI	CCWGG	2 cut(s)	435, 633
AluBI	AGCT	4 cut(s)	98, 370, 498, 641
AluI	AGCT	4 cut(s)	98, 370, 498, 641
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	514, 751
AoxI	GGCC	1 cut(s)	64
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	4 cut(s)	95, 114, 125, 542
ApoI	RAATTY	3 cut(s)	171, 232, 394
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	64, 65, 341
AsuHPI	GGTGA	2 cut(s)	145, 217
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	2 cut(s)	68, 719
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	68, 372
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	101, 107, 137, 529
BccI	CCATC	3 cut(s)	287, 334, 393
BciT130I	CCWGG	2 cut(s)	437, 635
BciVI	GTATCC	2 cut(s)	47, 407
BcoDI	GTCTC	2 cut(s)	514, 751
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	115
BfoI	RGCGCY	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	2 cut(s)	47, 407
BisI	GCNGC	4 cut(s)	96, 115, 126, 543
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	4 cut(s)	97, 116, 127, 544
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	437, 635
Bme18I	GGWCC	1 cut(s)	341
BmgBI	CACGTC	2 cut(s)	103, 697
BmgT120I	GGNCC	3 cut(s)	64, 65, 341
BmiI	GGNNCC	3 cut(s)	66, 298, 470
BmrFI	CCNGG	2 cut(s)	437, 635
BmsI	GCATC	5 cut(s)	191, 410, 415, 529, 563
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	499
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	277, 344, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	63, 196
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	437, 635
BseDI	CCNNGG	3 cut(s)	277, 344, 568
BseGI	GGATG	1 cut(s)	578
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	5 cut(s)	351, 357, 501, 513, 762
BseNI	ACTGG	2 cut(s)	63, 196
BseSI	GKGCMC	2 cut(s)	68, 719
BseXI	GCAGC	4 cut(s)	101, 107, 137, 529
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	514, 751
BsnI	GGCC	1 cut(s)	66
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	68, 372, 719
Bsp1407I	TGTACA	1 cut(s)	589
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp19I	CCATGG	2 cut(s)	277, 568
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	5 cut(s)	352, 358, 500, 512, 761
BspLI	GGNNCC	3 cut(s)	66, 298, 470
BspMAI	CTGCAG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	63, 196
BssECI	CCNNGG	3 cut(s)	277, 344, 568
BssT1I	CCWWGG	2 cut(s)	277, 568
Bst2UI	CCWGG	2 cut(s)	437, 635
Bst4CI	ACNGT	2 cut(s)	419, 709
BstAFI	CTTAAG	1 cut(s)	622
BstAUI	TGTACA	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	8 cut(s)	29, 360, 366, 487, 499, 642, 666, 748
BstDSI	CCRYGG	2 cut(s)	277, 568
BstF5I	GGATG	1 cut(s)	578
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	2 cut(s)	514, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 647
BstNI	CCWGG	2 cut(s)	437, 635
BstSCI	CCNGG	2 cut(s)	435, 633
BstSFI	CTRYAG	1 cut(s)	115
BstSLI	GKGCMC	2 cut(s)	68, 719
BstV1I	GCAGC	4 cut(s)	101, 107, 137, 529
BstV2I	GAAGAC	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	712
BsuI	GTATCC	2 cut(s)	47, 407
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	277, 568
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	2 cut(s)	103, 697
BtsCI	GGATG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	578
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	3 cut(s)	64, 65, 341
Csp6I	GTAC	5 cut(s)	50, 274, 454, 559, 590
CviAII	CATG	6 cut(s)	47, 74, 278, 286, 457, 569
CviQI	GTAC	5 cut(s)	50, 274, 454, 559, 590
DdeI	CTNAG	8 cut(s)	29, 360, 366, 487, 499, 642, 666, 748
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	277, 568
Eco24I	GRGCYC	2 cut(s)	68, 372
Eco47I	GGWCC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoO109I	RGGNCCY	2 cut(s)	64, 65
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	435, 633
EcoT14I	CCWWGG	2 cut(s)	277, 568
EcoT38I	GRGCYC	2 cut(s)	68, 372
ErhI	CCWWGG	2 cut(s)	277, 568
FaeI	CATG	6 cut(s)	50, 77, 281, 289, 460, 572
FatI	CATG	6 cut(s)	46, 73, 277, 285, 456, 568
Fnu4HI	GCNGC	4 cut(s)	96, 115, 126, 543
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	2 cut(s)	68, 372
Fsp4HI	GCNGC	4 cut(s)	96, 115, 126, 543
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	96, 115, 126, 543
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	6 cut(s)	50, 77, 281, 289, 460, 572
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	2 cut(s)	261, 381
HphI	GGTGA	2 cut(s)	145, 217
Hpy166II	GTNNAC	3 cut(s)	6, 274, 592
Hpy188I	TCNGA	2 cut(s)	251, 751
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	3 cut(s)	6, 274, 592
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	115, 161
HpyCH4III	ACNGT	2 cut(s)	419, 709
HpyCH4IV	ACGT	2 cut(s)	102, 696
HpyCH4V	TGCA	6 cut(s)	15, 117, 182, 308, 545, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 647
HpyF3I	CTNAG	8 cut(s)	29, 360, 366, 487, 499, 642, 666, 748
HpySE526I	ACGT	2 cut(s)	102, 696
Hsp92II	CATG	6 cut(s)	50, 77, 281, 289, 460, 572
HspAI	GCGC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	375
Lsp1109I	GCAGC	4 cut(s)	101, 107, 137, 529
LweI	GCATC	5 cut(s)	191, 410, 415, 529, 563
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	102, 696
MboII	GAAGA	1 cut(s)	616
MhlI	GDGCHC	3 cut(s)	68, 372, 719
MluCI	AATT	4 cut(s)	171, 232, 394, 515
MnlI	CCTC	9 cut(s)	3, 50, 55, 78, 99, 205, 251, 339, 355
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	4 cut(s)	159, 474, 492, 623
MslI	CAYNNNNRTG	2 cut(s)	597, 710
MspA1I	CMGCKG	2 cut(s)	98, 128
MspCI	CTTAAG	1 cut(s)	622
MspR9I	CCNGG	2 cut(s)	437, 635
MvaI	CCWGG	2 cut(s)	437, 635
MwoI	GCNNNNNNNGC	2 cut(s)	539, 647
NcoI	CCATGG	2 cut(s)	277, 568
NlaIII	CATG	6 cut(s)	50, 77, 281, 289, 460, 572
NlaIV	GGNNCC	3 cut(s)	66, 298, 470
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	261, 381
PkrI	GCNGC	4 cut(s)	97, 116, 127, 544
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	435, 633
PspGI	CCWGG	2 cut(s)	435, 633
PspN4I	GGNNCC	3 cut(s)	66, 298, 470
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	64, 65, 341
PstI	CTGCAG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	5 cut(s)	51, 275, 455, 560, 591
RsaNI	GTAC	5 cut(s)	50, 274, 454, 559, 590
RseI	CAYNNNNRTG	2 cut(s)	597, 710
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	159, 474, 492, 623
SatI	GCNGC	4 cut(s)	96, 115, 126, 543
Sau96I	GGNCC	3 cut(s)	64, 65, 341
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	437, 635
SduI	GDGCHC	3 cut(s)	68, 372, 719
SfaNI	GCATC	5 cut(s)	191, 410, 415, 529, 563
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	597, 710
SmlI	CTYRAG	2 cut(s)	336, 622
SmoI	CTYRAG	2 cut(s)	336, 622
Sse9I	AATT	4 cut(s)	171, 232, 394, 515
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	554
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	435, 633
StyI	CCWWGG	2 cut(s)	277, 568
TaaI	ACNGT	2 cut(s)	419, 709
TaiI	ACGT	2 cut(s)	105, 699
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	4 cut(s)	171, 232, 394, 515
TatI	WGTACW	4 cut(s)	49, 453, 558, 589
TfiI	GAWTC	2 cut(s)	261, 381
Tru1I	TTAA	4 cut(s)	159, 474, 492, 623
Tru9I	TTAA	4 cut(s)	159, 474, 492, 623
TseI	GCWGC	4 cut(s)	95, 114, 125, 542
TspDTI	ATGAA	5 cut(s)	35, 74, 302, 702, 752
TspGWI	ACGGA	2 cut(s)	159, 257
Vha464I	CTTAAG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	3 cut(s)	171, 232, 394
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.