pycom15g17770

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005945
Physical Location & Seq
Reverse (-)
12598282 .. 12598638
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17770.1

Sequence Viewer

Length: 357 bp
ATGGAAACTACAATTAATGGAGAAAACAAGCTGCCTGAATTTGATCTGTATTTCGGCGTCAACTTTTGGTTAAGGGTGAGGTGTGGCAATGCTTTAGATATTGTTACAAAGGAGATTATTGGTTTTGCAGAATCAAATACCATGGATGTTTGCCTAATAAATAAAGGGTTGGGAGCTCCTTTCATTTCGGCGTCGGAACTTAGACCCCTTAATAGCTCAACTTATGGTACTGAATTTGGGACATCTGCATCATTATTACTCGCTGAAAGATCGGCCATCGGTTCGGGAATGGAACAGGTCGATATGGAGACGATGTTTATGATCATATCGCATCATAAATTTTATACAAGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.04

Weight (kDa)

4.74

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 6 - 96 9.9e-24 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 38, 233, 338
AcyI GRCGYC 2 cut(s) 57, 191
AfaI GTAC 1 cut(s) 229
AluBI AGCT 3 cut(s) 31, 176, 216
AluI AGCT 3 cut(s) 31, 176, 216
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 3 cut(s) 38, 233, 338
AseI ATTAAT 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 88
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 284
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 302
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmsI GCATC 2 cut(s) 257, 340
BsaHI GRCGYC 2 cut(s) 57, 191
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse3DI GCAATG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 43, 269, 321
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 43, 269, 321
BssNI GRCGYC 2 cut(s) 57, 191
BssT1I CCWWGG 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 57, 191
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 46, 272, 324
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 43, 269, 321
BstV1I GCAGC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 151
CseI GACGC 2 cut(s) 46, 180
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 31, 176, 216, 275, 351
CviKI_1 RGCY 5 cut(s) 31, 176, 216, 275, 351
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 200
DpnI GATC 3 cut(s) 45, 271, 323
DpnII GATC 3 cut(s) 43, 269, 321
EaeI YGGCCR 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 143, 225, 305, 320, 326, 336, 345
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 141
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 275
HgaI GACGC 2 cut(s) 46, 180
Hin1I GRCGYC 2 cut(s) 57, 191
Hin1II CATG 1 cut(s) 145
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 128, 248
HpyF3I CTNAG 1 cut(s) 200
Hsp92I GRCGYC 2 cut(s) 57, 191
Hsp92II CATG 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 3 cut(s) 43, 269, 321
LmnI GCTCC 2 cut(s) 173, 181
LpnPI CCDG 2 cut(s) 48, 281
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 257, 340
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 45, 271, 323
MboI GATC 3 cut(s) 43, 269, 321
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 12, 38, 233, 338
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 1 cut(s) 72
MseI TTAA 3 cut(s) 15, 71, 210
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 43, 269, 321
NlaIII CATG 1 cut(s) 145
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 33
PshBI ATTAAT 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 3 cut(s) 15, 71, 210
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 3 cut(s) 43, 269, 321
SduI GDGCHC 1 cut(s) 178
SetI ASST 5 cut(s) 33, 83, 178, 218, 300
SfaNI GCATC 2 cut(s) 257, 340
SgeI CNNG 6 cut(s) 40, 47, 154, 272, 297, 308
Sse9I AATT 4 cut(s) 12, 38, 233, 338
SstI GAGCTC 1 cut(s) 178
StyI CCWWGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 300
TasI AATT 4 cut(s) 12, 38, 233, 338
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 15, 71, 210
Tru9I TTAA 3 cut(s) 15, 71, 210
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 172
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 3 cut(s) 38, 233, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.