Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005157

Physical Location & Seq

Genomic Coordinates Forward (+)

7563259 .. 7563711

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1095900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTCTGTTTAGCTCATCGGTTTCGAGGTCTCTGCTTCTGTTTACGAGGCCAATTCGGATATTTGGTCTTTTGGTGATATATTCGCACAATGGGAATGAAAACAATGGGGATATTTGGTCTTTTGGGATCACGGCACTGGAATTGGCTCGTGGCGGCCTTCCGCTGTCTAACATTCTGCCATCAAAGTCTCTGCTTCTGAAGATAACTAAAAGGTTCTGGCTTTCAGATTACGAAACCCAGAACAAAGCTTTCAAGAACAAGAAGCTCTCTAAGGCTTTCAAAGACTTGGTGGGATCTTGCCTCGATCAAGACCAGGGGAAGAGACCTATTGCAGAGAGGCTGCTAAGGCACTATTTTTTCAAGAACTGCAAGGGAGGAGATTCTTTGATGATGAATGTGCTTCTGGGTTTGCGAGCGTTGAAGATAGGTTCAAGAGGAAAAACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

10.36

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 121	1.4e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14480
fragaria_vesca	FvH4_4g03000
malus_domestica	MD01G1106400.v1.1 MD01G1106800.v1.1 MD02G1095900.v1.1 MD04G1063400.v1.1 MD04G1063500.v1.1 MD07G1020600.v1.1 MD07G1020800.v1.1 MD16G1212100.v1.1
prunus_persica	Prupe.1G031800_v2.0.a1 Prupe.1G033800_v2.0.a1 Prupe.1G034000_v2.0.a1 Prupe.4G193100_v2.0.a1
pyrus_communis	pycom01g13320 pycom01g13330 pycom01g13350 pycom07g01600 pycom16g17810
rosa_chinensis	RchiOBHm_Chr4g0391181
rosa_laevigata	RLG00000009879
rosa_multiflora	Rmu_co8201760.1_g000001 Rmu_sc0000040.1_g000009
rosa_roxburghii	Rroxscaffold_5G00336980
rosa_rugosa	Rorug03G0334900
rosa_samantha	Rh4AG035700 Rh4BG030700 Rh4CG039000 Rh4DG033200
rosa_wichuraiana	Rw4G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	156, 164
AclWI	GGATC	2 cut(s)	137, 304
AcuI	CTGAAG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	256, 283, 364, 424, 435
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	15, 251, 268
AluI	AGCT	3 cut(s)	15, 251, 268
Alw26I	GTCTC	3 cut(s)	36, 195, 319
AlwI	GGATC	2 cut(s)	137, 304
AoxI	GGCC	2 cut(s)	50, 157
ApeKI	GCWGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	88
BauI	CACGAG	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	3 cut(s)	36, 195, 319
BisI	GCNGC	2 cut(s)	157, 344
BlsI	GCNGC	2 cut(s)	158, 345
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	36, 319
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	52, 159
BsmAI	GTCTC	3 cut(s)	36, 195, 319
BsnI	GGCC	2 cut(s)	52, 159
Bso31I	GGTCTC	2 cut(s)	36, 319
Bsp143I	GATC	3 cut(s)	129, 296, 307
BspACI	CCGC	2 cut(s)	156, 164
BspANI	GGCC	2 cut(s)	52, 159
BspPI	GGATC	2 cut(s)	137, 304
BspTNI	GGTCTC	2 cut(s)	36, 319
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	129, 296, 307
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	273, 347
BstKTI	GATC	3 cut(s)	132, 299, 310
BstMAI	GTCTC	3 cut(s)	36, 195, 319
BstMBI	GATC	3 cut(s)	129, 296, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	52, 159
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	417
CviJI	RGCY	9 cut(s)	15, 52, 149, 159, 223, 251, 268, 278, 343
CviKI_1	RGCY	9 cut(s)	15, 52, 149, 159, 223, 251, 268, 278, 343
DdeI	CTNAG	2 cut(s)	273, 347
DpnI	GATC	3 cut(s)	131, 298, 309
DpnII	GATC	3 cut(s)	129, 296, 307
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco31I	GGTCTC	2 cut(s)	36, 319
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	315
FaiI	YATR	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	157, 344
Fsp4HI	GCNGC	2 cut(s)	157, 344
GluI	GCNGC	2 cut(s)	157, 344
HaeIII	GGCC	2 cut(s)	52, 159
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	60, 201, 229
Hpy188III	TCNNGA	4 cut(s)	256, 311, 364, 435
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	335, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	273, 347
Kzo9I	GATC	3 cut(s)	129, 296, 307
LpnPI	CCDG	6 cut(s)	125, 205, 254, 302, 329, 392
Lsp1109I	GCAGC	1 cut(s)	330
MalI	GATC	3 cut(s)	131, 298, 309
MboI	GATC	3 cut(s)	129, 296, 307
MboII	GAAGA	3 cut(s)	214, 334, 436
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	2 cut(s)	54, 143
MnlI	CCTC	6 cut(s)	21, 42, 314, 333, 371, 431
MspA1I	CMGCKG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	3 cut(s)	129, 296, 307
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	158, 345
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	296
SatI	GCNGC	2 cut(s)	157, 344
Sau3AI	GATC	3 cut(s)	129, 296, 307
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	17, 32, 218, 253, 270, 331, 433
Sse9I	AATT	2 cut(s)	54, 143
SsiI	CCGC	2 cut(s)	156, 164
StyD4I	CCNGG	1 cut(s)	315
TaqI	TCGA	2 cut(s)	26, 306
TasI	AATT	2 cut(s)	54, 143
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	114, 410
TspRI	CASTG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.