Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005157

Physical Location & Seq

Genomic Coordinates Forward (+)

20070720 .. 20071229

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1212100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGTCCGTGTAGCTCGCTGATTTCGGGGTCTCTGCTTTTGGTTACGAGGTCAATTCAATTGCATACTTGGCTAACTGACATCGCTAGAACACTATACTGGATGGAATTTGAGGTGATATATTTGCACAATGGGAATCAAAACAATGAGGATATTTGGTCGTTTAGGATCACGGCGCTGGAATTGGCTTGTGGCAGCCTTCCGCTGTCTAACCTTCTGCCGTCAAAGTCTCTACTTTTGAAGATAACTAAAAGGTTCTGGTTTTCAGATTATGAAACCCATAACAAAGCTTTCAAGAACAAGAAGTTTTCTGAGGCTTTCAAAGACTTGGTGGGTTCTTGCCTCAATCAAGACCAGGGGAAGAGATCGATGGCAGAGAGATTGCTGAGGAACTTGTTTTTCATAAACTGCAGGGGAGGAGATTCTTTAATGATGAATGTGCTTCTGGGTTTCCCGAGTGTTGAAGAGAGGTTCAAGAAGAAGATGAAGATGATGAAGGGGAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

170

Amino Acids

19.55

Weight (kDa)

9.48

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 134	9.8e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14480
fragaria_vesca	FvH4_4g03000
malus_domestica	MD01G1106400.v1.1 MD01G1106800.v1.1 MD02G1095900.v1.1 MD04G1063400.v1.1 MD04G1063500.v1.1 MD07G1020600.v1.1 MD07G1020800.v1.1 MD16G1212100.v1.1
prunus_persica	Prupe.1G031800_v2.0.a1 Prupe.1G033800_v2.0.a1 Prupe.1G034000_v2.0.a1 Prupe.4G193100_v2.0.a1
pyrus_communis	pycom01g13320 pycom01g13330 pycom01g13350 pycom07g01600 pycom16g17810
rosa_chinensis	RchiOBHm_Chr4g0391181
rosa_laevigata	RLG00000009879
rosa_multiflora	Rmu_co8201760.1_g000001 Rmu_sc0000040.1_g000009
rosa_roxburghii	Rroxscaffold_5G00336980
rosa_rugosa	Rorug03G0334900
rosa_samantha	Rh4AG035700 Rh4BG030700 Rh4CG039000 Rh4DG033200
rosa_wichuraiana	Rw4G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	107
AgsI	TTSAA	6 cut(s)	59, 241, 295, 322, 464, 475
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	15, 290, 504
AluI	AGCT	3 cut(s)	15, 290, 504
Alw26I	GTCTC	2 cut(s)	36, 234
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	97, 364
BceAI	ACGGC	2 cut(s)	189, 205
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	36, 234
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	303, 377
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	36, 234
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	168, 365
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	304, 378
BspDI	ATCGAT	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	168, 365
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	2 cut(s)	356, 459
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	312, 386
BstF5I	GGATG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	171, 368
BstMAI	GTCTC	2 cut(s)	36, 234
BstMBI	GATC	2 cut(s)	168, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	368
BsuTUI	ATCGAT	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	368
CviJI	RGCY	7 cut(s)	15, 73, 188, 198, 290, 317, 504
CviKI_1	RGCY	7 cut(s)	15, 73, 188, 198, 290, 317, 504
DdeI	CTNAG	2 cut(s)	312, 386
DpnI	GATC	2 cut(s)	170, 367
DpnII	GATC	2 cut(s)	168, 365
Eam1104I	CTCTTC	2 cut(s)	356, 459
EarI	CTCTTC	2 cut(s)	356, 459
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	5
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	354
FaiI	YATR	6 cut(s)	66, 97, 121, 273, 282, 404
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	179
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	136, 422
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	268, 313
Hpy188III	TCNNGA	4 cut(s)	295, 350, 454, 475
HpyAV	CCTTC	3 cut(s)	209, 224, 490
HpyCH4V	TGCA	3 cut(s)	64, 127, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	312, 386
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	168, 365
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	8 cut(s)	85, 164, 244, 341, 368, 397, 431, 490
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	170, 367
MboI	GATC	2 cut(s)	168, 365
MboII	GAAGA	6 cut(s)	253, 373, 476, 490, 493, 499
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	4 cut(s)	54, 59, 107, 182
MnlI	CCTC	8 cut(s)	42, 106, 142, 307, 353, 381, 410, 462
MseI	TTAA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	168, 365
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	136, 422
PkrI	GCNGC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	168, 365
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	8 cut(s)	17, 53, 117, 216, 257, 292, 473, 506
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	4 cut(s)	54, 59, 107, 182
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	354
TaqI	TCGA	1 cut(s)	368
TasI	AATT	4 cut(s)	54, 59, 107, 182
TfiI	GAWTC	2 cut(s)	136, 422
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	5 cut(s)	288, 391, 449, 500, 509
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.