Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005157

Physical Location & Seq

Genomic Coordinates Forward (+)

14054183 .. 14055006

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTAAGCCGTTCATGTCCGCTAGTTCTCTGCAATTCATAATCTTCTCTGCTTTACCAGAAAGATTGCTAGAGCCCTGCATTGCTATCGTTCTCAAAGAGACGTTAAACGTCATGTCGTATCTTCACGATCAGGGCCACCTCCACAGAGACATCAAGACCGAAAATATATTGATTGATTCTGATGGGTCCGCCAATTCAGCTGCGGAGTCGTCTACTCGGCTAACTGACATCGCTAGAACACTGTACTGGATGGAACCTGAGGTGATATATTCGCACAACAATGCCGATATTTGGTCGTTTGGGATCACAGCGCTGGAATTGGCTCGTGGCGGCCTTCTGCCGTCAAAGTCTCTGCTTCTGAAGATAACTAAAATGTTATGGTTTTCAGATTACGAAACCCAGAACAAAGCTTTCAAGAACAAGAAGTTCTCTAAGGCTTTCAAAGACTTGGTGGGTTCTTGCCTCGATCAAGACCAGGGGAAGAGACCGATGGCAGAGAGGCTGCTGAGGCACTCATTTTTCAAGAATTGCAGGGGAGGAGATTCTTTGATGATGAATGTGCTTCTGGGTTTGCCGAGCGTTGAAGAGAGGGCTAGGGATATGAGATTTAGCCGCGGGAAATTCAATGAGGATGAGTTTGATATCGACCCGATTTTTCCAACTCAATCTTCTTGCAGCGATGTGGTTTTTTCGACTGAGTCATTCAATGATTCAGTTGTGAAAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

245

Amino Acids

27.68

Weight (kDa)

5.99

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14480
fragaria_vesca	FvH4_4g03000
malus_domestica	MD01G1106400.v1.1 MD01G1106800.v1.1 MD02G1095900.v1.1 MD04G1063400.v1.1 MD04G1063500.v1.1 MD07G1020600.v1.1 MD07G1020800.v1.1 MD16G1212100.v1.1
prunus_persica	Prupe.1G031800_v2.0.a1 Prupe.1G033800_v2.0.a1 Prupe.1G034000_v2.0.a1 Prupe.4G193100_v2.0.a1
pyrus_communis	pycom01g13320 pycom01g13330 pycom01g13350 pycom07g01600 pycom16g17810
rosa_chinensis	RchiOBHm_Chr4g0391181
rosa_laevigata	RLG00000009879
rosa_multiflora	Rmu_co8201760.1_g000001 Rmu_sc0000040.1_g000009
rosa_roxburghii	Rroxscaffold_5G00336980
rosa_rugosa	Rorug03G0334900
rosa_samantha	Rh4AG035700 Rh4BG030700 Rh4CG039000 Rh4DG033200
rosa_wichuraiana	Rw4G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	618
AciI	CCGC	6 cut(s)	21, 192, 206, 333, 616, 618
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	6 cut(s)	418, 445, 526, 587, 628, 709
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AluBI	AGCT	2 cut(s)	203, 413
AluI	AGCT	2 cut(s)	203, 413
Alw26I	GTCTC	4 cut(s)	95, 144, 357, 481
AlwI	GGATC	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	2 cut(s)	136, 334
ApeKI	GCWGC	3 cut(s)	203, 505, 678
ApoI	RAATTY	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	136, 189
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	190, 492, 690
BccI	CCATC	3 cut(s)	179, 247, 487
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	4 cut(s)	95, 144, 357, 481
BfaI	CTAG	4 cut(s)	24, 71, 237, 597
BfoI	RGCGCY	1 cut(s)	317
BisI	GCNGC	5 cut(s)	204, 334, 506, 616, 679
BlsI	GCNGC	5 cut(s)	205, 335, 507, 617, 680
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	136, 189
BmiI	GGNNCC	2 cut(s)	190, 258
BmrFI	CCNGG	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	478, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	478, 616
BseGI	GGATG	2 cut(s)	258, 640
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	252, 500, 690
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	190, 492, 690
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	138, 336
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	4 cut(s)	95, 144, 357, 481
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	138, 336
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	130, 306, 469
BspACI	CCGC	6 cut(s)	21, 192, 206, 333, 616, 618
BspANI	GGCC	2 cut(s)	138, 336
BspCNI	CTCAG	3 cut(s)	253, 501, 691
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	190, 258
BspPI	GGATC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	478, 616
BssMI	GATC	3 cut(s)	130, 306, 469
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	479, 582
BstDEI	CTNAG	4 cut(s)	261, 435, 509, 699
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	258, 640
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	3 cut(s)	133, 309, 472
BstMAI	GTCTC	4 cut(s)	95, 144, 357, 481
BstMBI	GATC	3 cut(s)	130, 306, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 511
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	190, 492, 690
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	138, 336
BtgI	CCRYGG	1 cut(s)	616
BtgZI	GCGATG	2 cut(s)	217, 696
BtsCI	GGATG	2 cut(s)	258, 640
BtsIMutI	CAGTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	136, 189
Cfr42I	CCGCGG	1 cut(s)	619
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	16, 115
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	4 cut(s)	261, 435, 509, 699
DpnI	GATC	3 cut(s)	132, 308, 471
DpnII	GATC	3 cut(s)	130, 306, 469
Eam1104I	CTCTTC	2 cut(s)	479, 582
EarI	CTCTTC	2 cut(s)	479, 582
EciI	GGCGGA	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	481
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	189
Eco47III	AGCGCT	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	19, 118
FaiI	YATR	8 cut(s)	17, 41, 116, 170, 271, 382, 605, 733
FatI	CATG	2 cut(s)	15, 114
FauI	CCCGC	1 cut(s)	611
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	5 cut(s)	204, 334, 506, 616, 679
FokI	GGATG	2 cut(s)	265, 647
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	5 cut(s)	204, 334, 506, 616, 679
FspBI	CTAG	4 cut(s)	24, 71, 237, 597
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	204, 334, 506, 616, 679
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	138, 336
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	19, 118
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	179, 209, 545, 701, 713
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	184, 363, 391
Hpy188III	TCNNGA	5 cut(s)	128, 157, 418, 473, 526
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	2 cut(s)	104, 111
HpyCH4V	TGCA	4 cut(s)	34, 81, 534, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 511
HpyF3I	CTNAG	4 cut(s)	261, 435, 509, 699
HpySE526I	ACGT	2 cut(s)	104, 111
Hsp92II	CATG	2 cut(s)	19, 118
HspAI	GCGC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	130, 306, 469
Lsp1109I	GCAGC	3 cut(s)	190, 492, 690
MaeI	CTAG	4 cut(s)	24, 71, 237, 597
MaeII	ACGT	2 cut(s)	104, 111
MalI	GATC	3 cut(s)	132, 308, 471
MboI	GATC	3 cut(s)	130, 306, 469
MboII	GAAGA	6 cut(s)	37, 116, 376, 496, 599, 663
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	5 cut(s)	35, 196, 320, 529, 623
MlyI	GAGTC	2 cut(s)	218, 710
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	8 cut(s)	152, 256, 476, 495, 504, 533, 585, 625
MseI	TTAA	2 cut(s)	6, 107
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	203, 618
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	200, 511
NdeII	GATC	3 cut(s)	130, 306, 469
NlaIII	CATG	2 cut(s)	19, 118
NlaIV	GGNNCC	2 cut(s)	190, 258
NmeAIII	GCCGAG	2 cut(s)	199, 603
PfeI	GAWTC	3 cut(s)	179, 545, 713
PflFI	GACNNNGTC	1 cut(s)	700
PkrI	GCNGC	5 cut(s)	205, 335, 507, 617, 680
PleI	GAGTC	2 cut(s)	217, 709
PpsI	GAGTC	2 cut(s)	217, 709
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	190, 258
PspPI	GGNCC	2 cut(s)	136, 189
PsyI	GACNNNGTC	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	6, 107
SatI	GCNGC	5 cut(s)	204, 334, 506, 616, 679
Sau3AI	GATC	3 cut(s)	130, 306, 469
Sau96I	GGNCC	2 cut(s)	136, 189
SchI	GAGTC	2 cut(s)	218, 710
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	107, 114, 144, 205, 262, 267, 415
Sfr303I	CCGCGG	1 cut(s)	619
SgrBI	CCGCGG	1 cut(s)	619
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	5 cut(s)	35, 196, 320, 529, 623
SsiI	CCGC	6 cut(s)	21, 192, 206, 333, 616, 618
SspMI	CTAG	4 cut(s)	24, 71, 237, 597
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	2 cut(s)	107, 114
TaqI	TCGA	3 cut(s)	468, 648, 695
TaqII	GACCGA	2 cut(s)	176, 505
TasI	AATT	5 cut(s)	35, 196, 320, 529, 623
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	336, 618
TfiI	GAWTC	3 cut(s)	179, 545, 713
Tru1I	TTAA	2 cut(s)	6, 107
Tru9I	TTAA	2 cut(s)	6, 107
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	3 cut(s)	203, 505, 678
TspDTI	ATGAA	3 cut(s)	4, 28, 572
TspRI	CASTG	1 cut(s)	249
Tth111I	GACNNNGTC	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	4 cut(s)	24, 71, 237, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.