Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201760.1

Orthogroup ID

OG0005157

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 701

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

atgcccttcatgtccgtcggctccatccagtccgtcatctcctcctccttcccaaacggcatgtcggagccctgcattgccgtcatcctcaaggaaaccctaaacgccctgtcgtatctccacgaccagggcaacctccaccgcgacatcaaggccagcaacatcctcatggactccgacggctcggtaaagctcgccgacttcggcgtctccgcctcggtctacgagcccaactacctcaactccaactcctcctccaaaacgtcgtcgtttcgcctcaccgacgtcgccggcacgccgtactggatggctccggaagtcgtgcactcgcacaacggctacggctgcaaagccgacatctggtctctagggatcaccgccctagagctggcccacggcgggccgccgctgtcgcatctcccgccgtcgaagtcgctgcttctgcggatcacgaagcggttcaacttctcggattacgagacgcgcggcggtacggacaagaacaagagcaagaagttctcgaagagcttcaaggacttggtaggcctgtgtttggaccaggacccgaacaagaggcccagcgccgagaagcttctgaagcactcgtttttcaagaactgtaaaggggttgattttctggccaagaatctgctgaatgggctgcctagtgtggaagagaggtttagggttttgggtggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

233

Amino Acids

25.5

Weight (kDa)

8.96

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14480
fragaria_vesca	FvH4_4g03000
malus_domestica	MD01G1106400.v1.1 MD01G1106800.v1.1 MD02G1095900.v1.1 MD04G1063400.v1.1 MD04G1063500.v1.1 MD07G1020600.v1.1 MD07G1020800.v1.1 MD16G1212100.v1.1
prunus_persica	Prupe.1G031800_v2.0.a1 Prupe.1G033800_v2.0.a1 Prupe.1G034000_v2.0.a1 Prupe.4G193100_v2.0.a1
pyrus_communis	pycom01g13320 pycom01g13330 pycom01g13350 pycom07g01600 pycom16g17810
rosa_chinensis	RchiOBHm_Chr4g0391181
rosa_laevigata	RLG00000009879
rosa_multiflora	Rmu_co8201760.1_g000001 Rmu_sc0000040.1_g000009
rosa_roxburghii	Rroxscaffold_5G00336980
rosa_rugosa	Rorug03G0334900
rosa_samantha	Rh4AG035700 Rh4BG030700 Rh4CG039000 Rh4DG033200
rosa_wichuraiana	Rw4G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	3 cut(s)	144, 484, 486
AccIII	TCCGGA	1 cut(s)	313
AclWI	GGATC	2 cut(s)	380, 455
AcoI	YGGCCR	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	2 cut(s)	207, 285
AfaI	GTAC	2 cut(s)	302, 493
AfiI	CCNNNNNNNGG	5 cut(s)	127, 360, 388, 399, 553
AgsI	TTSAA	3 cut(s)	463, 532, 613
AhdI	GACNNNNNGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	126, 558
AluBI	AGCT	4 cut(s)	193, 388, 528, 592
AluI	AGCT	4 cut(s)	193, 388, 528, 592
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	214, 369, 473
Alw44I	GTGCAC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	380, 455
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	6 cut(s)	153, 390, 401, 544, 575, 639
ApaLI	GTGCAC	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	345, 436, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	2 cut(s)	458, 527
AspLEI	GCGC	2 cut(s)	486, 584
AspS9I	GGNCC	5 cut(s)	391, 401, 556, 562, 576
AsuHPI	GGTGA	2 cut(s)	271, 367
AvaII	GGWCC	2 cut(s)	556, 562
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	72, 231
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	332, 423, 648
BccI	CCATC	2 cut(s)	32, 301
BceAI	ACGGC	8 cut(s)	65, 73, 196, 283, 352, 358, 409, 412
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	2 cut(s)	128, 560
BcoDI	GTCTC	3 cut(s)	214, 369, 473
BfaI	CTAG	3 cut(s)	368, 383, 666
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	6 cut(s)	346, 404, 407, 437, 487, 662
BlsI	GCNGC	6 cut(s)	347, 405, 408, 438, 488, 663
Bme1390I	CCNGG	2 cut(s)	128, 560
Bme18I	GGWCC	2 cut(s)	556, 562
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgT120I	GGNCC	5 cut(s)	391, 401, 556, 562, 576
BmiI	GGNNCC	4 cut(s)	22, 69, 312, 564
BmrFI	CCNGG	2 cut(s)	128, 560
BmsI	GCATC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	207, 285
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	127, 216, 394
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	6 cut(s)	227, 233, 239, 257, 263, 269
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 360, 388, 399, 553
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	28, 308
Bse3DI	GCAATG	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	128, 560
BseDI	CCNNGG	3 cut(s)	127, 216, 394
BseGI	GGATG	4 cut(s)	24, 84, 162, 312
BseLI	CCNNNNNNNGG	5 cut(s)	127, 360, 388, 399, 553
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	28, 308
BseRI	GAGGAG	4 cut(s)	31, 34, 241, 244
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	332, 423, 648
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	3 cut(s)	144, 484, 486
BshFI	GGCC	6 cut(s)	155, 392, 403, 546, 577, 641
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	291, 314
BslI	CCNNNNNNNGG	5 cut(s)	127, 360, 388, 399, 553
BsmAI	GTCTC	3 cut(s)	214, 369, 473
BsmBI	CGTCTC	2 cut(s)	214, 473
BsnI	GGCC	6 cut(s)	155, 392, 403, 546, 577, 641
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	72, 231, 327
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	372, 447
BspANI	GGCC	6 cut(s)	155, 392, 403, 546, 577, 641
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	144, 484, 486
BspLI	GGNNCC	4 cut(s)	22, 69, 312, 564
BspPI	GGATC	2 cut(s)	380, 455
BspQI	GCTCTTC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	28, 308
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	127, 216, 394
BssMI	GATC	2 cut(s)	372, 447
BssNI	GRCGYC	2 cut(s)	207, 285
Bst2UI	CCWGG	2 cut(s)	128, 560
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	2 cut(s)	518, 669
BstACI	GRCGYC	2 cut(s)	207, 285
BstC8I	GCNNGC	6 cut(s)	157, 195, 292, 296, 390, 401
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	24, 84, 162, 312
BstFNI	CGCG	3 cut(s)	144, 484, 486
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	486, 584
BstKTI	GATC	2 cut(s)	375, 450
BstMAI	GTCTC	3 cut(s)	214, 369, 473
BstMBI	GATC	2 cut(s)	372, 447
BstMWI	GCNNNNNNNGC	6 cut(s)	345, 412, 421, 442, 598, 658
BstNI	CCWGG	2 cut(s)	128, 560
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	126, 558
BstSLI	GKGCMC	1 cut(s)	327
BstUI	CGCG	3 cut(s)	144, 484, 486
BstV1I	GCAGC	3 cut(s)	332, 423, 648
BsuRI	GGCC	6 cut(s)	155, 392, 403, 546, 577, 641
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	24, 84, 162, 312
Cac8I	GCNNGC	6 cut(s)	157, 195, 292, 296, 390, 401
CfoI	GCGC	2 cut(s)	486, 584
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	5 cut(s)	391, 401, 556, 562, 576
CseI	GACGC	2 cut(s)	196, 490
Csp6I	GTAC	2 cut(s)	301, 492
CviAII	CATG	3 cut(s)	10, 61, 169
CviQI	GTAC	2 cut(s)	301, 492
DpnI	GATC	2 cut(s)	374, 449
DpnII	GATC	2 cut(s)	372, 447
DrdI	GACNNNNNNGTC	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	518, 669
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	2 cut(s)	518, 669
EciI	GGCGGA	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	72, 231
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	556, 562
Eco57I	CTGAAG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	126, 558
EcoT38I	GRGCYC	2 cut(s)	72, 231
Esp3I	CGTCTC	2 cut(s)	214, 473
FaeI	CATG	3 cut(s)	13, 64, 172
FaiI	YATR	3 cut(s)	11, 62, 170
FatI	CATG	3 cut(s)	9, 60, 168
FauI	CCCGC	2 cut(s)	392, 429
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	346, 404, 407, 437, 487, 662
FokI	GGATG	4 cut(s)	11, 71, 149, 319
FriOI	GRGCYC	2 cut(s)	72, 231
Fsp4HI	GCNGC	6 cut(s)	346, 404, 407, 437, 487, 662
FspBI	CTAG	3 cut(s)	368, 383, 666
GlaI	GCGC	2 cut(s)	485, 583
GluI	GCNGC	6 cut(s)	346, 404, 407, 437, 487, 662
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	6 cut(s)	155, 392, 403, 546, 577, 641
HapII	CCGG	2 cut(s)	291, 314
HgaI	GACGC	2 cut(s)	196, 490
HhaI	GCGC	2 cut(s)	486, 584
Hin1I	GRCGYC	2 cut(s)	207, 285
Hin1II	CATG	3 cut(s)	13, 64, 172
Hin6I	GCGC	2 cut(s)	484, 582
HinP1I	GCGC	2 cut(s)	484, 582
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	173, 646
HpaII	CCGG	2 cut(s)	291, 314
HphI	GGTGA	2 cut(s)	271, 367
Hpy166II	GTNNAC	2 cut(s)	223, 325
Hpy188I	TCNGA	4 cut(s)	67, 178, 472, 597
Hpy188III	TCNNGA	4 cut(s)	314, 451, 520, 613
Hpy8I	GTNNAC	2 cut(s)	223, 325
Hpy99I	CGWCG	7 cut(s)	20, 182, 268, 271, 287, 290, 430
HpyAV	CCTTC	2 cut(s)	16, 58
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	2 cut(s)	263, 285
HpyCH4V	TGCA	3 cut(s)	75, 325, 348
HpyF10VI	GCNNNNNNNGC	6 cut(s)	345, 412, 421, 442, 598, 658
HpySE526I	ACGT	2 cut(s)	263, 285
Hsp92I	GRCGYC	2 cut(s)	207, 285
Hsp92II	CATG	3 cut(s)	13, 64, 172
HspAI	GCGC	2 cut(s)	484, 582
Kpn2I	TCCGGA	1 cut(s)	313
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	372, 447
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	3 cut(s)	26, 67, 316
Lsp1109I	GCAGC	3 cut(s)	332, 423, 648
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	368, 383, 666
MaeII	ACGT	2 cut(s)	263, 285
MalI	GATC	2 cut(s)	374, 449
MboI	GATC	2 cut(s)	372, 447
MboII	GAAGA	2 cut(s)	535, 686
MhlI	GDGCHC	3 cut(s)	72, 231, 327
MlsI	TGGCCA	1 cut(s)	641
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	3 cut(s)	45, 201, 270
Mox20I	TGGCCA	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	313
MroNI	GCCGGC	1 cut(s)	290
MroXI	GAANNNNTTC	2 cut(s)	458, 527
MscI	TGGCCA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	291, 314
MspR9I	CCNGG	2 cut(s)	128, 560
MvaI	CCWGG	2 cut(s)	128, 560
MvnI	CGCG	3 cut(s)	144, 484, 486
MwoI	GCNNNNNNNGC	6 cut(s)	345, 412, 421, 442, 598, 658
NaeI	GCCGGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	372, 447
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	13, 64, 172
NlaIV	GGNNCC	4 cut(s)	22, 69, 312, 564
NmeAIII	GCCGAG	1 cut(s)	610
NspI	RCATGY	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	458, 527
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	6 cut(s)	347, 405, 408, 438, 488, 663
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	126, 558
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	126, 558
PspN4I	GGNNCC	4 cut(s)	22, 69, 312, 564
PspPI	GGNCC	5 cut(s)	391, 401, 556, 562, 576
PspPPI	RGGWCCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	302, 493
RsaNI	GTAC	2 cut(s)	301, 492
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	518
SatI	GCNGC	6 cut(s)	346, 404, 407, 437, 487, 662
Sau3AI	GATC	2 cut(s)	372, 447
Sau96I	GGNCC	5 cut(s)	391, 401, 556, 562, 576
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	128, 560
SduI	GDGCHC	3 cut(s)	72, 231, 327
SetI	ASST	9 cut(s)	138, 195, 240, 266, 288, 390, 530, 594, 683
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	2 cut(s)	556, 562
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	368, 383, 666
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	126, 558
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	2 cut(s)	266, 288
TaqI	TCGA	2 cut(s)	428, 521
TaqII	GACCGA	1 cut(s)	208
TauI	GCSGC	3 cut(s)	406, 409, 489
TfiI	GAWTC	1 cut(s)	646
TseI	GCWGC	3 cut(s)	345, 436, 661
TspGWI	ACGGA	3 cut(s)	4, 22, 509
VneI	GTGCAC	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	556, 562
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	2 cut(s)	458, 527
XspI	CTAG	3 cut(s)	368, 383, 666
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.