Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005157

Physical Location & Seq

Genomic Coordinates Reverse (-)

8379956 .. 8381112

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1063400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGACTTCTTCGACTTCTTCCTCCCACCAAGATAACCCACAAAAGGTCCAATTCCCGTTGGACTCCGCCGCGTACAAAGACCTCCAAGAAATCGGCTCTGGCGACAAGGCCGTCGTCGTCTACAAGGCCGTCTGCGTCCCCATGAACTCTGCAATCGTCGCAATCAAGTCCGTTGACCTCAATCAATCCGCGGCCGATTTCGAAAGCAAGCTACGCGATACCAAGACTCTGTCTCTTTTCCCACCACAACATTCTCAGCGACCATTGCTCCTTCACCACCGCCGACCGCCGTCTCTGGGTGGAACAAGTCCAGGCAACATCAAACCCGGAAACATCTTGGTTGACTCTGATGGGTCTGTTAAGCTGCGCCAATTTCGGGGTCTCTGCTTTCTTTCTTTCTACGGCGCCGATCATTCAACTGGGACAAACGACACTTCTGCAACGCCGTATTGGGTGGCGCCCAACGGAGGTGGATGCAAGGCGGATATCTGGGCATTTGGGATCACGGCTCTGGAATTGGCTCTCGGCGGCCCTCCCGTGTCTGACCTGCCGCCGTTTTTAGAGTCTCAGATTCTGAAGGTCAAGAACAGGTTCCCGTTTTCCGATTACAAAAACATCATCAAAGATTTCAAGAACAAGAAGTACTCAGCGGATTTCAAGGACTTGGTGCGTTCTTGCCTTGATCGGGACCCGGAAAAGAGGCCTGCGGCGGAGACGCTGCTGAAGCACTCGTTTTTCCACAACTACAGTGGCAAGGATTTTCTGGTGGGGACTGTGCTTCCGCATTTGGAGAGCGTTGAGGAGAGGTTCAAGAAAAGAAACAGGGGTTTGGCTCCGAGTCTTCTGGCGGAGGCAAATCCCCGCTGTCAATATTTGCAACGAGGTTGGCAAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

301

Amino Acids

33.12

Weight (kDa)

9.17

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	108 - 247	1.9e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	111 - 243	4.6e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14480
fragaria_vesca	FvH4_4g03000
malus_domestica	MD01G1106400.v1.1 MD01G1106800.v1.1 MD02G1095900.v1.1 MD04G1063400.v1.1 MD04G1063500.v1.1 MD07G1020600.v1.1 MD07G1020800.v1.1 MD16G1212100.v1.1
prunus_persica	Prupe.1G031800_v2.0.a1 Prupe.1G033800_v2.0.a1 Prupe.1G034000_v2.0.a1 Prupe.4G193100_v2.0.a1
pyrus_communis	pycom01g13320 pycom01g13330 pycom01g13350 pycom07g01600 pycom16g17810
rosa_chinensis	RchiOBHm_Chr4g0391181
rosa_laevigata	RLG00000009879
rosa_multiflora	Rmu_co8201760.1_g000001 Rmu_sc0000040.1_g000009
rosa_roxburghii	Rroxscaffold_5G00336980
rosa_rugosa	Rorug03G0334900
rosa_samantha	Rh4AG035700 Rh4BG030700 Rh4CG039000 Rh4DG033200
rosa_wichuraiana	Rw4G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	2 cut(s)	407, 460
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	3 cut(s)	74, 194, 219
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	599, 746
AcyI	GRCGYC	2 cut(s)	408, 461
AfaI	GTAC	2 cut(s)	77, 647
AfiI	CCNNNNNNNGG	5 cut(s)	46, 299, 379, 470, 688
AgsI	TTSAA	4 cut(s)	420, 634, 661, 814
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	214, 367
AluI	AGCT	2 cut(s)	214, 367
Alw26I	GTCTC	5 cut(s)	240, 300, 389, 573, 710
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	577
AoxI	GGCC	5 cut(s)	111, 129, 195, 532, 704
ApeKI	GCWGC	2 cut(s)	367, 721
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	3 cut(s)	372, 410, 463
AspS9I	GGNCC	3 cut(s)	49, 533, 691
AsuC2I	CCSGG	2 cut(s)	330, 695
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	49, 691
BanI	GGYRCC	2 cut(s)	407, 460
BbsI	GAAGAC	1 cut(s)	836
BbvI	GCAGC	2 cut(s)	354, 708
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	7 cut(s)	98, 116, 277, 421, 433, 525, 541
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	330, 695
BcoDI	GTCTC	5 cut(s)	240, 300, 389, 573, 710
BfmI	CTRYAG	1 cut(s)	748
BfoI	RGCGCY	2 cut(s)	411, 464
BfuAI	ACCTGC	1 cut(s)	558
BisI	GCNGC	7 cut(s)	72, 195, 368, 532, 554, 711, 722
BlsI	GCNGC	7 cut(s)	73, 196, 369, 533, 555, 712, 723
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	315, 330, 695
Bme18I	GGWCC	2 cut(s)	49, 691
BmgT120I	GGNCC	3 cut(s)	49, 533, 691
BmiI	GGNNCC	6 cut(s)	409, 462, 596, 692, 693, 837
BmrFI	CCNGG	3 cut(s)	315, 330, 695
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	836
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	330, 695
BsaHI	GRCGYC	2 cut(s)	408, 461
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 299, 379, 470, 688
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	5 cut(s)	46, 299, 379, 470, 688
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	272, 584, 663
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	818
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	354, 708
Bsh1236I	CGCG	3 cut(s)	74, 194, 219
Bsh1285I	CGRYCG	2 cut(s)	198, 290
BshFI	GGCC	5 cut(s)	113, 131, 197, 534, 706
BshNI	GGYRCC	2 cut(s)	407, 460
BsiEI	CGRYCG	2 cut(s)	198, 290
BsiSI	CCGG	2 cut(s)	330, 695
BslFI	GGGAC	4 cut(s)	125, 439, 704, 787
BslI	CCNNNNNNNGG	5 cut(s)	46, 299, 379, 470, 688
BsmAI	GTCTC	5 cut(s)	240, 300, 389, 573, 710
BsmBI	CGTCTC	2 cut(s)	300, 710
BsmFI	GGGAC	4 cut(s)	125, 439, 704, 787
BsnI	GGCC	5 cut(s)	113, 131, 197, 534, 706
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	412, 504, 685
BspANI	GGCC	5 cut(s)	113, 131, 197, 534, 706
BspCNI	CTCAG	3 cut(s)	271, 583, 662
BspFNI	CGCG	3 cut(s)	74, 194, 219
BspLI	GGNNCC	6 cut(s)	409, 462, 596, 692, 693, 837
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	512
BspT104I	TTCGAA	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	407, 460
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	412, 504, 685
BssNI	GRCGYC	2 cut(s)	408, 461
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	752, 778
BstACI	GRCGYC	2 cut(s)	408, 461
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	212, 708
BstDEI	CTNAG	3 cut(s)	258, 570, 649
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	482
BstFNI	CGCG	3 cut(s)	74, 194, 219
BstH2I	RGCGCY	2 cut(s)	411, 464
BstHHI	GCGC	3 cut(s)	372, 410, 463
BstKTI	GATC	3 cut(s)	415, 507, 688
BstMAI	GTCTC	5 cut(s)	240, 300, 389, 573, 710
BstMBI	GATC	3 cut(s)	412, 504, 685
BstMCI	CGRYCG	2 cut(s)	198, 290
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 216, 268, 727
BstNI	CCWGG	1 cut(s)	315
BstPAI	GACNNNNGTC	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	313, 328, 693
BstSFI	CTRYAG	1 cut(s)	748
BstUI	CGCG	3 cut(s)	74, 194, 219
BstV1I	GCAGC	2 cut(s)	354, 708
BstV2I	GAAGAC	1 cut(s)	836
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	5 cut(s)	113, 131, 197, 534, 706
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	757
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	212, 708
CaiI	CAGNNNCTG	1 cut(s)	577
CfoI	GCGC	3 cut(s)	372, 410, 463
Cfr13I	GGNCC	3 cut(s)	49, 533, 691
Cfr42I	CCGCGG	1 cut(s)	195
CseI	GACGC	2 cut(s)	127, 727
Csp6I	GTAC	2 cut(s)	76, 646
CspCI	CAANNNNNGTGG	4 cut(s)	454, 489, 733, 768
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	2 cut(s)	76, 646
DdeI	CTNAG	3 cut(s)	258, 570, 649
DinI	GGCGCC	2 cut(s)	409, 462
DpnI	GATC	3 cut(s)	414, 506, 687
DpnII	GATC	3 cut(s)	412, 504, 685
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
EciI	GGCGGA	4 cut(s)	58, 500, 728, 866
EclXI	CGGCCG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	706
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	49, 691
Eco52I	CGGCCG	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	599, 746
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	490
EgeI	GGCGCC	2 cut(s)	409, 462
EheI	GGCGCC	2 cut(s)	409, 462
Esp3I	CGTCTC	2 cut(s)	300, 710
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FaqI	GGGAC	4 cut(s)	125, 439, 704, 787
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	872
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	7 cut(s)	72, 195, 368, 532, 554, 711, 722
FokI	GGATG	1 cut(s)	489
Fsp4HI	GCNGC	7 cut(s)	72, 195, 368, 532, 554, 711, 722
GlaI	GCGC	3 cut(s)	371, 409, 462
GluI	GCNGC	7 cut(s)	72, 195, 368, 532, 554, 711, 722
HaeII	RGCGCY	2 cut(s)	411, 464
HaeIII	GGCC	5 cut(s)	113, 131, 197, 534, 706
HapII	CCGG	2 cut(s)	330, 695
HgaI	GACGC	2 cut(s)	127, 727
HhaI	GCGC	3 cut(s)	372, 410, 463
Hin1I	GRCGYC	2 cut(s)	408, 461
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	3 cut(s)	370, 408, 461
HinP1I	GCGC	3 cut(s)	370, 408, 461
HincII	GTYRAC	2 cut(s)	178, 346
HindII	GTYRAC	2 cut(s)	178, 346
HinfI	GANTC	6 cut(s)	65, 229, 347, 566, 574, 841
HpaII	CCGG	2 cut(s)	330, 695
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	124, 178, 346
Hpy188I	TCNGA	6 cut(s)	352, 547, 573, 579, 607, 840
Hpy188III	TCNNGA	5 cut(s)	515, 586, 634, 689, 814
Hpy8I	GTNNAC	3 cut(s)	124, 178, 346
Hpy99I	CGWCG	3 cut(s)	119, 122, 164
HpyAV	CCTTC	2 cut(s)	284, 574
HpyCH4III	ACNGT	2 cut(s)	752, 778
HpyCH4V	TGCA	4 cut(s)	155, 443, 480, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 216, 268, 727
HpyF3I	CTNAG	3 cut(s)	258, 570, 649
Hsp92I	GRCGYC	2 cut(s)	408, 461
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	3 cut(s)	370, 408, 461
KasI	GGCGCC	2 cut(s)	407, 460
KflI	GGGWCCC	1 cut(s)	691
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	412, 504, 685
LmnI	GCTCC	2 cut(s)	276, 841
Lsp1109I	GCAGC	2 cut(s)	354, 708
LweI	GCATC	1 cut(s)	467
MalI	GATC	3 cut(s)	414, 506, 687
MboI	GATC	3 cut(s)	412, 504, 685
MboII	GAAGA	3 cut(s)	3, 12, 836
MluCI	AATT	3 cut(s)	53, 374, 518
Mly113I	GGCGCC	2 cut(s)	408, 461
MlyI	GAGTC	5 cut(s)	59, 223, 341, 575, 850
MmeI	TCCRAC	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	3 cut(s)	194, 653, 867
MspI	CCGG	2 cut(s)	330, 695
MspR9I	CCNGG	3 cut(s)	315, 330, 695
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	3 cut(s)	74, 194, 219
MwoI	GCNNNNNNNGC	4 cut(s)	161, 216, 268, 727
NarI	GGCGCC	2 cut(s)	408, 461
NciI	CCSGG	2 cut(s)	330, 695
NdeII	GATC	3 cut(s)	412, 504, 685
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	6 cut(s)	409, 462, 596, 692, 693, 837
NmeAIII	GCCGAG	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	574
PflFI	GACNNNGTC	1 cut(s)	232
PkrI	GCNGC	7 cut(s)	73, 196, 369, 533, 555, 712, 723
PleI	GAGTC	5 cut(s)	59, 223, 341, 574, 849
PluTI	GGCGCC	2 cut(s)	411, 464
PpsI	GAGTC	5 cut(s)	59, 223, 341, 574, 849
PpuMI	RGGWCCY	1 cut(s)	691
PshAI	GACNNNNGTC	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	6 cut(s)	409, 462, 596, 692, 693, 837
PspPI	GGNCC	3 cut(s)	49, 533, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsrI	GAACNNNNNNTAC	2 cut(s)	629, 661
PstNI	CAGNNNCTG	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	77, 647
RsaNI	GTAC	2 cut(s)	76, 646
SacII	CCGCGG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	7 cut(s)	72, 195, 368, 532, 554, 711, 722
Sau3AI	GATC	3 cut(s)	412, 504, 685
Sau96I	GGNCC	3 cut(s)	49, 533, 691
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	5 cut(s)	59, 223, 341, 575, 850
ScrFI	CCNGG	3 cut(s)	315, 330, 695
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	748
SfoI	GGCGCC	2 cut(s)	409, 462
Sfr303I	CCGCGG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	49, 691
Sse9I	AATT	3 cut(s)	53, 374, 518
SseBI	AGGCCT	1 cut(s)	706
SspDI	GGCGCC	2 cut(s)	407, 460
SspI	AATATT	1 cut(s)	875
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	3 cut(s)	313, 328, 693
TaaI	ACNGT	2 cut(s)	752, 778
TaqI	TCGA	2 cut(s)	14, 204
TasI	AATT	3 cut(s)	53, 374, 518
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	5 cut(s)	74, 197, 534, 556, 713
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	757
TseI	GCWGC	2 cut(s)	367, 721
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	163, 483
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	49, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.