Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Reverse (-)

2449435 .. 2450415

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1030100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTGGATGCTTGGAGGATCCTGTAAGGTTTTCGATGGGATGAAAGAGCGAACGGTTGTGTCATGGTCAGCTATGATCGCAGGGTTTGCCATGCACGGGCAAGCTGAGGAAGCTCTAAGACTTTTCTCTAAAATGATTCAGAAAGGCATGGATCCGAATGATGTAACCTTTGTCGGACTGTTGCATGCTTCTAGCCACATTGGGTTTGTGGATCAGGGTCGTGAATTCTTCACCAGCATGACTAACGATTATGGTATAGTTCCTAGAATTGAGCATTACGGTTGCATGGTTGATCTTTTAAGTAGGCAGGGCTCCTTCAAGAGGCTTACGATCGAGTTTATCACAAACATGCCTATCAAGCCCAATACTGTCGTATGGGGAGCTCTCCTTGGCGGATGCAAAGTTCACAAAAACATTGAACTGGCTGAAGAAGCAACTAAGCACCTTTCGGAATTGGATCCACTTAATGATGGATACTATGTGGTTCTGTCAAACCTTTATGCAGAAGCACAACGGTGGGAAGACACAACGAGGGTGAGAAAGATAATGAGGGATCGAGGGGTGAAGAAGACGCCCGCGTGGAGTTCAATTACAGTGGATGGAGTGGTTCATGAGTTTGTAGCCGAGGATGAAACCCGTCCTCAAACTCAAGAGACCGTCCAAATGTGGGAGAAACTAGTTGAGAAAATGAAGCTGAAGGGTTATGTGCCTAACGCCTCAGTTGTTCTGCTAGACATGGAAGAGGATCAGAAGGAAAAGTTTCTCTATCGTCATATCGAGAAATTAGCGCTGGTTTTCAGGTTGATCAACACAGAACCTGGAACACCAATTCGAATTATGAAGAATCTTCGTGTTTGTGAGGACTGTCATGCTGCTTTCAAACTTATATCAGCAACTTTTAGAAGAGAGATAGTTGTGCGTGACCGTAACCGGTTCCATTGTTTCAAAGATGGTTTTTGTTCCTGCAGGGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

327

Amino Acids

37.56

Weight (kDa)

7.62

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	18 - 63	9.4e-12	PPR repeat family
PPR	PF01535	20 - 49	2.6e-08	PPR repeat
E_motif	PF20431	136 - 197	2e-18	E motif
DYW_deaminase	PF14432	234 - 326	2.5e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	578
AciI	CCGC	2 cut(s)	393, 576
AclWI	GGATC	9 cut(s)	12, 25, 146, 159, 219, 452, 465, 561, 753
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	447, 716
AcyI	GRCGYC	1 cut(s)	572
AfeI	AGCGCT	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	96, 321, 667
AgeI	ACCGGT	1 cut(s)	930
AgsI	TTSAA	5 cut(s)	319, 419, 588, 880, 946
AhlI	ACTAGT	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	817
AleI	CACNNNNGTG	1 cut(s)	514
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	5 cut(s)	71, 104, 113, 383, 694
AluI	AGCT	5 cut(s)	71, 104, 113, 383, 694
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	9 cut(s)	12, 25, 146, 159, 219, 452, 465, 561, 753
AlwNI	CAGNNNCTG	1 cut(s)	818
Aor51HI	AGCGCT	1 cut(s)	789
ApeKI	GCWGC	1 cut(s)	872
ApoI	RAATTY	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	930
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	790
AsuHPI	GGTGA	3 cut(s)	223, 547, 574
AsuII	TTCGAA	1 cut(s)	832
BamHI	GGATCC	3 cut(s)	17, 151, 457
BanII	GRGCYC	2 cut(s)	314, 385
BbsI	GAAGAC	2 cut(s)	528, 575
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	4 cut(s)	29, 464, 593, 944
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	1 cut(s)	647
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	4 cut(s)	192, 264, 677, 731
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	873
BlsI	GCNGC	1 cut(s)	874
Bme1390I	CCNGG	1 cut(s)	819
BmiI	GGNNCC	5 cut(s)	19, 153, 313, 459, 935
BmrFI	CCNGG	1 cut(s)	819
BmsI	GCATC	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	528, 575
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	832
BpuEI	CTTGAG	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	388, 624
BsaWI	WCCGGW	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 321, 667
Bse118I	RCCGGY	1 cut(s)	930
Bse1I	ACTGG	2 cut(s)	426, 980
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	2 cut(s)	388, 624
BseGI	GGATG	5 cut(s)	12, 45, 401, 604, 634
BseLI	CCNNNNNNNGG	3 cut(s)	96, 321, 667
BseMII	CTCAG	2 cut(s)	96, 732
BseNI	ACTGG	2 cut(s)	426, 980
BseXI	GCAGC	1 cut(s)	859
Bsh1236I	CGCG	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	930
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	931
BslI	CCNNNNNNNGG	3 cut(s)	96, 321, 667
BsmAI	GTCTC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	832
Bsp1286I	GDGCHC	2 cut(s)	314, 385
BspACI	CCGC	2 cut(s)	393, 576
BspCNI	CTCAG	2 cut(s)	97, 731
BspFNI	CGCG	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	19, 153, 313, 459, 935
BspMAI	CTGCAG	1 cut(s)	968
BspPI	GGATC	9 cut(s)	12, 25, 146, 159, 219, 452, 465, 561, 753
BspT104I	TTCGAA	1 cut(s)	832
BspTNI	GGTCTC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	426, 980
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	2 cut(s)	388, 624
BssNI	GRCGYC	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	9 cut(s)	55, 180, 281, 370, 516, 595, 658, 866, 926
Bst6I	CTCTTC	2 cut(s)	735, 898
BstACI	GRCGYC	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	832
BstC8I	GCNNGC	3 cut(s)	102, 186, 576
BstDEI	CTNAG	4 cut(s)	105, 116, 438, 718
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	5 cut(s)	12, 45, 401, 604, 634
BstFNI	CGCG	1 cut(s)	578
BstH2I	RGCGCY	1 cut(s)	791
BstHHI	GCGC	1 cut(s)	790
BstMAI	GTCTC	1 cut(s)	647
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 86, 110, 358, 431
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	2 cut(s)	188, 352
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	1 cut(s)	964
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	1 cut(s)	859
BstV2I	GAAGAC	2 cut(s)	528, 575
BstX2I	RGATCY	3 cut(s)	17, 151, 457
BstYI	RGATCY	3 cut(s)	17, 151, 457
BsuI	GTATCC	1 cut(s)	467
BtsCI	GGATG	5 cut(s)	12, 45, 401, 604, 634
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	3 cut(s)	102, 186, 576
CaiI	CAGNNNCTG	1 cut(s)	818
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	930
CseI	GACGC	1 cut(s)	580
CspAI	ACCGGT	1 cut(s)	930
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
DdeI	CTNAG	4 cut(s)	105, 116, 438, 718
Eam1104I	CTCTTC	2 cut(s)	735, 898
EarI	CTCTTC	2 cut(s)	735, 898
EciI	GGCGGA	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	314, 385
Eco31I	GGTCTC	1 cut(s)	647
Eco47III	AGCGCT	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	447, 716
EcoICRI	GAGCTC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	314, 385
ErhI	CCWWGG	1 cut(s)	388
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	804
Fnu4HI	GCNGC	1 cut(s)	873
FokI	GGATG	5 cut(s)	19, 52, 408, 611, 641
FriOI	GRGCYC	2 cut(s)	314, 385
Fsp4HI	GCNGC	1 cut(s)	873
FspBI	CTAG	4 cut(s)	192, 264, 677, 731
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	1 cut(s)	873
HaeII	RGCGCY	1 cut(s)	791
HapII	CCGG	1 cut(s)	931
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	790
Hin1I	GRCGYC	1 cut(s)	572
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	2 cut(s)	136, 844
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	3 cut(s)	223, 547, 574
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	5 cut(s)	141, 156, 176, 451, 750
Hpy188III	TCNNGA	5 cut(s)	221, 319, 611, 650, 778
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	325, 691, 745
HpyCH4III	ACNGT	9 cut(s)	55, 180, 281, 370, 516, 595, 658, 866, 926
HpyCH4V	TGCA	6 cut(s)	94, 184, 285, 399, 503, 966
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 86, 110, 358, 431
HpyF3I	CTNAG	4 cut(s)	105, 116, 438, 718
Hsp92I	GRCGYC	1 cut(s)	572
HspAI	GCGC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	317, 380
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	4 cut(s)	192, 264, 677, 731
MaeIII	GTNAC	3 cut(s)	163, 920, 926
MboII	GAAGA	9 cut(s)	220, 440, 533, 577, 580, 752, 839, 853, 915
MflI	RGATCY	3 cut(s)	17, 151, 457
MhlI	GDGCHC	2 cut(s)	314, 385
MluCI	AATT	7 cut(s)	224, 267, 452, 588, 782, 828, 834
MmeI	TCCRAC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	2 cut(s)	299, 465
MslI	CAYNNNNRTG	3 cut(s)	236, 347, 514
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	819
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	5 cut(s)	77, 86, 110, 358, 431
NlaIV	GGNNCC	5 cut(s)	19, 153, 313, 459, 935
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	2 cut(s)	188, 352
NspV	TTCGAA	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	136, 844
PinAI	ACCGGT	1 cut(s)	930
PkrI	GCNGC	1 cut(s)	874
Ple19I	CGATCG	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	5 cut(s)	19, 153, 313, 459, 935
PstI	CTGCAG	1 cut(s)	968
PstNI	CAGNNNCTG	1 cut(s)	818
PsuI	RGATCY	3 cut(s)	17, 151, 457
PvuI	CGATCG	1 cut(s)	333
RseI	CAYNNNNRTG	3 cut(s)	236, 347, 514
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	299, 465
SatI	GCNGC	1 cut(s)	873
SbfI	CCTGCAGG	1 cut(s)	968
ScrFI	CCNGG	1 cut(s)	819
SdaI	CCTGCAGG	1 cut(s)	968
SduI	GDGCHC	2 cut(s)	314, 385
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	1 cut(s)	964
SfuI	TTCGAA	1 cut(s)	832
SmiMI	CAYNNNNRTG	3 cut(s)	236, 347, 514
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
SpeI	ACTAGT	1 cut(s)	676
SphI	GCATGC	1 cut(s)	188
Sse8387I	CCTGCAGG	1 cut(s)	968
Sse9I	AATT	7 cut(s)	224, 267, 452, 588, 782, 828, 834
SsiI	CCGC	2 cut(s)	393, 576
SspMI	CTAG	4 cut(s)	192, 264, 677, 731
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	817
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	9 cut(s)	55, 180, 281, 370, 516, 595, 658, 866, 926
TaqI	TCGA	5 cut(s)	33, 333, 556, 777, 832
TasI	AATT	7 cut(s)	224, 267, 452, 588, 782, 828, 834
TfiI	GAWTC	2 cut(s)	136, 844
Tru1I	TTAA	2 cut(s)	299, 465
Tru9I	TTAA	2 cut(s)	299, 465
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	1 cut(s)	872
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	56, 599, 645, 704, 854
TspRI	CASTG	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	188, 352
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	4 cut(s)	192, 264, 677, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.