Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Forward (+)

26108452 .. 26110722

Gene Structure 2271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1214200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGATGTTCTTTCTTGCTTCCAGAACTCACTGGATCTTCTCATCTCTAAGCTTGTCAGTCTATGACTCTATGAACTTCATGAAAAGGATCGCTATGGCATCTGCAACTCCAACCCACTTGCCAACATATACCCAGCTTCAGTCTTTCAGAAACCCAGCACCAATTGCTCTATTTGAAAACTGCAATTCCATGTACTACATCAAGCAAATACATGCCCAAGCAGTGAAAACAGGCCTCACATCGCACCCGATCGCGCGTAACAGAATCATCGTCTTTTGTTGTACTGATGAATTTGGTGATGTGAACTATGCCCGTCAAGTGTTCGACGCAATTTCTGAACCAGGTGTGTTTCTTTGGAACACCATGATCAGAGGCTATAGTCGGATACGATGCCCTCAAGACGGGGTTTCTTTGTATTTAGCAATGCAGAGGATGAGTATCAAGCCCGACTGTTATACGTTTCCGTTCTTGTTGAAGGGATTCACGCGTGAAATTGCGCTGGAATGTGGCAAAGAGTTGCACCCTCATGTGTTGAAGTATGGACTTGATACTAATGTTTTTGTTCAAAATGCTTTGGTGCATATGTATTCTGTTTGTGGCCTAATTGATATGGCACGTGGGGTTTTTGATATGATTCACATGAAGGATGTTGCAACTTGGAATGTAATGATTTCTGGGTACAATCGAATCAAGAAGTTTGATGAATCCTTGAAGCTTTTTAGTGACATGGAGAAAACAGGAGCGTTGCCCACTTCAGTTACACTTGTCTCGGTGATATCAGCGTGCTCCAAATTGAAGAATTTAGATGCCGGGAAGCAGGTTCATAAATACGTCAAGGATTGCCTGATCAAACCTGATTTAGTGTTGGGAAATGCTTTGGTTGACATGTATGTAGCTTGTGGGGAAATGCACGTTGCACTTGAGATTTTCGAAAAGATGAAAACAAAGGATGTAATTTCTTGGACTACCATTGTTAAGGGGTTTGCCAGTTCTGGACAAGTTGATCTAGCTCGGAGCTACTTCGATGAGATGCCTGAAAGAGACTACATTTCATGGACTGCAATAATGGATGGGTACCTCTGGGTGAACCGGTTCAAAGAGGCACTGGAACTTTTCCGCCAGATGCAAACTTCGAATGTAAAGCCAGATGAGTACACTATGGTAAGCATTCTAACAGCCTGTGCACATCTAGGAGCACTTGAACTCGGAGAATGGATAAAAACTTACATTGACAAGAACAAGATCAAGAATGATGTATTCGTTCGAAATGCTTTAATAGACATGTATTTCAAGTGTGGAAATGTTGAGAAAGCCTTGAGGGTCTTTAGTGCAATGCTTCAAAGGGACAAATTTACATGGACGGCTGTGATTGTTGGCCTTGCTGTTAACGGACATGGTAAGGAAGCTCTTGACGTGTTCTCTCGAATGCTAGAATCTTCGATAACTCCCGACAAGATAACTTTCATCGGTGTTCTTTCTGCGTGTACTCACTCTGGAATGGTGGCTGAAGGAAGGAACTTTTTCGATAGTATGATCACCCAACATGGAATCCAGCCTGAAGTTTCACATTACGGGTGCATGGTGGATCTTCTTGGTCGATCAGGGAATCTAAACGAAGCTTTTGAGGTTATACAGAACATGCCAATGAAACCAAATGCAGTTGTATGGGGAGCTCTGCTTGGCGCTTGTAGAATGCACAGAGATGCAGAACTGGCTGAAATTGCAGCTAAACAGACGCTCGAGCTGGAGCCCGACAACAGTTCCGTTTATGTTCTCTTGTGCAATATATATGCAGCTTGCAGTAAATGGGACAATTTGCGCGACGTAAGGCAACTGATGATGGACAGGGGAATCAAGAAGACGCCTGGTTGCAGCTCGATAGAGGTGAATGGTAATGTTCATGAGTTTGTTGCCGGGGACCGGTCACACCCTCAATCCGAAAAAATCTATTCCAAGTTGGATAAGACGATTGAAGACTTGAAAGTTGTCGGGTATTCCCCGGATACATCGGAGGTTTTCCTTGATGTGCGGGAGGAGGATAAAGAGAGTGCAGTTTGCAGGCATAGTGAGAAGTTAGCAATGGCATTTGGGCTGCTTAGTTTGGGAGATGGGGCGACAATTAGAATCATGAAGAACCTTAGAATCTGTGTGGATTGTCACAGCATGGCAAAGTTGGTCTCCAGAGTTTATGATAGAGAAGTGATTGTTAGGGATGGAACTCGGTTCCACCATTTTAGACACGGTTCGTGTTCGTGTAAAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

757

Amino Acids

85.51

Weight (kDa)

7.27

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	2.2e-09	PPR repeat family
PPR_2	PF13041	215 - 264	7e-11	PPR repeat family
PPR	PF01535	219 - 245	5.1e-06	PPR repeat
PPR_2	PF13041	348 - 396	2.5e-12	PPR repeat family
PPR_2	PF13041	449 - 495	6.1e-08	PPR repeat family
E_motif	PF20431	566 - 628	2.4e-19	E motif
Eplus_motif	PF20430	633 - 655	3e-08	E+ motif
DYW_deaminase	PF14432	664 - 756	1.2e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	808
Acc65I	GGTACC	1 cut(s)	1074
AccB1I	GGYRCC	1 cut(s)	1074
AccII	CGCG	4 cut(s)	254, 256, 487, 1821
AciI	CCGC	2 cut(s)	1117, 2029
AclWI	GGATC	3 cut(s)	41, 95, 1593
AcsI	RAATTY	3 cut(s)	290, 799, 1349
AcuI	CTGAAG	4 cut(s)	122, 738, 1527, 1578
AcvI	CACGTG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	1862
AfaI	GTAC	6 cut(s)	194, 283, 680, 1076, 1154, 1486
AfiI	CCNNNNNNNGG	2 cut(s)	401, 1920
AflIII	ACRYGT	4 cut(s)	485, 885, 1281, 1413
AgeI	ACCGGT	2 cut(s)	1089, 1920
AjiI	CACGTC	1 cut(s)	1414
AjnI	CCWGG	2 cut(s)	340, 1864
Alw21I	GWGCWC	4 cut(s)	788, 1186, 1198, 1675
Alw26I	GTCTC	3 cut(s)	772, 1035, 2182
Alw44I	GTGCAC	1 cut(s)	1182
AlwI	GGATC	3 cut(s)	41, 95, 1593
Ama87I	CYCGRG	1 cut(s)	1739
AoxI	GGCC	3 cut(s)	232, 598, 1375
ApaLI	GTGCAC	1 cut(s)	1182
ApeKI	GCWGC	4 cut(s)	1724, 1793, 1872, 2092
ApoI	RAATTY	3 cut(s)	290, 799, 1349
AsiGI	ACCGGT	2 cut(s)	1089, 1920
Asp700I	GAANNNNTTC	3 cut(s)	479, 1091, 1520
Asp718I	GGTACC	1 cut(s)	1074
AspLEI	GCGC	4 cut(s)	256, 499, 1685, 1821
AspS9I	GGNCC	1 cut(s)	1918
AsuC2I	CCSGG	3 cut(s)	811, 1915, 2000
AsuHPI	GGTGA	5 cut(s)	308, 784, 1096, 1528, 1897
AsuII	TTCGAA	3 cut(s)	930, 1133, 1264
AvaI	CYCGRG	1 cut(s)	1739
AvaII	GGWCC	1 cut(s)	1918
BaeGI	GKGCMC	1 cut(s)	1186
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	1074
BanII	GRGCYC	2 cut(s)	1675, 1752
BbrPI	CACGTG	1 cut(s)	617
BbsI	GAAGAC	2 cut(s)	1865, 1980
Bbv12I	GWGCWC	4 cut(s)	788, 1186, 1198, 1675
BbvI	GCAGC	4 cut(s)	1736, 1805, 1884, 2079
BccI	CCATC	4 cut(s)	1064, 1834, 2102, 2207
BceAI	ACGGC	1 cut(s)	1377
BciT130I	CCWGG	2 cut(s)	342, 1866
BciVI	GTATCC	2 cut(s)	378, 1996
BclI	TGATCA	3 cut(s)	366, 846, 1533
BcnI	CCSGG	3 cut(s)	811, 1915, 2000
BcoDI	GTCTC	3 cut(s)	772, 1035, 2182
BfaI	CTAG	3 cut(s)	1007, 1190, 1430
BfmI	CTRYAG	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	1686
BfuAI	ACCTGC	1 cut(s)	808
BfuI	GTATCC	2 cut(s)	378, 1996
BisI	GCNGC	4 cut(s)	1725, 1794, 1873, 2093
BlsI	GCNGC	4 cut(s)	1726, 1795, 1874, 2094
Bme1390I	CCNGG	5 cut(s)	342, 811, 1866, 1915, 2000
Bme18I	GGWCC	1 cut(s)	1918
BmeT110I	CYCGRG	1 cut(s)	1739
BmgBI	CACGTC	1 cut(s)	1414
BmgT120I	GGNCC	1 cut(s)	1918
BmiI	GGNNCC	4 cut(s)	1076, 1749, 1919, 2225
BmrFI	CCNGG	5 cut(s)	342, 811, 1866, 1915, 2000
BmsI	GCATC	6 cut(s)	107, 380, 796, 1020, 1113, 1693
BpiI	GAAGAC	2 cut(s)	1865, 1980
BpmI	CTGGAG	2 cut(s)	1766, 2164
Bpu14I	TTCGAA	3 cut(s)	930, 1133, 1264
BpuEI	CTTGAG	3 cut(s)	381, 941, 1336
BpuMI	CCSGG	3 cut(s)	811, 1915, 2000
BsaAI	YACGTR	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	1862
BsaI	GGTCTC	1 cut(s)	2182
BsaJI	CCNNGG	2 cut(s)	1914, 1998
BsaWI	WCCGGW	2 cut(s)	1089, 1920
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 1920
Bse118I	RCCGGY	2 cut(s)	1089, 1920
Bse1I	ACTGG	4 cut(s)	35, 987, 1110, 1716
Bse3DI	GCAATG	3 cut(s)	429, 1338, 2085
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	342, 1866
BseDI	CCNNGG	2 cut(s)	1914, 1998
BseGI	GGATG	5 cut(s)	438, 652, 955, 1075, 2218
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	401, 1920
BseMI	GCAATG	3 cut(s)	429, 1338, 2085
BseNI	ACTGG	4 cut(s)	35, 987, 1110, 1716
BseRI	GAGGAG	1 cut(s)	2048
BseSI	GKGCMC	1 cut(s)	1186
BseXI	GCAGC	4 cut(s)	1736, 1805, 1884, 2079
BseYI	CCCAGC	2 cut(s)	132, 154
BsgI	GTGCAG	1 cut(s)	2070
Bsh1236I	CGCG	4 cut(s)	254, 256, 487, 1821
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	234, 600, 1377
BshNI	GGYRCC	1 cut(s)	1074
BshTI	ACCGGT	2 cut(s)	1089, 1920
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	4 cut(s)	788, 1186, 1198, 1675
BsiHKCI	CYCGRG	1 cut(s)	1739
BsiSI	CCGG	5 cut(s)	810, 1090, 1914, 1921, 2000
BslFI	GGGAC	3 cut(s)	1358, 1823, 1931
BslI	CCNNNNNNNGG	2 cut(s)	401, 1920
BsmAI	GTCTC	3 cut(s)	772, 1035, 2182
BsmFI	GGGAC	3 cut(s)	1358, 1823, 1931
BsmI	GAATGC	3 cut(s)	1167, 1431, 1698
BsnI	GGCC	3 cut(s)	234, 600, 1377
Bso31I	GGTCTC	1 cut(s)	2182
BsoBI	CYCGRG	1 cut(s)	1739
Bsp119I	TTCGAA	3 cut(s)	930, 1133, 1264
Bsp1286I	GDGCHC	5 cut(s)	788, 1186, 1198, 1675, 1752
BspACI	CCGC	2 cut(s)	1117, 2029
BspANI	GGCC	3 cut(s)	234, 600, 1377
BspFNI	CGCG	4 cut(s)	254, 256, 487, 1821
BspHI	TCATGA	3 cut(s)	78, 1900, 2127
BspLI	GGNNCC	4 cut(s)	1076, 1749, 1919, 2225
BspMI	ACCTGC	1 cut(s)	808
BspPI	GGATC	3 cut(s)	41, 95, 1593
BspT104I	TTCGAA	3 cut(s)	930, 1133, 1264
BspT107I	GGYRCC	1 cut(s)	1074
BspTNI	GGTCTC	1 cut(s)	2182
BsrDI	GCAATG	3 cut(s)	429, 1338, 2085
BsrFI	RCCGGY	2 cut(s)	1089, 1920
BsrI	ACTGG	4 cut(s)	35, 987, 1110, 1716
BssAI	RCCGGY	2 cut(s)	1089, 1920
BssECI	CCNNGG	2 cut(s)	1914, 1998
BssNI	GRCGYC	1 cut(s)	1862
Bst2UI	CCWGG	2 cut(s)	342, 1866
Bst4CI	ACNGT	3 cut(s)	452, 1760, 2243
BstACI	GRCGYC	1 cut(s)	1862
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	617
BstBI	TTCGAA	3 cut(s)	930, 1133, 1264
BstC8I	GCNNGC	3 cut(s)	784, 1798, 2060
BstDEI	CTNAG	3 cut(s)	47, 2096, 2138
BstF5I	GGATG	5 cut(s)	438, 652, 955, 1075, 2218
BstFNI	CGCG	4 cut(s)	254, 256, 487, 1821
BstH2I	RGCGCY	1 cut(s)	1686
BstHHI	GCGC	4 cut(s)	256, 499, 1685, 1821
BstMAI	GTCTC	3 cut(s)	772, 1035, 2182
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 1712, 1721
BstNI	CCWGG	2 cut(s)	342, 1866
BstNSI	RCATGY	4 cut(s)	215, 889, 1285, 1642
BstSCI	CCNGG	5 cut(s)	340, 809, 1864, 1913, 1998
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	1186
BstUI	CGCG	4 cut(s)	254, 256, 487, 1821
BstV1I	GCAGC	4 cut(s)	1736, 1805, 1884, 2079
BstV2I	GAAGAC	2 cut(s)	1865, 1980
BstX2I	RGATCY	2 cut(s)	33, 1585
BstYI	RGATCY	2 cut(s)	33, 1585
BsuI	GTATCC	2 cut(s)	378, 1996
BsuRI	GGCC	3 cut(s)	234, 600, 1377
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	1414
BtsCI	GGATG	5 cut(s)	438, 652, 955, 1075, 2218
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	28, 228, 1103
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	3 cut(s)	784, 1798, 2060
CciI	TCATGA	3 cut(s)	78, 1900, 2127
CfoI	GCGC	4 cut(s)	256, 499, 1685, 1821
Cfr10I	RCCGGY	2 cut(s)	1089, 1920
Cfr13I	GGNCC	1 cut(s)	1918
CseI	GACGC	3 cut(s)	335, 1744, 1870
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	6 cut(s)	193, 282, 679, 1075, 1153, 1485
CspAI	ACCGGT	2 cut(s)	1089, 1920
CviQI	GTAC	6 cut(s)	193, 282, 679, 1075, 1153, 1485
DdeI	CTNAG	3 cut(s)	47, 2096, 2138
EciI	GGCGGA	1 cut(s)	1106
Ecl136II	GAGCTC	1 cut(s)	1673
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	1675, 1752
Eco31I	GGTCTC	1 cut(s)	2182
Eco32I	GATATC	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	1918
Eco53kI	GAGCTC	1 cut(s)	1673
Eco57I	CTGAAG	4 cut(s)	122, 738, 1527, 1578
Eco72I	CACGTG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	1739
EcoICRI	GAGCTC	1 cut(s)	1673
EcoRII	CCWGG	2 cut(s)	340, 1864
EcoRV	GATATC	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	1675, 1752
FaqI	GGGAC	3 cut(s)	1358, 1823, 1931
FauI	CCCGC	1 cut(s)	2022
FauNDI	CATATG	1 cut(s)	582
FbaI	TGATCA	3 cut(s)	366, 846, 1533
Fnu4HI	GCNGC	4 cut(s)	1725, 1794, 1873, 2093
FokI	GGATG	5 cut(s)	445, 659, 962, 1082, 2225
FriOI	GRGCYC	2 cut(s)	1675, 1752
Fsp4HI	GCNGC	4 cut(s)	1725, 1794, 1873, 2093
FspBI	CTAG	3 cut(s)	1007, 1190, 1430
GlaI	GCGC	4 cut(s)	255, 498, 1684, 1820
GluI	GCNGC	4 cut(s)	1725, 1794, 1873, 2093
GsaI	CCCAGC	2 cut(s)	136, 158
GsuI	CTGGAG	2 cut(s)	1766, 2164
HaeII	RGCGCY	1 cut(s)	1686
HaeIII	GGCC	3 cut(s)	234, 600, 1377
HapII	CCGG	5 cut(s)	810, 1090, 1914, 1921, 2000
HgaI	GACGC	3 cut(s)	335, 1744, 1870
HhaI	GCGC	4 cut(s)	256, 499, 1685, 1821
Hin1I	GRCGYC	1 cut(s)	1862
Hin6I	GCGC	4 cut(s)	254, 497, 1683, 1819
HinP1I	GCGC	4 cut(s)	254, 497, 1683, 1819
HincII	GTYRAC	2 cut(s)	883, 1387
HindII	GTYRAC	2 cut(s)	883, 1387
HindIII	AAGCTT	3 cut(s)	49, 713, 1617
HpaI	GTTAAC	1 cut(s)	1387
HpaII	CCGG	5 cut(s)	810, 1090, 1914, 1921, 2000
HphI	GGTGA	5 cut(s)	308, 784, 1096, 1528, 1897
Hpy166II	GTNNAC	7 cut(s)	304, 883, 1087, 1155, 1184, 1387, 1485
Hpy188I	TCNGA	8 cut(s)	149, 337, 371, 384, 1014, 1208, 1939, 2011
Hpy8I	GTNNAC	7 cut(s)	304, 883, 1087, 1155, 1184, 1387, 1485
Hpy99I	CGWCG	2 cut(s)	329, 1826
HpyAV	CCTTC	4 cut(s)	469, 637, 1502, 1506
HpyCH4III	ACNGT	3 cut(s)	452, 1760, 2243
HpyCH4IV	ACGT	6 cut(s)	458, 616, 831, 912, 1413, 1824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 1712, 1721
HpyF3I	CTNAG	3 cut(s)	47, 2096, 2138
HpySE526I	ACGT	6 cut(s)	458, 616, 831, 912, 1413, 1824
Hsp92I	GRCGYC	1 cut(s)	1862
HspAI	GCGC	4 cut(s)	254, 497, 1683, 1819
KpnI	GGTACC	1 cut(s)	1078
Ksp22I	TGATCA	3 cut(s)	366, 846, 1533
KspAI	GTTAAC	1 cut(s)	1387
LmnI	GCTCC	6 cut(s)	740, 791, 1014, 1193, 1670, 1747
Lsp1109I	GCAGC	4 cut(s)	1736, 1805, 1884, 2079
LweI	GCATC	6 cut(s)	107, 380, 796, 1020, 1113, 1693
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	3 cut(s)	1007, 1190, 1430
MaeII	ACGT	6 cut(s)	458, 616, 831, 912, 1413, 1824
MaeIII	GTNAC	5 cut(s)	257, 722, 757, 1923, 2156
MboII	GAAGA	7 cut(s)	28, 808, 1428, 1580, 1870, 1985, 2143
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	33, 1585
MhlI	GDGCHC	5 cut(s)	788, 1186, 1198, 1675, 1752
MluI	ACGCGT	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	3 cut(s)	134, 362, 1938
MroXI	GAANNNNTTC	3 cut(s)	479, 1091, 1520
MseI	TTAA	3 cut(s)	975, 1274, 1386
MslI	CAYNNNNRTG	3 cut(s)	525, 1643, 1701
MspI	CCGG	5 cut(s)	810, 1090, 1914, 1921, 2000
MspR9I	CCNGG	5 cut(s)	342, 811, 1866, 1915, 2000
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	3 cut(s)	1167, 1431, 1698
MvaI	CCWGG	2 cut(s)	342, 1866
MvnI	CGCG	4 cut(s)	254, 256, 487, 1821
MwoI	GCNNNNNNNGC	3 cut(s)	164, 1712, 1721
NciI	CCSGG	3 cut(s)	811, 1915, 2000
NdeI	CATATG	1 cut(s)	582
NlaIV	GGNNCC	4 cut(s)	1076, 1749, 1919, 2225
NmuCI	GTSAC	3 cut(s)	722, 1923, 2156
NspI	RCATGY	4 cut(s)	215, 889, 1285, 1642
NspV	TTCGAA	3 cut(s)	930, 1133, 1264
PaeR7I	CTCGAG	1 cut(s)	1739
PagI	TCATGA	3 cut(s)	78, 1900, 2127
PceI	AGGCCT	1 cut(s)	234
PciI	ACATGT	2 cut(s)	885, 1281
PctI	GAATGC	3 cut(s)	1167, 1431, 1698
PdmI	GAANNNNTTC	3 cut(s)	479, 1091, 1520
PinAI	ACCGGT	2 cut(s)	1089, 1920
PkrI	GCNGC	4 cut(s)	1726, 1795, 1874, 2094
Ple19I	CGATCG	1 cut(s)	252
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	617
PscI	ACATGT	2 cut(s)	885, 1281
Psp124BI	GAGCTC	1 cut(s)	1675
Psp6I	CCWGG	2 cut(s)	340, 1864
PspCI	CACGTG	1 cut(s)	617
PspFI	CCCAGC	2 cut(s)	132, 154
PspGI	CCWGG	2 cut(s)	340, 1864
PspN4I	GGNNCC	4 cut(s)	1076, 1749, 1919, 2225
PspPI	GGNCC	1 cut(s)	1918
PspXI	VCTCGAGB	1 cut(s)	1739
PsuI	RGATCY	2 cut(s)	33, 1585
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	6 cut(s)	194, 283, 680, 1076, 1154, 1486
RsaNI	GTAC	6 cut(s)	193, 282, 679, 1075, 1153, 1485
RseI	CAYNNNNRTG	3 cut(s)	525, 1643, 1701
SacI	GAGCTC	1 cut(s)	1675
SaqAI	TTAA	3 cut(s)	975, 1274, 1386
SatI	GCNGC	4 cut(s)	1725, 1794, 1873, 2093
Sau96I	GGNCC	1 cut(s)	1918
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	5 cut(s)	342, 811, 1866, 1915, 2000
SduI	GDGCHC	5 cut(s)	788, 1186, 1198, 1675, 1752
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	6 cut(s)	107, 380, 796, 1020, 1113, 1693
SfcI	CTRYAG	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	1739
SfuI	TTCGAA	3 cut(s)	930, 1133, 1264
SinI	GGWCC	1 cut(s)	1918
SlaI	CTCGAG	1 cut(s)	1739
SmiMI	CAYNNNNRTG	3 cut(s)	525, 1643, 1701
SmlI	CTYRAG	4 cut(s)	396, 920, 1315, 1739
SmoI	CTYRAG	4 cut(s)	396, 920, 1315, 1739
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	1117, 2029
SspMI	CTAG	3 cut(s)	1007, 1190, 1430
SstI	GAGCTC	1 cut(s)	1675
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	5 cut(s)	340, 809, 1864, 1913, 1998
TaaI	ACNGT	3 cut(s)	452, 1760, 2243
TaiI	ACGT	6 cut(s)	461, 619, 834, 915, 1416, 1827
TatI	WGTACW	4 cut(s)	192, 281, 1152, 1484
Tru1I	TTAA	3 cut(s)	975, 1274, 1386
Tru9I	TTAA	3 cut(s)	975, 1274, 1386
TscAI	CASTG	3 cut(s)	35, 228, 1110
TseFI	GTSAC	3 cut(s)	722, 1923, 2156
TseI	GCWGC	4 cut(s)	1724, 1793, 1872, 2092
Tsp45I	GTSAC	3 cut(s)	722, 1923, 2156
TspGWI	ACGGA	3 cut(s)	453, 1404, 1753
TspRI	CASTG	3 cut(s)	35, 228, 1110
VneI	GTGCAC	1 cut(s)	1182
VpaK11BI	GGWCC	1 cut(s)	1918
XapI	RAATTY	3 cut(s)	290, 799, 1349
XceI	RCATGY	4 cut(s)	215, 889, 1285, 1642
XhoI	CTCGAG	1 cut(s)	1739
XmnI	GAANNNNTTC	3 cut(s)	479, 1091, 1520
XspI	CTAG	3 cut(s)	1007, 1190, 1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.