Rorug05G0446800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007750
Physical Location & Seq
Forward (+)
61868381 .. 61869678
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0446800.1

Sequence Viewer

Length: 387 bp
ATGGGCTTTGGGCTACAAATTAATCGGGCCCGAGCTTCTGAGGTGATCTGGACACCCAGGCTTTTTTCCTTCGGACTTAAATCAAGCCCAGCTGTATTTCTTGCCTCTAGCTCATCAAAAACATTGATTATCACCTGTTCTTTATCTCCAGCGCAGAGTCAGATTGAGCATCCAGTTCAACAGTTAGACGAGCGACTGGTGTCCAAAGTTGGTGCCCATTTTGATCTCGAGTTGCTAGAAGCACTCCAAGAGAACATCAAGGGTGAGCTTTTCTCTCCAGACACCGATTTTGATGATTTGTCTTGCTTAGTCAATTCTTTGTGTGGCTTGTTTGCAGTGGTGCAAGGCCATTTGTTGTGTTGCGGTGGAAGGGAAGGCAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

5.53

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 1 cut(s) 363
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 4 cut(s) 35, 92, 111, 268
AluI AGCT 4 cut(s) 35, 92, 111, 268
Ama87I CYCGRG 2 cut(s) 30, 227
AoxI GGCC 2 cut(s) 27, 346
ApaI GGGCCC 1 cut(s) 31
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AseI ATTAAT 1 cut(s) 21
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 27, 28
AsuHPI GGTGA 3 cut(s) 55, 124, 275
AvaI CYCGRG 2 cut(s) 30, 227
BaeGI GKGCMC 2 cut(s) 31, 217
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 58
BfaI CTAG 2 cut(s) 108, 236
Bme1390I CCNGG 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 30, 227
BmgT120I GGNCC 2 cut(s) 27, 28
BmiI GGNNCC 2 cut(s) 29, 214
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 178
BoxI GACNNNNGTC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 2 cut(s) 132, 261
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 173, 201
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 173, 201
BseSI GKGCMC 2 cut(s) 31, 217
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 29, 348
BshNI GGYRCC 1 cut(s) 212
BsiHKCI CYCGRG 2 cut(s) 30, 227
BsnI GGCC 2 cut(s) 29, 348
BsoBI CYCGRG 2 cut(s) 30, 227
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 31, 217
Bsp143I GATC 2 cut(s) 45, 223
BspACI CCGC 1 cut(s) 363
BspANI GGCC 2 cut(s) 29, 348
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 29, 214
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 173, 201
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 45, 223
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 39, 307
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 48, 226
BstMBI GATC 2 cut(s) 45, 223
BstNI CCWGG 1 cut(s) 58
BstPAI GACNNNNGTC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 31, 217
BsuRI GGCC 2 cut(s) 29, 348
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 27, 28
DdeI CTNAG 2 cut(s) 39, 307
DpnI GATC 2 cut(s) 47, 225
DpnII GATC 2 cut(s) 45, 223
Eco24I GRGCYC 1 cut(s) 31
Eco88I CYCGRG 2 cut(s) 30, 227
EcoRII CCWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 31
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 31
FspBI CTAG 2 cut(s) 108, 236
GlaI GCGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 132, 261
HaeIII GGCC 2 cut(s) 29, 348
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 157
HphI GGTGA 3 cut(s) 55, 124, 275
Hpy188I TCNGA 3 cut(s) 40, 74, 162
Hpy188III TCNNGA 3 cut(s) 49, 227, 278
HpyAV CCTTC 3 cut(s) 79, 363, 368
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 335, 343
HpyF3I CTNAG 2 cut(s) 39, 307
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 45, 223
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 108, 236
MalI GATC 2 cut(s) 47, 225
MboI GATC 2 cut(s) 45, 223
MhlI GDGCHC 2 cut(s) 31, 217
MluCI AATT 2 cut(s) 18, 313
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 34, 115
MseI TTAA 2 cut(s) 21, 78
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
NdeII GATC 2 cut(s) 45, 223
NlaIV GGNNCC 2 cut(s) 29, 214
PaeR7I CTCGAG 1 cut(s) 227
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PshAI GACNNNNGTC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 29, 214
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 27, 28
PvuII CAGCTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 21, 78
Sau3AI GATC 2 cut(s) 45, 223
Sau96I GGNCC 2 cut(s) 27, 28
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 31, 217
SetI ASST 6 cut(s) 37, 45, 94, 113, 137, 270
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 18, 313
SsiI CCGC 1 cut(s) 363
SspMI CTAG 2 cut(s) 108, 236
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 18, 313
Tru1I TTAA 2 cut(s) 21, 78
Tru9I TTAA 2 cut(s) 21, 78
TscAI CASTG 1 cut(s) 342
TspRI CASTG 1 cut(s) 342
VspI ATTAAT 1 cut(s) 21
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 2 cut(s) 108, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.