Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Forward (+)

82647939 .. 82650100

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG523600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTTTCAACACTTTCCCTCCATCTTCCTCCTCTGAACCACACGCAGTCCCCAACTTCACAAAACCTCACACCCCATCATCATCATCTTCTCCACACCTTCACCTCCCCATTTGAGCTCAAACAACTCCATGCCCACCTCATCAAAACCAACACTCCCCTCTCCACCCTCCCTCCCACCCGAATCGCCTTCGCCTGCTCTCTCACTCCCACCTTCTCCTACGCCCAGAAACTCTTCCAACACCTCGAATACCCCGATATCCCTGCCTGGAATTCCTGCCTGAAGGCCTTCGCCGAAGGCGATGAGCCCGTTGATGCAATGCTGCTCTTCCATCAGCTGCGTTGCTTCAATGTAATTCCTGACAGTTTCACTCTGTCTTTTGTTCTAAAGGCCTGTACCCGCTTGTTGGATTTTCACACTGGTAGAGTGCTACATGGCTATGTGGAGAAGCTTGGGTTTCGGTCCAATCTGTTTTTGATGAATATGATTCTGAATTTGTATGCATTGTGTGGCGAAATTAGGGATGCACGGCTGATGTTTGATAAAATGCCGCAGAGGGATGTTGTCACGTGGAATATAATGATGACTCTGTTGGTGAAGAGAGGTGATATAGAGCAAGCTTATGATTTGTTTTCGGGGATGCCAGATAGAAGTGTGAGGTCGTGGACGCTGATGATTTCGGGGTTTGGTCAGTGCGGTAAGCCTAAGGAGGCGATTCGTGTGTTTTTGGAGATGGAGGAGGCTGGTGTGAGGGCAAATGAGATTCTAGTTGAACTGGGCTACGATTTGAACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

265

Amino Acids

30.28

Weight (kDa)

6.49

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	186 - 219	2.8e-08	PPR repeat family
PPR_2	PF13041	218 - 254	1.1e-06	PPR repeat family
PPR	PF01535	221 - 250	1.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	400, 551, 696
AcsI	RAATTY	2 cut(s)	271, 493
AcuI	CTGAAG	1 cut(s)	302
AcvI	CACGTG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	9, 349, 773, 790
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	118, 337, 451, 620
AluI	AGCT	4 cut(s)	118, 337, 451, 620
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	285, 390
ApeKI	GCWGC	2 cut(s)	322, 337
ApoI	RAATTY	2 cut(s)	271, 493
Asp700I	GAANNNNTTC	2 cut(s)	233, 287
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	94, 607, 617
AvaII	GGWCC	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	705
BanII	GRGCYC	2 cut(s)	120, 309
BbrPI	CACGTG	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	309, 324
BccI	CCATC	4 cut(s)	30, 84, 339, 727
BceAI	ACGGC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	268
BfaI	CTAG	2 cut(s)	767, 796
BisI	GCNGC	3 cut(s)	323, 338, 551
BlsI	GCNGC	3 cut(s)	324, 339, 552
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	3 cut(s)	304, 514, 630
BmuI	ACTGGG	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	570
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 139, 157, 169, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	424, 780
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	268
BseGI	GGATG	3 cut(s)	529, 565, 645
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	424, 780
BseRI	GAGGAG	2 cut(s)	21, 752
BseXI	GCAGC	2 cut(s)	309, 324
BshFI	GGCC	2 cut(s)	287, 392
BsiHKAI	GWGCWC	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	287, 392
Bsp1286I	GDGCHC	2 cut(s)	120, 309
BspACI	CCGC	3 cut(s)	400, 551, 696
BspANI	GGCC	2 cut(s)	287, 392
BspQI	GCTCTTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	424, 780
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	3 cut(s)	239, 332, 593
BstBAI	YACGTR	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	196, 618
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	3 cut(s)	529, 565, 645
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	309, 324
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	287, 392
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	529, 565, 645
BtsIMutI	CAGTG	2 cut(s)	417, 698
Cac8I	GCNNGC	2 cut(s)	196, 618
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	2 cut(s)	131, 434
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	705
Eam1104I	CTCTTC	3 cut(s)	239, 332, 593
EarI	CTCTTC	3 cut(s)	239, 332, 593
Ecl136II	GAGCTC	1 cut(s)	118
Eco147I	AGGCCT	2 cut(s)	287, 392
Eco24I	GRGCYC	2 cut(s)	120, 309
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	302
Eco72I	CACGTG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	705
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	120, 309
FaeI	CATG	2 cut(s)	134, 437
FaiI	YATR	8 cut(s)	132, 435, 441, 485, 501, 578, 611, 624
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	130, 433
FauI	CCCGC	1 cut(s)	407
Fnu4HI	GCNGC	3 cut(s)	323, 338, 551
FokI	GGATG	3 cut(s)	536, 572, 652
FriOI	GRGCYC	2 cut(s)	120, 309
Fsp4HI	GCNGC	3 cut(s)	323, 338, 551
FspBI	CTAG	2 cut(s)	767, 796
GluI	GCNGC	3 cut(s)	323, 338, 551
HaeIII	GGCC	2 cut(s)	287, 392
HgaI	GACGC	1 cut(s)	676
Hin1II	CATG	2 cut(s)	134, 437
HindIII	AAGCTT	2 cut(s)	449, 618
HinfI	GANTC	5 cut(s)	183, 487, 586, 715, 763
HphI	GGTGA	3 cut(s)	94, 607, 617
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	2 cut(s)	36, 492
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	666
HpyAV	CCTTC	6 cut(s)	109, 199, 223, 277, 290, 298
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	317, 503, 527
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	2 cut(s)	134, 437
LguI	GCTCTTC	1 cut(s)	332
Lsp1109I	GCAGC	2 cut(s)	309, 324
LweI	GCATC	3 cut(s)	304, 514, 630
MaeI	CTAG	2 cut(s)	767, 796
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	565
MboII	GAAGA	5 cut(s)	17, 80, 226, 319, 610
MhlI	GDGCHC	2 cut(s)	120, 309
MluCI	AATT	4 cut(s)	271, 354, 493, 516
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	2 cut(s)	262, 387
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	2 cut(s)	233, 287
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	134, 437
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	505
PceI	AGGCCT	2 cut(s)	287, 392
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 297, 789
PdmI	GAANNNNTTC	2 cut(s)	233, 287
PfeI	GAWTC	4 cut(s)	183, 487, 715, 763
PkrI	GCNGC	3 cut(s)	324, 339, 552
PleI	GAGTC	1 cut(s)	580
PmaCI	CACGTG	1 cut(s)	570
PmlI	CACGTG	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	332
SatI	GCNGC	3 cut(s)	323, 338, 551
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	2 cut(s)	120, 309
SfaNI	GCATC	3 cut(s)	304, 514, 630
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	4 cut(s)	271, 354, 493, 516
SseBI	AGGCCT	2 cut(s)	287, 392
SsiI	CCGC	3 cut(s)	400, 551, 696
SspMI	CTAG	2 cut(s)	767, 796
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	2 cut(s)	287, 392
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	4 cut(s)	271, 354, 493, 516
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	4 cut(s)	183, 487, 715, 763
TscAI	CASTG	2 cut(s)	424, 698
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	322, 337
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	424, 698
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	271, 493
XmnI	GAANNNNTTC	2 cut(s)	233, 287
XspI	CTAG	2 cut(s)	767, 796
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.