Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Forward (+)

82226057 .. 82227247

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCTTTCAACACTTTCCCTCCATCTTCCTCCTCCACCTCTCAACCACACCCAGTCCCCAACTTCACAAAACCTCACACCCCATCATCATCTTCTCCACACCTTCACCTCCCCATTAAAACAACTCCATGCCCACCTCATCAAAACCAACACTCCCCTCTCCACCCTCCCTCCCACCCGAATCGCCTTTGCTTGCGCTCTCACTCCCAGCTTCTCCTACGCCCAGAAACTCTTCCAACACCTCGACTACCCCGATATCCCTACCTGGAATTCCTGCCTGAAGGCCTTCGCCGAAGGCGACGAGCCCATTGATGCAATGCTGCTCTTCCATCAGCTGCATAACCTGCGTTGCTTCAATGTGATTCCTGACAGTTTCAGTCTGTCTTTTGTTCTAAAGGCCTGTACCCGCTTGTTGGATTTTCACACTGGTAGAGTGCTACATGGCTATGTGGAGAAGCTTGGGTTTTGGTCCAATCTGTTTATGATGAATATGATTCTGAATTTGTATGCATTGTGTGGGGAAATTAGGGATGCACGGCTGATGTTTGATAAAATGCCGCAGAGAGATGTTGTCACGTGGAATATAATGATGACTCTGTTGGTGAAGAGAGGTGATATAGAGCAAGCTTATGATTTGTTTTCGGGGATGCCGGATAGAATTGTGAGGTCATGGACGCTGATGATTTCGGGGTTTGGTCAGTGCGGTAAGCCTAAGGAGGCGATTCGTGTGTTTTTGGAGATGGAGGAGGCTGGTGTGAGGGCAAATGAGGTGACTGTAGTGGCGGTTCTTGCGGCTTGTACTGATTTGGGTGACTTGGATTTGGGTAGGAGAGTTCATGAGTACTCGAGCCAAAGTGGGTTTGGAAGAAATGTTTGGATTTGTAACACGCTGATTGAGAAGTATGTCAAATGTGGGTGTTTGGAGGATGCTTGTAGAGTTTTTGATGCGATGGAAGAACGATCGGTTGTGTCATGGTCAGCTATGATTTCAGGGCTGGCCATGCATGGACAAGCTGAGGAAGCTTTGAGACTTTTCTCTAGCATGATTCAGATAGGGATGGAGCCAAATTATGTAACTTTTGTTGGACTCCTGCATGCTTGTAGCCACATGGGGTTTGTGGACAAGGGTCGTGAGTTCTTAGCCAGAATGACTGCAGATTATGGTATAGTTCCGAAAATTGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

395

Amino Acids

44.6

Weight (kDa)

6.4

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 219	2.2e-07	PPR repeat family
PPR_2	PF13041	222 - 266	3.4e-08	PPR repeat family
PPR	PF01535	223 - 252	1.9e-08	PPR repeat
PPR_2	PF13041	321 - 368	1.2e-10	PPR repeat family
PPR	PF01535	323 - 352	1.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AciI	CCGC	5 cut(s)	406, 557, 702, 782, 791
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	2 cut(s)	268, 499
AcuI	CTGAAG	1 cut(s)	299
AcvI	CACGTG	1 cut(s)	576
AfaI	GTAC	3 cut(s)	403, 799, 842
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	9, 355
AjnI	CCWGG	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	2 cut(s)	856, 888
AluBI	AGCT	7 cut(s)	210, 334, 457, 626, 980, 1013, 1022
AluI	AGCT	7 cut(s)	210, 334, 457, 626, 980, 1013, 1022
Alw26I	GTCTC	1 cut(s)	1021
Ama87I	CYCGRG	1 cut(s)	844
AoxI	GGCC	3 cut(s)	282, 396, 996
ApeKI	GCWGC	2 cut(s)	319, 334
ApoI	RAATTY	2 cut(s)	268, 499
Asp700I	GAANNNNTTC	2 cut(s)	230, 284
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	5 cut(s)	97, 613, 623, 781, 821
AvaI	CYCGRG	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	998
BanII	GRGCYC	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	576
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	2 cut(s)	306, 321
BccI	CCATC	6 cut(s)	30, 90, 336, 733, 943, 1051
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	1021
BfaI	CTAG	1 cut(s)	1038
BfmI	CTRYAG	2 cut(s)	774, 1152
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	320, 335, 557, 792
BlsI	GCNGC	4 cut(s)	321, 336, 558, 793
BmcAI	AGTACT	1 cut(s)	842
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	1062
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	5 cut(s)	301, 520, 636, 916, 934
BmuI	ACTGGG	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	576
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 136, 154, 166, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	52, 430
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	265
BseGI	GGATG	4 cut(s)	535, 651, 931, 1062
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	2 cut(s)	52, 430
BseRI	GAGGAG	2 cut(s)	21, 758
BseXI	GCAGC	2 cut(s)	306, 321
BseYI	CCCAGC	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	962
BshFI	GGCC	3 cut(s)	284, 398, 998
BsiEI	CGRYCG	1 cut(s)	962
BsiHKCI	CYCGRG	1 cut(s)	844
BsiSI	CCGG	1 cut(s)	650
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	1021
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	284, 398, 998
BsoBI	CYCGRG	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	959
BspACI	CCGC	5 cut(s)	406, 557, 702, 782, 791
BspANI	GGCC	3 cut(s)	284, 398, 998
BspCNI	CTCAG	1 cut(s)	1006
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	1062
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	52, 430
BssMI	GATC	1 cut(s)	959
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	371, 775
Bst6I	CTCTTC	3 cut(s)	236, 329, 599
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	193, 624, 996, 1095
BstDEI	CTNAG	3 cut(s)	711, 1014, 1138
BstF5I	GGATG	4 cut(s)	535, 651, 931, 1062
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	962
BstMAI	GTCTC	1 cut(s)	1021
BstMBI	GATC	1 cut(s)	959
BstMCI	CGRYCG	1 cut(s)	962
BstMWI	GCNNNNNNNGC	4 cut(s)	343, 788, 1000, 1019
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	1097
BstPAI	GACNNNNGTC	1 cut(s)	1125
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	774, 1152
BstV1I	GCAGC	2 cut(s)	306, 321
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	284, 398, 998
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	4 cut(s)	535, 651, 931, 1062
BtsIMutI	CAGTG	2 cut(s)	423, 704
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	193, 624, 996, 1095
CciI	TCATGA	1 cut(s)	835
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	402, 798, 841
CviQI	GTAC	3 cut(s)	402, 798, 841
DdeI	CTNAG	3 cut(s)	711, 1014, 1138
DpnI	GATC	1 cut(s)	961
DpnII	GATC	1 cut(s)	959
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	3 cut(s)	236, 329, 599
EarI	CTCTTC	3 cut(s)	236, 329, 599
Eco147I	AGGCCT	2 cut(s)	284, 398
Eco24I	GRGCYC	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	576
Eco81I	CCTNAGG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	844
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	256
EcoT22I	ATGCAT	2 cut(s)	511, 1005
EcoT38I	GRGCYC	1 cut(s)	306
FaqI	GGGAC	1 cut(s)	40
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	4 cut(s)	320, 335, 557, 792
FokI	GGATG	4 cut(s)	542, 658, 938, 1069
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	320, 335, 557, 792
FspBI	CTAG	1 cut(s)	1038
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	4 cut(s)	320, 335, 557, 792
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	284, 398, 998
HapII	CCGG	1 cut(s)	650
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	3 cut(s)	455, 624, 1020
HinfI	GANTC	7 cut(s)	180, 361, 493, 592, 721, 1045, 1086
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	5 cut(s)	97, 613, 623, 781, 821
Hpy166II	GTNNAC	1 cut(s)	1120
Hpy188I	TCNGA	3 cut(s)	498, 1050, 1173
Hpy188III	TCNNGA	3 cut(s)	365, 836, 1130
Hpy8I	GTNNAC	1 cut(s)	1120
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	4 cut(s)	112, 274, 287, 295
HpyCH4III	ACNGT	2 cut(s)	371, 775
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	7 cut(s)	314, 337, 509, 533, 1003, 1093, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	343, 788, 1000, 1019
HpyF3I	CTNAG	3 cut(s)	711, 1014, 1138
HpySE526I	ACGT	1 cut(s)	575
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	959
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	1060
Lsp1109I	GCAGC	2 cut(s)	306, 321
LweI	GCATC	5 cut(s)	301, 520, 636, 916, 934
MaeI	CTAG	1 cut(s)	1038
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	5 cut(s)	571, 769, 809, 881, 1072
MalI	GATC	1 cut(s)	961
MboI	GATC	1 cut(s)	959
MboII	GAAGA	7 cut(s)	17, 83, 223, 316, 616, 876, 965
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	998
MluCI	AATT	6 cut(s)	268, 499, 522, 657, 1066, 1176
MluNI	TGGCCA	1 cut(s)	998
MlyI	GAGTC	2 cut(s)	586, 1080
MmeI	TCCRAC	3 cut(s)	259, 393, 1063
Mox20I	TGGCCA	1 cut(s)	998
Mph1103I	ATGCAT	2 cut(s)	511, 1005
MroXI	GAANNNNTTC	2 cut(s)	230, 284
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	650
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	343, 788, 1000, 1019
NdeII	GATC	1 cut(s)	959
NlaIV	GGNNCC	1 cut(s)	1062
NmuCI	GTSAC	3 cut(s)	571, 769, 809
NsiI	ATGCAT	2 cut(s)	511, 1005
NspI	RCATGY	1 cut(s)	1097
PaeI	GCATGC	1 cut(s)	1097
PaeR7I	CTCGAG	1 cut(s)	844
PagI	TCATGA	1 cut(s)	835
PceI	AGGCCT	2 cut(s)	284, 398
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 294
PdmI	GAANNNNTTC	2 cut(s)	230, 284
PfeI	GAWTC	5 cut(s)	180, 361, 493, 721, 1045
PkrI	GCNGC	4 cut(s)	321, 336, 558, 793
Ple19I	CGATCG	1 cut(s)	962
PleI	GAGTC	2 cut(s)	586, 1080
PmaCI	CACGTG	1 cut(s)	576
PmlI	CACGTG	1 cut(s)	576
PpsI	GAGTC	2 cut(s)	586, 1080
Ppu21I	YACGTR	1 cut(s)	576
PshAI	GACNNNNGTC	1 cut(s)	1125
Psp6I	CCWGG	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	1062
PspPI	GGNCC	1 cut(s)	468
PspXI	VCTCGAGB	1 cut(s)	844
PsrI	GAACNNNNNNTAC	2 cut(s)	768, 800
PstI	CTGCAG	1 cut(s)	1156
PvuI	CGATCG	1 cut(s)	962
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	403, 799, 842
RsaNI	GTAC	3 cut(s)	402, 798, 841
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	320, 335, 557, 792
Sau3AI	GATC	1 cut(s)	959
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	842
SchI	GAGTC	2 cut(s)	586, 1080
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	5 cut(s)	301, 520, 636, 916, 934
SfcI	CTRYAG	2 cut(s)	774, 1152
Sfr274I	CTCGAG	1 cut(s)	844
SinI	GGWCC	1 cut(s)	468
SlaI	CTCGAG	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
SphI	GCATGC	1 cut(s)	1097
Sse9I	AATT	6 cut(s)	268, 499, 522, 657, 1066, 1176
SseBI	AGGCCT	2 cut(s)	284, 398
SsiI	CCGC	5 cut(s)	406, 557, 702, 782, 791
SspMI	CTAG	1 cut(s)	1038
StuI	AGGCCT	2 cut(s)	284, 398
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	371, 775
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	243, 845
TasI	AATT	6 cut(s)	268, 499, 522, 657, 1066, 1176
TatI	WGTACW	2 cut(s)	797, 840
TauI	GCSGC	2 cut(s)	559, 794
TfiI	GAWTC	5 cut(s)	180, 361, 493, 721, 1045
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	430, 704
TseFI	GTSAC	3 cut(s)	571, 769, 809
TseI	GCWGC	2 cut(s)	319, 334
Tsp45I	GTSAC	3 cut(s)	571, 769, 809
TspDTI	ATGAA	2 cut(s)	500, 824
TspRI	CASTG	2 cut(s)	430, 704
VpaK11BI	GGWCC	1 cut(s)	468
XapI	RAATTY	2 cut(s)	268, 499
XceI	RCATGY	1 cut(s)	1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XhoI	CTCGAG	1 cut(s)	844
XmnI	GAANNNNTTC	2 cut(s)	230, 284
XspI	CTAG	1 cut(s)	1038
ZrmI	AGTACT	1 cut(s)	842
Zsp2I	ATGCAT	2 cut(s)	511, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.