Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Reverse (-)

39302627 .. 39305691

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTTCTTGTGGTGTTTCTGGGTTCGATTCAGTTTCTCAAGATTTCTCATTCTTGTTTTGAAACTGATCTTGAAATAATGATATTTGGGCTATATTTTGGATGGGAATTAAATTACATCGATTTTGGTCTAATTTTTTGCTTGCAGGTTAGAGCTGCTGAGCTTTGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTGTTAATGCAATAAGTGGAACAATTGCATATGAGCTTTATCAATTAGATTTTACAAATAAACATCAACTTCAACTACCTTTAAGGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAAGCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

284

Amino Acids

32.9

Weight (kDa)

7.01

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	2 cut(s)	431, 523
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	411, 560
AgsI	TTSAA	5 cut(s)	62, 74, 302, 709, 724
AhlI	ACTAGT	1 cut(s)	175
AluBI	AGCT	8 cut(s)	155, 163, 265, 416, 434, 596, 824, 852
AluI	AGCT	8 cut(s)	155, 163, 265, 416, 434, 596, 824, 852
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	4 cut(s)	228, 384, 566, 732
AlwI	GGATC	2 cut(s)	431, 523
AlwNI	CAGNNNCTG	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	155, 596
Asp700I	GAANNNNTTC	1 cut(s)	810
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	629, 796
AvaII	GGWCC	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	2 cut(s)	142, 583
BccI	CCATC	3 cut(s)	96, 709, 796
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	4 cut(s)	228, 384, 566, 732
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	3 cut(s)	176, 378, 614
BfuAI	ACCTGC	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	156, 597
BlnI	CCTAGG	1 cut(s)	613
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	2 cut(s)	157, 598
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	487
Bpu10I	CCTNAGC	2 cut(s)	210, 833
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	23, 714
Bsa29I	ATCGAT	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	419, 613, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	3 cut(s)	458, 575, 675
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	419, 613, 789
BseGI	GGATG	2 cut(s)	107, 799
BseMI	GCAATG	3 cut(s)	458, 575, 675
BseMII	CTCAG	6 cut(s)	150, 224, 558, 807, 816, 847
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	142, 583
BsgI	GTGCAG	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	610, 672
BsmAI	GTCTC	4 cut(s)	228, 384, 566, 732
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	610, 672
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	5 cut(s)	67, 423, 515, 619, 843
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	580
BspCNI	CTCAG	6 cut(s)	151, 223, 559, 808, 817, 846
BspDI	ATCGAT	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	431, 523
BsrDI	GCAATG	3 cut(s)	458, 575, 675
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	419, 613, 789
BssMI	GATC	5 cut(s)	67, 423, 515, 619, 843
BssT1I	CCWWGG	2 cut(s)	613, 789
Bst4CI	ACNGT	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	6 cut(s)	159, 210, 567, 816, 825, 833
BstDSI	CCRYGG	1 cut(s)	419
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	2 cut(s)	107, 799
BstKTI	GATC	5 cut(s)	70, 426, 518, 622, 846
BstMAI	GTCTC	4 cut(s)	228, 384, 566, 732
BstMBI	GATC	5 cut(s)	67, 423, 515, 619, 843
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 596
BstPI	GGTNACC	1 cut(s)	784
BstV1I	GCAGC	2 cut(s)	142, 583
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	107, 799
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	410, 559
CviAII	CATG	1 cut(s)	512
CviQI	GTAC	2 cut(s)	410, 559
DdeI	CTNAG	6 cut(s)	159, 210, 567, 816, 825, 833
DpnI	GATC	5 cut(s)	69, 425, 517, 621, 845
DpnII	GATC	5 cut(s)	67, 423, 515, 619, 843
Eco130I	CCWWGG	2 cut(s)	613, 789
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	784
EcoO65I	GGTNACC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	613, 789
ErhI	CCWWGG	2 cut(s)	613, 789
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	515
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	610, 672
FatI	CATG	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	2 cut(s)	156, 597
FokI	GGATG	2 cut(s)	114, 806
Fsp4HI	GCNGC	2 cut(s)	156, 597
FspBI	CTAG	3 cut(s)	176, 378, 614
GluI	GCNGC	2 cut(s)	156, 597
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	515
HinfI	GANTC	4 cut(s)	28, 563, 674, 695
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	629, 796
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	6 cut(s)	40, 71, 225, 350, 548, 815
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4V	TGCA	8 cut(s)	145, 239, 257, 463, 590, 599, 668, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 596
HpyF3I	CTNAG	6 cut(s)	159, 210, 567, 816, 825, 833
Hsp92II	CATG	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	5 cut(s)	67, 423, 515, 619, 843
LmnI	GCTCC	2 cut(s)	421, 655
Lsp1109I	GCAGC	2 cut(s)	142, 583
MaeI	CTAG	3 cut(s)	176, 378, 614
MaeIII	GTNAC	3 cut(s)	503, 688, 784
MalI	GATC	5 cut(s)	69, 425, 517, 621, 845
MboI	GATC	5 cut(s)	67, 423, 515, 619, 843
MboII	GAAGA	2 cut(s)	482, 492
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	9 cut(s)	107, 112, 132, 252, 272, 399, 713, 756, 797
MlyI	GAGTC	3 cut(s)	572, 683, 689
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	3 cut(s)	562, 763, 842
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	4 cut(s)	110, 234, 311, 752
MspI	CCGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	538, 596
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	5 cut(s)	67, 423, 515, 619, 843
NlaIII	CATG	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	688, 784
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	157, 598
PleI	GAGTC	3 cut(s)	571, 682, 689
PpsI	GAGTC	3 cut(s)	571, 682, 689
PspEI	GGTNACC	1 cut(s)	784
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	2 cut(s)	411, 560
RsaNI	GTAC	2 cut(s)	410, 559
SaqAI	TTAA	4 cut(s)	110, 234, 311, 752
SatI	GCNGC	2 cut(s)	156, 597
Sau3AI	GATC	5 cut(s)	67, 423, 515, 619, 843
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	3 cut(s)	572, 683, 689
SduI	GDGCHC	1 cut(s)	472
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	38, 729
SmoI	CTYRAG	2 cut(s)	38, 729
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	9 cut(s)	107, 112, 132, 252, 272, 399, 713, 756, 797
SsiI	CCGC	1 cut(s)	580
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	3 cut(s)	176, 378, 614
StyI	CCWWGG	2 cut(s)	613, 789
TaaI	ACNGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	26, 120, 226, 337
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	9 cut(s)	107, 112, 132, 252, 272, 399, 713, 756, 797
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	4 cut(s)	110, 234, 311, 752
Tru9I	TTAA	4 cut(s)	110, 234, 311, 752
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	688, 784
TseI	GCWGC	2 cut(s)	155, 596
Tsp45I	GTSAC	2 cut(s)	688, 784
TspDTI	ATGAA	2 cut(s)	369, 810
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	3 cut(s)	176, 378, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.