Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Forward (+)

82227249 .. 82228035

Gene Structure 787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTTGATCTCTTAAGCCGCGCAGGGCTCCTTCAAGAGGCTCACGAGTTTATCATGAACATGCCTATCAAACCAAATGGTGTTGTGTGGGGAGCTCTCCTTGGTGGATGCAAAGTTCACAGAAACATTGAACTGGCTGAAGAAGCAACAAAGCACCTTTCTGAACTGGATCCACTGAATGATGGATACTACATTGTTTTGTCAAACATTTATGCAGAAGCACAACGGTGGGAAGACGTGGCGAGAGTGAGAAGACTAATGAGGGATCGAGGGGTGAAGAAGACACCTGGCTGGAGCTCAATCACGGTAGATGGAGTGCTTCATGAGTTTGTTGCTGGGGATGAAGCCCATCCTCAAGCCGAGGAGATTGACCAAATATGGGAGAAACTACTTGAAAGAATGAAGATGAAGGGTTATGTACCCAACACTTCAGTTGTTCTACTAGACATGGAAGAGGATCAAAAGGAGAAATTTCTCAATCGCCATAGCGAGAAATTAGCGCTGGTTTTTGGGCTGATCAAAACGAAACCTGGAACACCAATTCGAATTATGAAGAATCTTCGTGTTTGTGTGGACTGTCATGCTGCTTTGAAACTTGTATCAGAAATTGCCGACAGAGAGATAGTTGTGCGTGACCGAAATTGGTTCCATTGTTTCAAAAAAGGTTATTGTTCCTGCAGGGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

230

Amino Acids

26.5

Weight (kDa)

6.71

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 101	1.1e-22	E motif
Eplus_motif	PF20430	108 - 134	8.5e-06	E+ motif
DYW_deaminase	PF14432	138 - 230	2.9e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	4 cut(s)	164, 177, 273, 465
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	159, 414
AfaI	GTAC	1 cut(s)	420
AfeI	AGCGCT	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	37, 379
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	35, 131, 395, 592, 658
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	286, 529
AleI	CACNNNNGTG	1 cut(s)	226
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	95, 297
AluI	AGCT	2 cut(s)	95, 297
Alw21I	GWGCWC	2 cut(s)	97, 299
AlwI	GGATC	4 cut(s)	164, 177, 273, 465
Aor51HI	AGCGCT	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	23, 502
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	169
BanII	GRGCYC	3 cut(s)	30, 97, 299
BauI	CACGAG	1 cut(s)	44
BbsI	GAAGAC	3 cut(s)	240, 259, 287
Bbv12I	GWGCWC	2 cut(s)	97, 299
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	3 cut(s)	176, 305, 357
BciT130I	CCWGG	2 cut(s)	288, 531
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	516
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	676
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	19, 585
BlsI	GCNGC	2 cut(s)	20, 586
Bme1390I	CCNGG	2 cut(s)	288, 531
BmgBI	CACGTC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	29, 171, 647
BmrFI	CCNGG	2 cut(s)	288, 531
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	3 cut(s)	240, 259, 287
BpmI	CTGGAG	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	100, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 379
Bse1I	ACTGG	3 cut(s)	138, 171, 692
BseBI	CCWGG	2 cut(s)	288, 531
BseDI	CCNNGG	2 cut(s)	100, 360
BseGI	GGATG	3 cut(s)	113, 346, 349
BseLI	CCNNNNNNNGG	2 cut(s)	37, 379
BseNI	ACTGG	3 cut(s)	138, 171, 692
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	571
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	97, 299
BslI	CCNNNNNNNGG	2 cut(s)	37, 379
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	3 cut(s)	30, 97, 299
Bsp143I	GATC	5 cut(s)	7, 169, 265, 457, 516
BspACI	CCGC	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	54, 322
BspLI	GGNNCC	3 cut(s)	29, 171, 647
BspMAI	CTGCAG	1 cut(s)	680
BspPI	GGATC	4 cut(s)	164, 177, 273, 465
BspT104I	TTCGAA	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	138, 171, 692
BssECI	CCNNGG	2 cut(s)	100, 360
BssMI	GATC	5 cut(s)	7, 169, 265, 457, 516
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	288, 531
Bst4CI	ACNGT	3 cut(s)	228, 307, 578
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	113, 346, 349
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	2 cut(s)	23, 502
BstKTI	GATC	5 cut(s)	10, 172, 268, 460, 519
BstMBI	GATC	5 cut(s)	7, 169, 265, 457, 516
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	288, 531
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	286, 529
BstSFI	CTRYAG	1 cut(s)	676
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	3 cut(s)	240, 259, 287
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	113, 346, 349
BtsIMutI	CAGTG	1 cut(s)	173
CciI	TCATGA	2 cut(s)	54, 322
CfoI	GCGC	2 cut(s)	23, 502
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	5 cut(s)	55, 61, 323, 448, 581
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	5 cut(s)	9, 171, 267, 459, 518
DpnII	GATC	5 cut(s)	7, 169, 265, 457, 516
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	2 cut(s)	95, 297
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	3 cut(s)	30, 97, 299
Eco47III	AGCGCT	1 cut(s)	501
Eco53kI	GAGCTC	2 cut(s)	95, 297
Eco57I	CTGAAG	2 cut(s)	159, 414
EcoICRI	GAGCTC	2 cut(s)	95, 297
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	286, 529
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	3 cut(s)	30, 97, 299
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	5 cut(s)	58, 64, 326, 451, 584
FatI	CATG	5 cut(s)	54, 60, 322, 447, 580
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	19, 585
FokI	GGATG	3 cut(s)	120, 336, 353
FriOI	GRGCYC	3 cut(s)	30, 97, 299
Fsp4HI	GCNGC	2 cut(s)	19, 585
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	22, 501
GluI	GCNGC	2 cut(s)	19, 585
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	503
HhaI	GCGC	2 cut(s)	23, 502
Hin1II	CATG	5 cut(s)	58, 64, 326, 451, 584
Hin6I	GCGC	2 cut(s)	21, 500
HinP1I	GCGC	2 cut(s)	21, 500
HinfI	GANTC	1 cut(s)	556
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	118, 574
Hpy188I	TCNGA	2 cut(s)	163, 604
Hpy188III	TCNNGA	4 cut(s)	35, 44, 55, 323
Hpy8I	GTNNAC	2 cut(s)	118, 574
HpyAV	CCTTC	2 cut(s)	41, 403
HpyCH4III	ACNGT	3 cut(s)	228, 307, 578
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	111, 215, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	58, 64, 326, 451, 584
HspAI	GCGC	2 cut(s)	21, 500
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	5 cut(s)	7, 169, 265, 457, 516
LmnI	GCTCC	3 cut(s)	33, 92, 294
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	5 cut(s)	9, 171, 267, 459, 518
MboI	GATC	5 cut(s)	7, 169, 265, 457, 516
MboII	GAAGA	9 cut(s)	152, 245, 264, 289, 292, 415, 464, 551, 565
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	30, 97, 299
MluCI	AATT	6 cut(s)	470, 494, 540, 546, 606, 640
MnlI	CCTC	6 cut(s)	31, 255, 263, 355, 363, 448
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	59, 226
MspCI	CTTAAG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	288, 531
MvaI	CCWGG	2 cut(s)	288, 531
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	5 cut(s)	7, 169, 265, 457, 516
NlaIII	CATG	5 cut(s)	58, 64, 326, 451, 584
NlaIV	GGNNCC	3 cut(s)	29, 171, 647
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	544
OliI	CACNNNNGTG	1 cut(s)	226
PagI	TCATGA	2 cut(s)	54, 322
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	20, 586
Psp124BI	GAGCTC	2 cut(s)	97, 299
Psp6I	CCWGG	2 cut(s)	286, 529
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	286, 529
PspN4I	GGNNCC	3 cut(s)	29, 171, 647
PstI	CTGCAG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	59, 226
SacI	GAGCTC	2 cut(s)	97, 299
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	19, 585
Sau3AI	GATC	5 cut(s)	7, 169, 265, 457, 516
SbfI	CCTGCAGG	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	288, 531
SdaI	CCTGCAGG	1 cut(s)	680
SduI	GDGCHC	3 cut(s)	30, 97, 299
SetI	ASST	7 cut(s)	97, 159, 240, 289, 299, 532, 667
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	59, 226
SmlI	CTYRAG	2 cut(s)	13, 354
SmoI	CTYRAG	2 cut(s)	13, 354
Sse8387I	CCTGCAGG	1 cut(s)	680
Sse9I	AATT	6 cut(s)	470, 494, 540, 546, 606, 640
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	2 cut(s)	97, 299
StyD4I	CCNGG	2 cut(s)	286, 529
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	228, 307, 578
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	268, 544
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	470, 494, 540, 546, 606, 640
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	6 cut(s)	71, 311, 357, 416, 422, 566
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.