Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15930 |
| fragaria_vesca | FvH4_3g42650 |
| malus_domestica | MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1 |
| prunus_persica | Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1 |
| pyrus_communis | pycom17g21890 |
| rosa_chinensis | RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611 |
| rosa_laevigata | RLG00000019432 RLG00000036613 |
| rosa_multiflora | Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00005580 |
| rosa_rugosa | Rorug02G0321400 Rorug05G0446800 |
| rosa_samantha | Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300 |
| rosa_wichuraiana | Rw2G030420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 406, 1438 |
| AciI | CCGC | 5 cut(s) | 526, 702, 791, 855, 1837 |
| AclWI | GGATC | 6 cut(s) | 305, 1055, 1068, 1358, 1467, 1659 |
| AcsI | RAATTY | 6 cut(s) | 277, 472, 499, 831, 1133, 1664 |
| AcuI | CTGAAG | 4 cut(s) | 91, 1353, 1608, 1622 |
| AfaI | GTAC | 2 cut(s) | 403, 842 |
| AfeI | AGCGCT | 1 cut(s) | 1695 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1231, 1573 |
| AflIII | ACRYGT | 1 cut(s) | 404 |
| AgsI | TTSAA | 9 cut(s) | 9, 244, 289, 499, 1229, 1325, 1494, 1786, 1852 |
| AhlI | ACTAGT | 1 cut(s) | 1582 |
| AjnI | CCWGG | 2 cut(s) | 1480, 1723 |
| AleI | CACNNNNGTG | 2 cut(s) | 1420, 1483 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1293, 1325 |
| AluBI | AGCT | 8 cut(s) | 111, 124, 980, 1013, 1022, 1450, 1553, 1600 |
| AluI | AGCT | 8 cut(s) | 111, 124, 980, 1013, 1022, 1450, 1553, 1600 |
| Alw21I | GWGCWC | 2 cut(s) | 126, 1291 |
| Alw26I | GTCTC | 1 cut(s) | 1021 |
| AlwI | GGATC | 6 cut(s) | 305, 1055, 1068, 1358, 1467, 1659 |
| Aor51HI | AGCGCT | 1 cut(s) | 1695 |
| AoxI | GGCC | 2 cut(s) | 291, 758 |
| ApeKI | GCWGC | 1 cut(s) | 1778 |
| ApoI | RAATTY | 6 cut(s) | 277, 472, 499, 831, 1133, 1664 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 239, 293, 1665, 1838 |
| AspLEI | GCGC | 2 cut(s) | 1438, 1696 |
| AspS9I | GGNCC | 1 cut(s) | 1721 |
| AsuHPI | GGTGA | 7 cut(s) | 530, 623, 781, 821, 1132, 1480, 1522 |
| AvaII | GGWCC | 1 cut(s) | 1721 |
| AxyI | CCTNAGG | 1 cut(s) | 711 |
| BamHI | GGATCC | 1 cut(s) | 1060 |
| BanII | GRGCYC | 2 cut(s) | 126, 1224 |
| BbsI | GAAGAC | 2 cut(s) | 1434, 1481 |
| Bbv12I | GWGCWC | 2 cut(s) | 126, 1291 |
| BbvCI | CCTCAGC | 1 cut(s) | 1014 |
| BbvI | GCAGC | 1 cut(s) | 1765 |
| BccI | CCATC | 8 cut(s) | 33, 99, 733, 938, 1370, 1499, 1551, 1850 |
| BciT130I | CCWGG | 2 cut(s) | 1482, 1725 |
| BciVI | GTATCC | 1 cut(s) | 1373 |
| BcoDI | GTCTC | 1 cut(s) | 1021 |
| BcuI | ACTAGT | 1 cut(s) | 1582 |
| BfaI | CTAG | 3 cut(s) | 1038, 1583, 1637 |
| BfmI | CTRYAG | 3 cut(s) | 774, 933, 1870 |
| BfoI | RGCGCY | 1 cut(s) | 1697 |
| BfuI | GTATCC | 1 cut(s) | 1373 |
| BglII | AGATCT | 1 cut(s) | 1560 |
| BisI | GCNGC | 2 cut(s) | 792, 1779 |
| BlsI | GCNGC | 2 cut(s) | 793, 1780 |
| BmcAI | AGTACT | 1 cut(s) | 842 |
| Bme1390I | CCNGG | 2 cut(s) | 1482, 1725 |
| Bme18I | GGWCC | 1 cut(s) | 1721 |
| BmgT120I | GGNCC | 1 cut(s) | 1721 |
| BmiI | GGNNCC | 4 cut(s) | 1062, 1223, 1722, 1835 |
| BmrFI | CCNGG | 2 cut(s) | 1482, 1725 |
| BmrI | ACTGGG | 2 cut(s) | 210, 589 |
| BmsI | GCATC | 6 cut(s) | 310, 568, 636, 905, 916, 1292 |
| BmuI | ACTGGG | 2 cut(s) | 210, 589 |
| BpiI | GAAGAC | 2 cut(s) | 1434, 1481 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 914, 946 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1014, 1554 |
| BpuEI | CTTGAG | 2 cut(s) | 1107, 1533 |
| BsaJI | CCNNGG | 1 cut(s) | 1481 |
| BsaWI | WCCGGW | 1 cut(s) | 1830 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 125, 145, 175 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1231, 1573 |
| Bse1I | ACTGG | 4 cut(s) | 216, 595, 1332, 1886 |
| Bse21I | CCTNAGG | 1 cut(s) | 711 |
| BseBI | CCWGG | 2 cut(s) | 1482, 1725 |
| BseDI | CCNNGG | 1 cut(s) | 1481 |
| BseGI | GGATG | 9 cut(s) | 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1231, 1573 |
| BseMII | CTCAG | 4 cut(s) | 245, 252, 1005, 1568 |
| BseNI | ACTGG | 4 cut(s) | 216, 595, 1332, 1886 |
| BseRI | GAGGAG | 2 cut(s) | 24, 153 |
| BseXI | GCAGC | 1 cut(s) | 1765 |
| BseYI | CCCAGC | 1 cut(s) | 1529 |
| Bsh1236I | CGCG | 2 cut(s) | 406, 1438 |
| BshFI | GGCC | 2 cut(s) | 293, 760 |
| BsiHKAI | GWGCWC | 2 cut(s) | 126, 1291 |
| BsiSI | CCGG | 1 cut(s) | 1831 |
| BslFI | GGGAC | 2 cut(s) | 542, 1734 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1231, 1573 |
| BsmAI | GTCTC | 1 cut(s) | 1021 |
| BsmFI | GGGAC | 2 cut(s) | 542, 1734 |
| BsnI | GGCC | 2 cut(s) | 293, 760 |
| Bsp1286I | GDGCHC | 3 cut(s) | 126, 1224, 1291 |
| Bsp143I | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| BspACI | CCGC | 5 cut(s) | 526, 702, 791, 855, 1837 |
| BspANI | GGCC | 2 cut(s) | 293, 760 |
| BspCNI | CTCAG | 4 cut(s) | 244, 253, 1006, 1567 |
| BspFNI | CGCG | 2 cut(s) | 406, 1438 |
| BspHI | TCATGA | 2 cut(s) | 835, 1516 |
| BspLI | GGNNCC | 4 cut(s) | 1062, 1223, 1722, 1835 |
| BspMAI | CTGCAG | 1 cut(s) | 1874 |
| BspPI | GGATC | 6 cut(s) | 305, 1055, 1068, 1358, 1467, 1659 |
| BsrI | ACTGG | 4 cut(s) | 216, 595, 1332, 1886 |
| BssECI | CCNNGG | 1 cut(s) | 1481 |
| BssMI | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| Bst2UI | CCWGG | 2 cut(s) | 1482, 1725 |
| Bst4CI | ACNGT | 5 cut(s) | 13, 775, 937, 964, 1501 |
| Bst6I | CTCTTC | 2 cut(s) | 738, 1641 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 995 |
| BstC8I | GCNNGC | 2 cut(s) | 996, 1095 |
| BstDEI | CTNAG | 5 cut(s) | 231, 261, 711, 1014, 1554 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1229 |
| BstF5I | GGATG | 9 cut(s) | 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543 |
| BstFNI | CGCG | 2 cut(s) | 406, 1438 |
| BstH2I | RGCGCY | 1 cut(s) | 1697 |
| BstHHI | GCGC | 2 cut(s) | 1438, 1696 |
| BstKTI | GATC | 8 cut(s) | 313, 495, 1063, 1204, 1366, 1462, 1563, 1654 |
| BstMAI | GTCTC | 1 cut(s) | 1021 |
| BstMBI | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337 |
| BstNI | CCWGG | 2 cut(s) | 1482, 1725 |
| BstNSI | RCATGY | 2 cut(s) | 1097, 1258 |
| BstSCI | CCNGG | 2 cut(s) | 1480, 1723 |
| BstSFI | CTRYAG | 3 cut(s) | 774, 933, 1870 |
| BstUI | CGCG | 2 cut(s) | 406, 1438 |
| BstV1I | GCAGC | 1 cut(s) | 1765 |
| BstV2I | GAAGAC | 2 cut(s) | 1434, 1481 |
| BstX2I | RGATCY | 4 cut(s) | 310, 1060, 1363, 1560 |
| BstYI | RGATCY | 4 cut(s) | 310, 1060, 1363, 1560 |
| Bsu36I | CCTNAGG | 1 cut(s) | 711 |
| BsuI | GTATCC | 1 cut(s) | 1373 |
| BsuRI | GGCC | 2 cut(s) | 293, 760 |
| BtsCI | GGATG | 9 cut(s) | 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543 |
| BtsI | GCAGTG | 1 cut(s) | 1289 |
| BtsIMutI | CAGTG | 1 cut(s) | 1289 |
| Cac8I | GCNNGC | 2 cut(s) | 996, 1095 |
| CciI | TCATGA | 2 cut(s) | 835, 1516 |
| CfoI | GCGC | 2 cut(s) | 1438, 1696 |
| Cfr13I | GGNCC | 1 cut(s) | 1721 |
| CseI | GACGC | 1 cut(s) | 539 |
| Csp6I | GTAC | 2 cut(s) | 402, 841 |
| CviQI | GTAC | 2 cut(s) | 402, 841 |
| DdeI | CTNAG | 5 cut(s) | 231, 261, 711, 1014, 1554 |
| DpnI | GATC | 8 cut(s) | 312, 494, 1062, 1203, 1365, 1461, 1562, 1653 |
| DpnII | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| Eam1104I | CTCTTC | 2 cut(s) | 738, 1641 |
| EarI | CTCTTC | 2 cut(s) | 738, 1641 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco147I | AGGCCT | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 2 cut(s) | 126, 1224 |
| Eco47I | GGWCC | 1 cut(s) | 1721 |
| Eco47III | AGCGCT | 1 cut(s) | 1695 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| Eco57I | CTGAAG | 4 cut(s) | 91, 1353, 1608, 1622 |
| Eco81I | CCTNAGG | 1 cut(s) | 711 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1229 |
| EcoRI | GAATTC | 3 cut(s) | 277, 831, 1133 |
| EcoRII | CCWGG | 2 cut(s) | 1480, 1723 |
| EcoT22I | ATGCAT | 1 cut(s) | 1005 |
| EcoT38I | GRGCYC | 2 cut(s) | 126, 1224 |
| FaqI | GGGAC | 2 cut(s) | 542, 1734 |
| FauI | CCCGC | 3 cut(s) | 519, 695, 848 |
| Fnu4HI | GCNGC | 2 cut(s) | 792, 1779 |
| FokI | GGATG | 9 cut(s) | 428, 658, 927, 938, 961, 1054, 1314, 1530, 1547 |
| FriOI | GRGCYC | 2 cut(s) | 126, 1224 |
| Fsp4HI | GCNGC | 2 cut(s) | 792, 1779 |
| FspBI | CTAG | 3 cut(s) | 1038, 1583, 1637 |
| GlaI | GCGC | 2 cut(s) | 1437, 1695 |
| GluI | GCNGC | 2 cut(s) | 792, 1779 |
| GsaI | CCCAGC | 1 cut(s) | 1533 |
| HaeII | RGCGCY | 1 cut(s) | 1697 |
| HaeIII | GGCC | 2 cut(s) | 293, 760 |
| HapII | CCGG | 1 cut(s) | 1831 |
| HgaI | GACGC | 1 cut(s) | 539 |
| HhaI | GCGC | 2 cut(s) | 1438, 1696 |
| Hin6I | GCGC | 2 cut(s) | 1436, 1694 |
| HinP1I | GCGC | 2 cut(s) | 1436, 1694 |
| HindIII | AAGCTT | 1 cut(s) | 1020 |
| HinfI | GANTC | 6 cut(s) | 50, 189, 1045, 1086, 1513, 1750 |
| HpaII | CCGG | 1 cut(s) | 1831 |
| HphI | GGTGA | 7 cut(s) | 530, 623, 781, 821, 1132, 1480, 1522 |
| Hpy166II | GTNNAC | 2 cut(s) | 402, 1312 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 234, 1050, 1065, 1357, 1656 |
| Hpy188III | TCNNGA | 8 cut(s) | 496, 563, 571, 836, 1130, 1229, 1517, 1556 |
| Hpy8I | GTNNAC | 2 cut(s) | 402, 1312 |
| HpyAV | CCTTC | 7 cut(s) | 205, 283, 296, 304, 1235, 1597, 1651 |
| HpyCH4III | ACNGT | 5 cut(s) | 13, 775, 937, 964, 1501 |
| HpyCH4V | TGCA | 9 cut(s) | 323, 346, 439, 989, 1003, 1093, 1305, 1409, 1872 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337 |
| HpyF3I | CTNAG | 5 cut(s) | 231, 261, 711, 1014, 1554 |
| HspAI | GCGC | 2 cut(s) | 1436, 1694 |
| Kzo9I | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| LmnI | GCTCC | 3 cut(s) | 116, 1227, 1286 |
| Lsp1109I | GCAGC | 1 cut(s) | 1765 |
| LweI | GCATC | 6 cut(s) | 310, 568, 636, 905, 916, 1292 |
| MaeI | CTAG | 3 cut(s) | 1038, 1583, 1637 |
| MaeIII | GTNAC | 6 cut(s) | 13, 571, 769, 809, 1072, 1826 |
| MalI | GATC | 8 cut(s) | 312, 494, 1062, 1203, 1365, 1461, 1562, 1653 |
| MboI | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| MfeI | CAATTG | 1 cut(s) | 1800 |
| MflI | RGATCY | 4 cut(s) | 310, 1060, 1363, 1560 |
| MhlI | GDGCHC | 3 cut(s) | 126, 1224, 1291 |
| MluI | ACGCGT | 1 cut(s) | 404 |
| MlyI | GAGTC | 2 cut(s) | 44, 1080 |
| MmeI | TCCRAC | 3 cut(s) | 393, 906, 1063 |
| Mph1103I | ATGCAT | 1 cut(s) | 1005 |
| MroXI | GAANNNNTTC | 4 cut(s) | 239, 293, 1665, 1838 |
| MseI | TTAA | 3 cut(s) | 618, 1371, 1806 |
| MslI | CAYNNNNRTG | 5 cut(s) | 444, 564, 1145, 1420, 1483 |
| MspI | CCGG | 1 cut(s) | 1831 |
| MspR9I | CCNGG | 2 cut(s) | 1482, 1725 |
| MunI | CAATTG | 1 cut(s) | 1800 |
| MvaI | CCWGG | 2 cut(s) | 1482, 1725 |
| MvnI | CGCG | 2 cut(s) | 406, 1438 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337 |
| NdeII | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| NlaIV | GGNNCC | 4 cut(s) | 1062, 1223, 1722, 1835 |
| NmuCI | GTSAC | 5 cut(s) | 13, 571, 769, 809, 1826 |
| NsiI | ATGCAT | 1 cut(s) | 1005 |
| NspI | RCATGY | 2 cut(s) | 1097, 1258 |
| OliI | CACNNNNGTG | 2 cut(s) | 1420, 1483 |
| PaeI | GCATGC | 1 cut(s) | 1097 |
| PagI | TCATGA | 2 cut(s) | 835, 1516 |
| PceI | AGGCCT | 1 cut(s) | 293 |
| PdmI | GAANNNNTTC | 4 cut(s) | 239, 293, 1665, 1838 |
| PfeI | GAWTC | 4 cut(s) | 189, 1045, 1513, 1750 |
| PkrI | GCNGC | 2 cut(s) | 793, 1780 |
| PleI | GAGTC | 2 cut(s) | 44, 1080 |
| PpsI | GAGTC | 2 cut(s) | 44, 1080 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| Psp6I | CCWGG | 2 cut(s) | 1480, 1723 |
| PspFI | CCCAGC | 1 cut(s) | 1529 |
| PspGI | CCWGG | 2 cut(s) | 1480, 1723 |
| PspN4I | GGNNCC | 4 cut(s) | 1062, 1223, 1722, 1835 |
| PspPI | GGNCC | 1 cut(s) | 1721 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 768, 800 |
| PstI | CTGCAG | 1 cut(s) | 1874 |
| PsuI | RGATCY | 4 cut(s) | 310, 1060, 1363, 1560 |
| RsaI | GTAC | 2 cut(s) | 403, 842 |
| RsaNI | GTAC | 2 cut(s) | 402, 841 |
| RseI | CAYNNNNRTG | 5 cut(s) | 444, 564, 1145, 1420, 1483 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 3 cut(s) | 618, 1371, 1806 |
| SatI | GCNGC | 2 cut(s) | 792, 1779 |
| Sau3AI | GATC | 8 cut(s) | 310, 492, 1060, 1201, 1363, 1459, 1560, 1651 |
| Sau96I | GGNCC | 1 cut(s) | 1721 |
| SbfI | CCTGCAGG | 1 cut(s) | 1874 |
| ScaI | AGTACT | 1 cut(s) | 842 |
| SchI | GAGTC | 2 cut(s) | 44, 1080 |
| ScrFI | CCNGG | 2 cut(s) | 1482, 1725 |
| SdaI | CCTGCAGG | 1 cut(s) | 1874 |
| SduI | GDGCHC | 3 cut(s) | 126, 1224, 1291 |
| SfaNI | GCATC | 6 cut(s) | 310, 568, 636, 905, 916, 1292 |
| SfcI | CTRYAG | 3 cut(s) | 774, 933, 1870 |
| SinI | GGWCC | 1 cut(s) | 1721 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 444, 564, 1145, 1420, 1483 |
| SmlI | CTYRAG | 2 cut(s) | 1122, 1548 |
| SmoI | CTYRAG | 2 cut(s) | 1122, 1548 |
| SpeI | ACTAGT | 1 cut(s) | 1582 |
| SphI | GCATGC | 1 cut(s) | 1097 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1874 |
| SseBI | AGGCCT | 1 cut(s) | 293 |
| SsiI | CCGC | 5 cut(s) | 526, 702, 791, 855, 1837 |
| SspMI | CTAG | 3 cut(s) | 1038, 1583, 1637 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StuI | AGGCCT | 1 cut(s) | 293 |
| StyD4I | CCNGG | 2 cut(s) | 1480, 1723 |
| TaaI | ACNGT | 5 cut(s) | 13, 775, 937, 964, 1501 |
| TaqI | TCGA | 6 cut(s) | 187, 252, 470, 562, 1174, 1462 |
| TatI | WGTACW | 1 cut(s) | 840 |
| TauI | GCSGC | 1 cut(s) | 794 |
| TfiI | GAWTC | 4 cut(s) | 189, 1045, 1513, 1750 |
| Tru1I | TTAA | 3 cut(s) | 618, 1371, 1806 |
| Tru9I | TTAA | 3 cut(s) | 618, 1371, 1806 |
| TscAI | CASTG | 1 cut(s) | 1296 |
| TseFI | GTSAC | 5 cut(s) | 13, 571, 769, 809, 1826 |
| TseI | GCWGC | 1 cut(s) | 1778 |
| Tsp45I | GTSAC | 5 cut(s) | 13, 571, 769, 809, 1826 |
| TspDTI | ATGAA | 9 cut(s) | 344, 500, 824, 965, 1505, 1551, 1610, 1727, 1760 |
| TspGWI | ACGGA | 1 cut(s) | 658 |
| TspRI | CASTG | 1 cut(s) | 1296 |
| VpaK11BI | GGWCC | 1 cut(s) | 1721 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1229 |
| XapI | RAATTY | 6 cut(s) | 277, 472, 499, 831, 1133, 1664 |
| XceI | RCATGY | 2 cut(s) | 1097, 1258 |
| XmnI | GAANNNNTTC | 4 cut(s) | 239, 293, 1665, 1838 |
| XspI | CTAG | 3 cut(s) | 1038, 1583, 1637 |
| ZrmI | AGTACT | 1 cut(s) | 842 |
| Zsp2I | ATGCAT | 1 cut(s) | 1005 |