Prupe.6G026400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
2087469 .. 2089362
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G026400.1

Sequence Viewer

Length: 1887 bp
ATGCTTTCAACTGTCACTTCCCTCCATCTTCCTCCTCTGAACCACACAGACTCTCACACTCACAGACCCAATTCACAAAACCTCACAACCCATCTTCTCCACAACTTCAGCTCCCCATTAGAGCTCAAACAACTCCATGCCCACCTCATCAAAACCAACACTCCTCTCACTTCCCTCCCTCTCACTCGAATCGCCTTCGTCTGCTCTCTCAATCCCAGTTTCTCTTACGCTCAGAAAATCTTCAAACACCTCGAAAACCCTGAGATTTTGGCGTGGAATTCGTGCTTGAAGGCCTTCGCCGAAGGCAAAGATCCCATTGATGCAGTTATGCTTTTTTATCAGTTGCAGAGTTTTCATGTTTTGCCTGATAGTTTCACTCTGTCTTTTGTTCTAAAGGCGTGTACGCGTTTGTTGGATGTTTCCAATGGTAGAGTTTTGCATGGTTATGTGGAGAAACTTGGGTTTCAGTCGAATTTGTTTTTGATGAATATGATCTTGAATTTGTATGCTTTGTGTGGTGAAGTGCGGGACGCTCGGTTGTTGTTTGATAAAATGTCGCATCGAGATGTCGTGACATGGAATATAATGATGACCCAGTTGGTAAAGAGGGGTGATATTAAGGAAGCCTATGATTTGTTTTCACGGATGCCCAAAAGAAGTGTGAGGTCATGGACTTTGATGATTTCAGGGTTTGTCCAATGCGGGAAACCTAAGGAGGCTATTAGTCTATTTTTGGAGATGGAAGAGGCTGGTGTGAGGCCAAATGAGGTGACTGTAGTGGCTGTTCTTGCGGCTTGTGCTGATTTGGGTGACTTGGGTTTGGGTAGGAGAATTCATGAGTACTCAAACCAAAGCGGGTTTAGCAGAAATGCTCGTATTTCCAACACTTTGATTGAGATGTATGTCAAATGTGGATGCTTGGAGGATGCCTCTACAGTTTTTGATGGGATGAAAGAACGAACGGTTGTGTCATGGTCAGCTATGATTGCAGGGCTTGCCATGCATGGACAAGCTGAGGAAGCTTTGAGACTTTTCTCTAGGATGATTCAGACAGGCATGGATCCGAATGATGTAACCTTTGTTGGACTCTTGCATGCTTGTAGCCACATTGGGTTTGTGGCTCAAGGTCGTGAATTCTTCACCAGCATGACTAATGATTATGGCATAGTTCCTCGAATTGAGCATTATGGTTGTATGGTTGATCTTTTGAGTAGGGCAGGGCTCCTTCAAGAGGCTTATGAGTTTATTACTAACATGCCTATCAAGCCGAATAGCATTGTATGGGGAGCACTGCTTGGTGGATGCAAAGTTCACAGAAACATTGAACTGGCTGAAGAAGCAACAAAGCACCTTTCTGAATTAGATCCACTTAATGATGGATACTATGTGGTTTTGTCAAACATTTATGCAGAAGCACAAAGGTGGGAAGACACAGCGCGAGTGAGAAAGCTAATGAGGGATCGAGGGGTGAAGAAGACACCTGGGTGGAGTTCAATCACAGTAGATGGGGTGATTCATGAGTTTGTTGCTGGGGATGAAGTCCATCCTCAAGCTCAGGAGATCTTCCAAATGTGGGAGAAACTAGTTGTAAAAATGAAGCTGAAGGGTTATGTGCCTAACACTTCAGTTGTTCTGCTAGACATGGAAGAGGATCAGAAGGAAAAATTTCTCTATCGCCATAGCGAGAAATTAGCGCTGGTTTTTGGGTTGATGAACACGGGACCAGGAACACCAATTCGCATTATGAAGAATCTTCGTGTTTGTGAGGACTGCCATGCTGCTTTCAAACTTATATCAGCAATTGTTAATAGAGAGATAGTCGTGCGTGACCGGAACCGCTTCCATTGTTTCAAAGATGGTTCTTGTTCCTGCAGGGATTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

629

Amino Acids

71.12

Weight (kDa)

7.32

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 406, 1438
AciI CCGC 5 cut(s) 526, 702, 791, 855, 1837
AclWI GGATC 6 cut(s) 305, 1055, 1068, 1358, 1467, 1659
AcsI RAATTY 6 cut(s) 277, 472, 499, 831, 1133, 1664
AcuI CTGAAG 4 cut(s) 91, 1353, 1608, 1622
AfaI GTAC 2 cut(s) 403, 842
AfeI AGCGCT 1 cut(s) 1695
AfiI CCNNNNNNNGG 2 cut(s) 1231, 1573
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 9 cut(s) 9, 244, 289, 499, 1229, 1325, 1494, 1786, 1852
AhlI ACTAGT 1 cut(s) 1582
AjnI CCWGG 2 cut(s) 1480, 1723
AleI CACNNNNGTG 2 cut(s) 1420, 1483
AloI GAACNNNNNNTCC 2 cut(s) 1293, 1325
AluBI AGCT 8 cut(s) 111, 124, 980, 1013, 1022, 1450, 1553, 1600
AluI AGCT 8 cut(s) 111, 124, 980, 1013, 1022, 1450, 1553, 1600
Alw21I GWGCWC 2 cut(s) 126, 1291
Alw26I GTCTC 1 cut(s) 1021
AlwI GGATC 6 cut(s) 305, 1055, 1068, 1358, 1467, 1659
Aor51HI AGCGCT 1 cut(s) 1695
AoxI GGCC 2 cut(s) 291, 758
ApeKI GCWGC 1 cut(s) 1778
ApoI RAATTY 6 cut(s) 277, 472, 499, 831, 1133, 1664
Asp700I GAANNNNTTC 4 cut(s) 239, 293, 1665, 1838
AspLEI GCGC 2 cut(s) 1438, 1696
AspS9I GGNCC 1 cut(s) 1721
AsuHPI GGTGA 7 cut(s) 530, 623, 781, 821, 1132, 1480, 1522
AvaII GGWCC 1 cut(s) 1721
AxyI CCTNAGG 1 cut(s) 711
BamHI GGATCC 1 cut(s) 1060
BanII GRGCYC 2 cut(s) 126, 1224
BbsI GAAGAC 2 cut(s) 1434, 1481
Bbv12I GWGCWC 2 cut(s) 126, 1291
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 1 cut(s) 1765
BccI CCATC 8 cut(s) 33, 99, 733, 938, 1370, 1499, 1551, 1850
BciT130I CCWGG 2 cut(s) 1482, 1725
BciVI GTATCC 1 cut(s) 1373
BcoDI GTCTC 1 cut(s) 1021
BcuI ACTAGT 1 cut(s) 1582
BfaI CTAG 3 cut(s) 1038, 1583, 1637
BfmI CTRYAG 3 cut(s) 774, 933, 1870
BfoI RGCGCY 1 cut(s) 1697
BfuI GTATCC 1 cut(s) 1373
BglII AGATCT 1 cut(s) 1560
BisI GCNGC 2 cut(s) 792, 1779
BlsI GCNGC 2 cut(s) 793, 1780
BmcAI AGTACT 1 cut(s) 842
Bme1390I CCNGG 2 cut(s) 1482, 1725
Bme18I GGWCC 1 cut(s) 1721
BmgT120I GGNCC 1 cut(s) 1721
BmiI GGNNCC 4 cut(s) 1062, 1223, 1722, 1835
BmrFI CCNGG 2 cut(s) 1482, 1725
BmrI ACTGGG 2 cut(s) 210, 589
BmsI GCATC 6 cut(s) 310, 568, 636, 905, 916, 1292
BmuI ACTGGG 2 cut(s) 210, 589
BpiI GAAGAC 2 cut(s) 1434, 1481
BplI GAGNNNNNCTC 2 cut(s) 914, 946
Bpu10I CCTNAGC 2 cut(s) 1014, 1554
BpuEI CTTGAG 2 cut(s) 1107, 1533
BsaJI CCNNGG 1 cut(s) 1481
BsaWI WCCGGW 1 cut(s) 1830
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 1231, 1573
Bse1I ACTGG 4 cut(s) 216, 595, 1332, 1886
Bse21I CCTNAGG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 1482, 1725
BseDI CCNNGG 1 cut(s) 1481
BseGI GGATG 9 cut(s) 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543
BseLI CCNNNNNNNGG 2 cut(s) 1231, 1573
BseMII CTCAG 4 cut(s) 245, 252, 1005, 1568
BseNI ACTGG 4 cut(s) 216, 595, 1332, 1886
BseRI GAGGAG 2 cut(s) 24, 153
BseXI GCAGC 1 cut(s) 1765
BseYI CCCAGC 1 cut(s) 1529
Bsh1236I CGCG 2 cut(s) 406, 1438
BshFI GGCC 2 cut(s) 293, 760
BsiHKAI GWGCWC 2 cut(s) 126, 1291
BsiSI CCGG 1 cut(s) 1831
BslFI GGGAC 2 cut(s) 542, 1734
BslI CCNNNNNNNGG 2 cut(s) 1231, 1573
BsmAI GTCTC 1 cut(s) 1021
BsmFI GGGAC 2 cut(s) 542, 1734
BsnI GGCC 2 cut(s) 293, 760
Bsp1286I GDGCHC 3 cut(s) 126, 1224, 1291
Bsp143I GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
BspACI CCGC 5 cut(s) 526, 702, 791, 855, 1837
BspANI GGCC 2 cut(s) 293, 760
BspCNI CTCAG 4 cut(s) 244, 253, 1006, 1567
BspFNI CGCG 2 cut(s) 406, 1438
BspHI TCATGA 2 cut(s) 835, 1516
BspLI GGNNCC 4 cut(s) 1062, 1223, 1722, 1835
BspMAI CTGCAG 1 cut(s) 1874
BspPI GGATC 6 cut(s) 305, 1055, 1068, 1358, 1467, 1659
BsrI ACTGG 4 cut(s) 216, 595, 1332, 1886
BssECI CCNNGG 1 cut(s) 1481
BssMI GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
Bst2UI CCWGG 2 cut(s) 1482, 1725
Bst4CI ACNGT 5 cut(s) 13, 775, 937, 964, 1501
Bst6I CTCTTC 2 cut(s) 738, 1641
BstAPI GCANNNNNTGC 1 cut(s) 995
BstC8I GCNNGC 2 cut(s) 996, 1095
BstDEI CTNAG 5 cut(s) 231, 261, 711, 1014, 1554
BstENI CCTNNNNNAGG 1 cut(s) 1229
BstF5I GGATG 9 cut(s) 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543
BstFNI CGCG 2 cut(s) 406, 1438
BstH2I RGCGCY 1 cut(s) 1697
BstHHI GCGC 2 cut(s) 1438, 1696
BstKTI GATC 8 cut(s) 313, 495, 1063, 1204, 1366, 1462, 1563, 1654
BstMAI GTCTC 1 cut(s) 1021
BstMBI GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
BstMWI GCNNNNNNNGC 9 cut(s) 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337
BstNI CCWGG 2 cut(s) 1482, 1725
BstNSI RCATGY 2 cut(s) 1097, 1258
BstSCI CCNGG 2 cut(s) 1480, 1723
BstSFI CTRYAG 3 cut(s) 774, 933, 1870
BstUI CGCG 2 cut(s) 406, 1438
BstV1I GCAGC 1 cut(s) 1765
BstV2I GAAGAC 2 cut(s) 1434, 1481
BstX2I RGATCY 4 cut(s) 310, 1060, 1363, 1560
BstYI RGATCY 4 cut(s) 310, 1060, 1363, 1560
Bsu36I CCTNAGG 1 cut(s) 711
BsuI GTATCC 1 cut(s) 1373
BsuRI GGCC 2 cut(s) 293, 760
BtsCI GGATG 9 cut(s) 421, 651, 920, 931, 954, 1047, 1307, 1540, 1543
BtsI GCAGTG 1 cut(s) 1289
BtsIMutI CAGTG 1 cut(s) 1289
Cac8I GCNNGC 2 cut(s) 996, 1095
CciI TCATGA 2 cut(s) 835, 1516
CfoI GCGC 2 cut(s) 1438, 1696
Cfr13I GGNCC 1 cut(s) 1721
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 402, 841
CviQI GTAC 2 cut(s) 402, 841
DdeI CTNAG 5 cut(s) 231, 261, 711, 1014, 1554
DpnI GATC 8 cut(s) 312, 494, 1062, 1203, 1365, 1461, 1562, 1653
DpnII GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
Eam1104I CTCTTC 2 cut(s) 738, 1641
EarI CTCTTC 2 cut(s) 738, 1641
Ecl136II GAGCTC 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 2 cut(s) 126, 1224
Eco47I GGWCC 1 cut(s) 1721
Eco47III AGCGCT 1 cut(s) 1695
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 4 cut(s) 91, 1353, 1608, 1622
Eco81I CCTNAGG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 1229
EcoRI GAATTC 3 cut(s) 277, 831, 1133
EcoRII CCWGG 2 cut(s) 1480, 1723
EcoT22I ATGCAT 1 cut(s) 1005
EcoT38I GRGCYC 2 cut(s) 126, 1224
FaqI GGGAC 2 cut(s) 542, 1734
FauI CCCGC 3 cut(s) 519, 695, 848
Fnu4HI GCNGC 2 cut(s) 792, 1779
FokI GGATG 9 cut(s) 428, 658, 927, 938, 961, 1054, 1314, 1530, 1547
FriOI GRGCYC 2 cut(s) 126, 1224
Fsp4HI GCNGC 2 cut(s) 792, 1779
FspBI CTAG 3 cut(s) 1038, 1583, 1637
GlaI GCGC 2 cut(s) 1437, 1695
GluI GCNGC 2 cut(s) 792, 1779
GsaI CCCAGC 1 cut(s) 1533
HaeII RGCGCY 1 cut(s) 1697
HaeIII GGCC 2 cut(s) 293, 760
HapII CCGG 1 cut(s) 1831
HgaI GACGC 1 cut(s) 539
HhaI GCGC 2 cut(s) 1438, 1696
Hin6I GCGC 2 cut(s) 1436, 1694
HinP1I GCGC 2 cut(s) 1436, 1694
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 6 cut(s) 50, 189, 1045, 1086, 1513, 1750
HpaII CCGG 1 cut(s) 1831
HphI GGTGA 7 cut(s) 530, 623, 781, 821, 1132, 1480, 1522
Hpy166II GTNNAC 2 cut(s) 402, 1312
Hpy188I TCNGA 6 cut(s) 39, 234, 1050, 1065, 1357, 1656
Hpy188III TCNNGA 8 cut(s) 496, 563, 571, 836, 1130, 1229, 1517, 1556
Hpy8I GTNNAC 2 cut(s) 402, 1312
HpyAV CCTTC 7 cut(s) 205, 283, 296, 304, 1235, 1597, 1651
HpyCH4III ACNGT 5 cut(s) 13, 775, 937, 964, 1501
HpyCH4V TGCA 9 cut(s) 323, 346, 439, 989, 1003, 1093, 1305, 1409, 1872
HpyF10VI GCNNNNNNNGC 9 cut(s) 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337
HpyF3I CTNAG 5 cut(s) 231, 261, 711, 1014, 1554
HspAI GCGC 2 cut(s) 1436, 1694
Kzo9I GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
LmnI GCTCC 3 cut(s) 116, 1227, 1286
Lsp1109I GCAGC 1 cut(s) 1765
LweI GCATC 6 cut(s) 310, 568, 636, 905, 916, 1292
MaeI CTAG 3 cut(s) 1038, 1583, 1637
MaeIII GTNAC 6 cut(s) 13, 571, 769, 809, 1072, 1826
MalI GATC 8 cut(s) 312, 494, 1062, 1203, 1365, 1461, 1562, 1653
MboI GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
MfeI CAATTG 1 cut(s) 1800
MflI RGATCY 4 cut(s) 310, 1060, 1363, 1560
MhlI GDGCHC 3 cut(s) 126, 1224, 1291
MluI ACGCGT 1 cut(s) 404
MlyI GAGTC 2 cut(s) 44, 1080
MmeI TCCRAC 3 cut(s) 393, 906, 1063
Mph1103I ATGCAT 1 cut(s) 1005
MroXI GAANNNNTTC 4 cut(s) 239, 293, 1665, 1838
MseI TTAA 3 cut(s) 618, 1371, 1806
MslI CAYNNNNRTG 5 cut(s) 444, 564, 1145, 1420, 1483
MspI CCGG 1 cut(s) 1831
MspR9I CCNGG 2 cut(s) 1482, 1725
MunI CAATTG 1 cut(s) 1800
MvaI CCWGG 2 cut(s) 1482, 1725
MvnI CGCG 2 cut(s) 406, 1438
MwoI GCNNNNNNNGC 9 cut(s) 788, 797, 861, 986, 995, 1000, 1019, 1264, 1337
NdeII GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
NlaIV GGNNCC 4 cut(s) 1062, 1223, 1722, 1835
NmuCI GTSAC 5 cut(s) 13, 571, 769, 809, 1826
NsiI ATGCAT 1 cut(s) 1005
NspI RCATGY 2 cut(s) 1097, 1258
OliI CACNNNNGTG 2 cut(s) 1420, 1483
PaeI GCATGC 1 cut(s) 1097
PagI TCATGA 2 cut(s) 835, 1516
PceI AGGCCT 1 cut(s) 293
PdmI GAANNNNTTC 4 cut(s) 239, 293, 1665, 1838
PfeI GAWTC 4 cut(s) 189, 1045, 1513, 1750
PkrI GCNGC 2 cut(s) 793, 1780
PleI GAGTC 2 cut(s) 44, 1080
PpsI GAGTC 2 cut(s) 44, 1080
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 1480, 1723
PspFI CCCAGC 1 cut(s) 1529
PspGI CCWGG 2 cut(s) 1480, 1723
PspN4I GGNNCC 4 cut(s) 1062, 1223, 1722, 1835
PspPI GGNCC 1 cut(s) 1721
PsrI GAACNNNNNNTAC 2 cut(s) 768, 800
PstI CTGCAG 1 cut(s) 1874
PsuI RGATCY 4 cut(s) 310, 1060, 1363, 1560
RsaI GTAC 2 cut(s) 403, 842
RsaNI GTAC 2 cut(s) 402, 841
RseI CAYNNNNRTG 5 cut(s) 444, 564, 1145, 1420, 1483
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 618, 1371, 1806
SatI GCNGC 2 cut(s) 792, 1779
Sau3AI GATC 8 cut(s) 310, 492, 1060, 1201, 1363, 1459, 1560, 1651
Sau96I GGNCC 1 cut(s) 1721
SbfI CCTGCAGG 1 cut(s) 1874
ScaI AGTACT 1 cut(s) 842
SchI GAGTC 2 cut(s) 44, 1080
ScrFI CCNGG 2 cut(s) 1482, 1725
SdaI CCTGCAGG 1 cut(s) 1874
SduI GDGCHC 3 cut(s) 126, 1224, 1291
SfaNI GCATC 6 cut(s) 310, 568, 636, 905, 916, 1292
SfcI CTRYAG 3 cut(s) 774, 933, 1870
SinI GGWCC 1 cut(s) 1721
SmiMI CAYNNNNRTG 5 cut(s) 444, 564, 1145, 1420, 1483
SmlI CTYRAG 2 cut(s) 1122, 1548
SmoI CTYRAG 2 cut(s) 1122, 1548
SpeI ACTAGT 1 cut(s) 1582
SphI GCATGC 1 cut(s) 1097
Sse8387I CCTGCAGG 1 cut(s) 1874
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 5 cut(s) 526, 702, 791, 855, 1837
SspMI CTAG 3 cut(s) 1038, 1583, 1637
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 1480, 1723
TaaI ACNGT 5 cut(s) 13, 775, 937, 964, 1501
TaqI TCGA 6 cut(s) 187, 252, 470, 562, 1174, 1462
TatI WGTACW 1 cut(s) 840
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 4 cut(s) 189, 1045, 1513, 1750
Tru1I TTAA 3 cut(s) 618, 1371, 1806
Tru9I TTAA 3 cut(s) 618, 1371, 1806
TscAI CASTG 1 cut(s) 1296
TseFI GTSAC 5 cut(s) 13, 571, 769, 809, 1826
TseI GCWGC 1 cut(s) 1778
Tsp45I GTSAC 5 cut(s) 13, 571, 769, 809, 1826
TspDTI ATGAA 9 cut(s) 344, 500, 824, 965, 1505, 1551, 1610, 1727, 1760
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 1 cut(s) 1296
VpaK11BI GGWCC 1 cut(s) 1721
XagI CCTNNNNNAGG 1 cut(s) 1229
XapI RAATTY 6 cut(s) 277, 472, 499, 831, 1133, 1664
XceI RCATGY 2 cut(s) 1097, 1258
XmnI GAANNNNTTC 4 cut(s) 239, 293, 1665, 1838
XspI CTAG 3 cut(s) 1038, 1583, 1637
ZrmI AGTACT 1 cut(s) 842
Zsp2I ATGCAT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.