Rh5CG547300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007750
Physical Location & Seq
Forward (+)
76354783 .. 76356663
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG547300.1

Sequence Viewer

Length: 1881 bp
ATGCTTTCAACACTTTCCCTCCATCTTCCTCCTCTGAACCACACGCAGTCCCCAACTTCACAAAACCTCACACCCCATCATCATCATCTTCTCCACACCTTCACCTCCCCATTTGAGCTCAAACAACTCCATGCCCACCTCATCAAAACCAACACTCCCCTCTCCACCCTCCCTCCCACCCGAATCGCCTTCGCCTGCTCTCTCACTCCCACCTTCTCCTACGCCCAGAAACTCTTCCAACACCTCGAATACCCCGATATCCCTGCCTGGAATTCCTGCCTGAAGGCCTTCGCCGAAGGCGATGAGCCCGTTGATGCAATGCTGCTCTTCCATCAGCTGCGTTGCTTCAATGTAATTCCTGACAGTTTCACTCTGTCTTTTGTTCTAAAGGCCTGTACCCGCTTGTTGGATTTTCACACTGGTAGAGTGCTACATGGCTATGTGGAGAAGCTTGGGTTTCGGTCCAATCTGTTTTTGATGAATATGATTCTGAATTTGTATGCATTGTGTGGCGAAATTAGGGATGCACGGCTGATGTTTGATAAAATGCCGCAGAGGGATGTTGTCACGTGGAATATAATGATGACTCTGTTGGTGAAGAGAGGTGATATAGAGCAAGCTTATGATTTGTTTTCGGGGATGCCAGATAGAAGTGTGAGGTCGTGGACGCTGATGATTTCGGGGTTTGGTCAGTGCGGTAAGCCTAAGGAGGCGATTCGTGTGTTTTTGGAGATGGAGGAGGCTGGTGTGAGGGCAAATGAGGTGACTGTAGTGGCGGTTCTTGCGGCTTGTGCTGATTTGGGTGACTTGGATTTGGGTAGGAGAGTTCATGAGTACTCGAAGGAAAGTGGGTTTGGAAGAAATGTTTGGATTTGTAACACGCTGATCGAGATGTATGTCAAATGTGGGTGTTTGGAGGATGCTTGTAGAGTTTTTGATGCGCTGGAAGAACGAACGGTTGTGTCGTGGTCAGCTATGATTTCAGGGCTGGCCATGCATGGACAAGCTGAGGAAGCTTTGAGACTTTTCTCTAACATGATTCAGATAGGGATGGAGCCAAATTATGTAACTTTTGTTGGACTCCTGCATGCTTGTAGCCACATGGGGTTTGTTGACAAGGGTCGTGAGTTCTTCGCCAGAATGACTGCAGATTATGGTATAGTTCCGAAAATTGAGCATTATGGTTGTATGGTTGATCTCTTAAGCCGCGCAGGGCTCCTTCAAGAGGCTCACGAGTTTATCATGAACATGCCTATCAAACCAAATGGTGTTGTGTGGGGAGCTCTCCTTGGTGGATGCAAAGTTCACAGAAACATTGAACTGGCTGAAGAAGCAACAAAGCACCTTTCTGAATTGGATCCACTGAATGATGGATACTACATTGTTTTGTCAAACATTTATGCAGAAGCACAACGGTGGGAAGACGTGGCGAGAGTGAGAAGACTAATGAGGGATCGAGGAGTGAAGAAGACACCTGGCTGGAGCTCAATCACGGTAGATGGAGTGCTTCATGAGTTTGTTGCTGGGGATGAAGCCCATCCTCAAGCCAAGGAGATCGACCAAATATGGGAGAAACTACTTGAAGGAATGAAGATGAAGGGTTATGTACCCAACACTTCAGTTGTTCTACTAGACATGGAAGAGGATCAAAAGGAGAAATTTCTCAATCGCCATAGCGAGAAATTAGCGCTGGTTTTTGGGCTGATCAAAACGAAACCTGGAACACCAATTCGAATTATGAAGAATCTTCGTGTTTGTGAGGACTGTCATGCTGCTTTGAAACTTGTATCAGAAATTGCCGACAGAGAGATAGTTGTGCGTGACCGAAATCGGTTCCATTGTTTCAAAAAAGGTTATTGTTCCTGCAGGGATTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

626

Amino Acids

71.17

Weight (kDa)

6.52

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 186 - 219 8.7e-08 PPR repeat family
PPR_2 PF13041 218 - 265 1.1e-08 PPR repeat family
PPR PF01535 221 - 250 3.4e-08 PPR repeat
PPR_2 PF13041 319 - 366 2.1e-10 PPR repeat family
PPR PF01535 321 - 350 5.6e-07 PPR repeat
E_motif PF20431 436 - 497 5.1e-22 E motif
DYW_deaminase PF14432 534 - 626 2.5e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1209
AciI CCGC 6 cut(s) 400, 551, 696, 776, 785, 1207
AclWI GGATC 4 cut(s) 1352, 1365, 1461, 1653
AcoI YGGCCR 1 cut(s) 990
AcsI RAATTY 3 cut(s) 271, 493, 1658
AcuI CTGAAG 3 cut(s) 302, 1347, 1602
AcvI CACGTG 1 cut(s) 570
AfaI GTAC 3 cut(s) 397, 836, 1608
AfeI AGCGCT 1 cut(s) 1689
AfiI CCNNNNNNNGG 3 cut(s) 406, 1225, 1567
AflII CTTAAG 1 cut(s) 1201
AgsI TTSAA 7 cut(s) 9, 349, 1223, 1319, 1583, 1780, 1846
AjiI CACGTC 1 cut(s) 1426
AjnI CCWGG 3 cut(s) 266, 1474, 1717
AjuI GAANNNNNNNTTGG 4 cut(s) 837, 850, 869, 882
AleI CACNNNNGTG 1 cut(s) 1414
AloI GAACNNNNNNTCC 2 cut(s) 1287, 1319
AluBI AGCT 9 cut(s) 118, 337, 451, 620, 974, 1007, 1016, 1283, 1485
AluI AGCT 9 cut(s) 118, 337, 451, 620, 974, 1007, 1016, 1283, 1485
Alw21I GWGCWC 3 cut(s) 120, 1285, 1487
Alw26I GTCTC 1 cut(s) 1015
AlwI GGATC 4 cut(s) 1352, 1365, 1461, 1653
Aor51HI AGCGCT 1 cut(s) 1689
AoxI GGCC 3 cut(s) 285, 390, 990
ApeKI GCWGC 3 cut(s) 322, 337, 1772
ApoI RAATTY 3 cut(s) 271, 493, 1658
Asp700I GAANNNNTTC 2 cut(s) 233, 287
AspLEI GCGC 3 cut(s) 943, 1211, 1690
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 5 cut(s) 94, 607, 617, 775, 815
AsuII TTCGAA 1 cut(s) 1732
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 705
BalI TGGCCA 1 cut(s) 992
BamHI GGATCC 1 cut(s) 1357
BanII GRGCYC 5 cut(s) 120, 309, 1218, 1285, 1487
BauI CACGAG 1 cut(s) 1232
BbrPI CACGTG 1 cut(s) 570
BbsI GAAGAC 3 cut(s) 1428, 1447, 1475
Bbv12I GWGCWC 3 cut(s) 120, 1285, 1487
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 3 cut(s) 309, 324, 1759
BccI CCATC 8 cut(s) 30, 84, 339, 727, 1045, 1364, 1493, 1545
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 3 cut(s) 268, 1476, 1719
BciVI GTATCC 1 cut(s) 1367
BclI TGATCA 1 cut(s) 1704
BcoDI GTCTC 1 cut(s) 1015
BfaI CTAG 1 cut(s) 1631
BfmI CTRYAG 3 cut(s) 768, 1146, 1864
BfoI RGCGCY 1 cut(s) 1691
BfrI CTTAAG 1 cut(s) 1201
BfuI GTATCC 1 cut(s) 1367
BisI GCNGC 6 cut(s) 323, 338, 551, 786, 1207, 1773
BlsI GCNGC 6 cut(s) 324, 339, 552, 787, 1208, 1774
BmcAI AGTACT 1 cut(s) 836
Bme1390I CCNGG 3 cut(s) 268, 1476, 1719
Bme18I GGWCC 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 1426
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 4 cut(s) 1056, 1217, 1359, 1835
BmrFI CCNGG 3 cut(s) 268, 1476, 1719
BmsI GCATC 6 cut(s) 304, 514, 630, 910, 928, 1286
BoxI GACNNNNGTC 1 cut(s) 1119
BpiI GAAGAC 3 cut(s) 1428, 1447, 1475
BpmI CTGGAG 1 cut(s) 1501
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 1732
BpuEI CTTGAG 1 cut(s) 1527
BsaAI YACGTR 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 1288, 1548
BsaXI ACNNNNNCTCC 5 cut(s) 33, 139, 157, 169, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 1225, 1567
Bse1I ACTGG 3 cut(s) 424, 1326, 1880
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 3 cut(s) 268, 1476, 1719
BseDI CCNNGG 2 cut(s) 1288, 1548
BseGI GGATG 8 cut(s) 529, 565, 645, 925, 1056, 1301, 1534, 1537
BseLI CCNNNNNNNGG 3 cut(s) 406, 1225, 1567
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 999
BseNI ACTGG 3 cut(s) 424, 1326, 1880
BseRI GAGGAG 3 cut(s) 21, 752, 1473
BseXI GCAGC 3 cut(s) 309, 324, 1759
BseYI CCCAGC 1 cut(s) 1523
Bsh1236I CGCG 1 cut(s) 1209
BshFI GGCC 3 cut(s) 287, 392, 992
BsiHKAI GWGCWC 3 cut(s) 120, 1285, 1487
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 406, 1225, 1567
BsmAI GTCTC 1 cut(s) 1015
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 3 cut(s) 287, 392, 992
Bsp119I TTCGAA 1 cut(s) 1732
Bsp1286I GDGCHC 5 cut(s) 120, 309, 1218, 1285, 1487
Bsp143I GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
BspACI CCGC 6 cut(s) 400, 551, 696, 776, 785, 1207
BspANI GGCC 3 cut(s) 287, 392, 992
BspCNI CTCAG 1 cut(s) 1000
BspFNI CGCG 1 cut(s) 1209
BspHI TCATGA 3 cut(s) 829, 1242, 1510
BspLI GGNNCC 4 cut(s) 1056, 1217, 1359, 1835
BspMAI CTGCAG 2 cut(s) 1150, 1868
BspPI GGATC 4 cut(s) 1352, 1365, 1461, 1653
BspQI GCTCTTC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 1732
BspTI CTTAAG 1 cut(s) 1201
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 424, 1326, 1880
BssECI CCNNGG 2 cut(s) 1288, 1548
BssMI GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
BssSI CACGAG 1 cut(s) 1232
BssT1I CCWWGG 2 cut(s) 1288, 1548
Bst2BI CACGAG 1 cut(s) 1232
Bst2UI CCWGG 3 cut(s) 268, 1476, 1719
Bst4CI ACNGT 6 cut(s) 365, 769, 958, 1416, 1495, 1766
Bst6I CTCTTC 4 cut(s) 239, 332, 593, 1635
BstAFI CTTAAG 1 cut(s) 1201
BstBAI YACGTR 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 1732
BstC8I GCNNGC 4 cut(s) 196, 618, 990, 1089
BstDEI CTNAG 2 cut(s) 705, 1008
BstENI CCTNNNNNAGG 1 cut(s) 1223
BstF5I GGATG 8 cut(s) 529, 565, 645, 925, 1056, 1301, 1534, 1537
BstFNI CGCG 1 cut(s) 1209
BstH2I RGCGCY 1 cut(s) 1691
BstHHI GCGC 3 cut(s) 943, 1211, 1690
BstKTI GATC 7 cut(s) 888, 1198, 1360, 1456, 1557, 1648, 1707
BstMAI GTCTC 1 cut(s) 1015
BstMBI GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
BstMWI GCNNNNNNNGC 5 cut(s) 782, 791, 994, 1013, 1331
BstNI CCWGG 3 cut(s) 268, 1476, 1719
BstNSI RCATGY 2 cut(s) 1091, 1252
BstPAI GACNNNNGTC 1 cut(s) 1119
BstSCI CCNGG 3 cut(s) 266, 1474, 1717
BstSFI CTRYAG 3 cut(s) 768, 1146, 1864
BstUI CGCG 1 cut(s) 1209
BstV1I GCAGC 3 cut(s) 309, 324, 1759
BstV2I GAAGAC 3 cut(s) 1428, 1447, 1475
BstX2I RGATCY 1 cut(s) 1357
BstYI RGATCY 1 cut(s) 1357
Bsu36I CCTNAGG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 1367
BsuRI GGCC 3 cut(s) 287, 392, 992
BtgZI GCGATG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 1426
BtsCI GGATG 8 cut(s) 529, 565, 645, 925, 1056, 1301, 1534, 1537
BtsIMutI CAGTG 3 cut(s) 417, 698, 1361
Cac8I GCNNGC 4 cut(s) 196, 618, 990, 1089
CciI TCATGA 3 cut(s) 829, 1242, 1510
CfoI GCGC 3 cut(s) 943, 1211, 1690
Cfr13I GGNCC 1 cut(s) 462
CseI GACGC 1 cut(s) 676
Csp6I GTAC 3 cut(s) 396, 835, 1607
CviQI GTAC 3 cut(s) 396, 835, 1607
DdeI CTNAG 2 cut(s) 705, 1008
DpnI GATC 7 cut(s) 887, 1197, 1359, 1455, 1556, 1647, 1706
DpnII GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
EaeI YGGCCR 1 cut(s) 990
Eam1104I CTCTTC 4 cut(s) 239, 332, 593, 1635
EarI CTCTTC 4 cut(s) 239, 332, 593, 1635
Ecl136II GAGCTC 3 cut(s) 118, 1283, 1485
Eco130I CCWWGG 2 cut(s) 1288, 1548
Eco147I AGGCCT 2 cut(s) 287, 392
Eco24I GRGCYC 5 cut(s) 120, 309, 1218, 1285, 1487
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 462
Eco47III AGCGCT 1 cut(s) 1689
Eco53kI GAGCTC 3 cut(s) 118, 1283, 1485
Eco57I CTGAAG 3 cut(s) 302, 1347, 1602
Eco72I CACGTG 1 cut(s) 570
Eco81I CCTNAGG 1 cut(s) 705
EcoICRI GAGCTC 3 cut(s) 118, 1283, 1485
EcoNI CCTNNNNNAGG 1 cut(s) 1223
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 3 cut(s) 266, 1474, 1717
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 1288, 1548
EcoT22I ATGCAT 2 cut(s) 505, 999
EcoT38I GRGCYC 5 cut(s) 120, 309, 1218, 1285, 1487
ErhI CCWWGG 2 cut(s) 1288, 1548
FaqI GGGAC 1 cut(s) 34
FauI CCCGC 1 cut(s) 407
FbaI TGATCA 1 cut(s) 1704
Fnu4HI GCNGC 6 cut(s) 323, 338, 551, 786, 1207, 1773
FokI GGATG 8 cut(s) 536, 572, 652, 932, 1063, 1308, 1524, 1541
FriOI GRGCYC 5 cut(s) 120, 309, 1218, 1285, 1487
Fsp4HI GCNGC 6 cut(s) 323, 338, 551, 786, 1207, 1773
FspBI CTAG 1 cut(s) 1631
GlaI GCGC 3 cut(s) 942, 1210, 1689
GluI GCNGC 6 cut(s) 323, 338, 551, 786, 1207, 1773
GsaI CCCAGC 1 cut(s) 1527
GsuI CTGGAG 1 cut(s) 1501
HaeII RGCGCY 1 cut(s) 1691
HaeIII GGCC 3 cut(s) 287, 392, 992
HgaI GACGC 1 cut(s) 676
HhaI GCGC 3 cut(s) 943, 1211, 1690
Hin6I GCGC 3 cut(s) 941, 1209, 1688
HinP1I GCGC 3 cut(s) 941, 1209, 1688
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 3 cut(s) 449, 618, 1014
HinfI GANTC 7 cut(s) 183, 487, 586, 715, 1039, 1080, 1744
HphI GGTGA 5 cut(s) 94, 607, 617, 775, 815
Hpy166II GTNNAC 3 cut(s) 666, 1114, 1306
Hpy188I TCNGA 6 cut(s) 36, 492, 1044, 1167, 1351, 1792
Hpy188III TCNNGA 8 cut(s) 359, 830, 889, 1124, 1223, 1232, 1243, 1511
Hpy8I GTNNAC 3 cut(s) 666, 1114, 1306
HpyCH4III ACNGT 6 cut(s) 365, 769, 958, 1416, 1495, 1766
HpyCH4IV ACGT 2 cut(s) 569, 1425
HpyCH4V TGCA 9 cut(s) 317, 503, 527, 997, 1087, 1148, 1299, 1403, 1866
HpyF10VI GCNNNNNNNGC 5 cut(s) 782, 791, 994, 1013, 1331
HpyF3I CTNAG 2 cut(s) 705, 1008
HpySE526I ACGT 2 cut(s) 569, 1425
HspAI GCGC 3 cut(s) 941, 1209, 1688
Ksp22I TGATCA 1 cut(s) 1704
Kzo9I GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 4 cut(s) 1054, 1221, 1280, 1482
Lsp1109I GCAGC 3 cut(s) 309, 324, 1759
LweI GCATC 6 cut(s) 304, 514, 630, 910, 928, 1286
MaeI CTAG 1 cut(s) 1631
MaeII ACGT 2 cut(s) 569, 1425
MaeIII GTNAC 6 cut(s) 565, 763, 803, 875, 1066, 1820
MalI GATC 7 cut(s) 887, 1197, 1359, 1455, 1556, 1647, 1706
MboI GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
MflI RGATCY 1 cut(s) 1357
MhlI GDGCHC 5 cut(s) 120, 309, 1218, 1285, 1487
MlsI TGGCCA 1 cut(s) 992
MluNI TGGCCA 1 cut(s) 992
MlyI GAGTC 2 cut(s) 580, 1074
MmeI TCCRAC 3 cut(s) 262, 387, 1057
Mox20I TGGCCA 1 cut(s) 992
Mph1103I ATGCAT 2 cut(s) 505, 999
MroXI GAANNNNTTC 2 cut(s) 233, 287
MscI TGGCCA 1 cut(s) 992
MseI TTAA 1 cut(s) 1202
MslI CAYNNNNRTG 3 cut(s) 438, 1247, 1414
Msp20I TGGCCA 1 cut(s) 992
MspA1I CMGCKG 1 cut(s) 337
MspCI CTTAAG 1 cut(s) 1201
MspR9I CCNGG 3 cut(s) 268, 1476, 1719
MvaI CCWGG 3 cut(s) 268, 1476, 1719
MvnI CGCG 1 cut(s) 1209
MwoI GCNNNNNNNGC 5 cut(s) 782, 791, 994, 1013, 1331
NdeII GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
NlaIV GGNNCC 4 cut(s) 1056, 1217, 1359, 1835
NmuCI GTSAC 4 cut(s) 565, 763, 803, 1820
NsiI ATGCAT 2 cut(s) 505, 999
NspI RCATGY 2 cut(s) 1091, 1252
NspV TTCGAA 1 cut(s) 1732
OliI CACNNNNGTG 1 cut(s) 1414
PaeI GCATGC 1 cut(s) 1091
PagI TCATGA 3 cut(s) 829, 1242, 1510
PceI AGGCCT 2 cut(s) 287, 392
PciSI GCTCTTC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 3 cut(s) 252, 297, 962
PdmI GAANNNNTTC 2 cut(s) 233, 287
PfeI GAWTC 5 cut(s) 183, 487, 715, 1039, 1744
PkrI GCNGC 6 cut(s) 324, 339, 552, 787, 1208, 1774
PleI GAGTC 2 cut(s) 580, 1074
PmaCI CACGTG 1 cut(s) 570
PmlI CACGTG 1 cut(s) 570
PpsI GAGTC 2 cut(s) 580, 1074
Ppu21I YACGTR 1 cut(s) 570
PshAI GACNNNNGTC 1 cut(s) 1119
Psp124BI GAGCTC 3 cut(s) 120, 1285, 1487
Psp6I CCWGG 3 cut(s) 266, 1474, 1717
PspCI CACGTG 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 1523
PspGI CCWGG 3 cut(s) 266, 1474, 1717
PspN4I GGNNCC 4 cut(s) 1056, 1217, 1359, 1835
PspPI GGNCC 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 762, 794
PstI CTGCAG 2 cut(s) 1150, 1868
PsuI RGATCY 1 cut(s) 1357
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 3 cut(s) 397, 836, 1608
RsaNI GTAC 3 cut(s) 396, 835, 1607
RseI CAYNNNNRTG 3 cut(s) 438, 1247, 1414
SacI GAGCTC 3 cut(s) 120, 1285, 1487
SapI GCTCTTC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 1202
SatI GCNGC 6 cut(s) 323, 338, 551, 786, 1207, 1773
Sau3AI GATC 7 cut(s) 885, 1195, 1357, 1453, 1554, 1645, 1704
Sau96I GGNCC 1 cut(s) 462
SbfI CCTGCAGG 1 cut(s) 1868
ScaI AGTACT 1 cut(s) 836
SchI GAGTC 2 cut(s) 580, 1074
ScrFI CCNGG 3 cut(s) 268, 1476, 1719
SdaI CCTGCAGG 1 cut(s) 1868
SduI GDGCHC 5 cut(s) 120, 309, 1218, 1285, 1487
SfaNI GCATC 6 cut(s) 304, 514, 630, 910, 928, 1286
SfcI CTRYAG 3 cut(s) 768, 1146, 1864
SfuI TTCGAA 1 cut(s) 1732
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 3 cut(s) 438, 1247, 1414
SmlI CTYRAG 2 cut(s) 1201, 1542
SmoI CTYRAG 2 cut(s) 1201, 1542
SphI GCATGC 1 cut(s) 1091
Sse8387I CCTGCAGG 1 cut(s) 1868
SseBI AGGCCT 2 cut(s) 287, 392
SsiI CCGC 6 cut(s) 400, 551, 696, 776, 785, 1207
SspMI CTAG 1 cut(s) 1631
SstI GAGCTC 3 cut(s) 120, 1285, 1487
StuI AGGCCT 2 cut(s) 287, 392
StyD4I CCNGG 3 cut(s) 266, 1474, 1717
StyI CCWWGG 2 cut(s) 1288, 1548
TaaI ACNGT 6 cut(s) 365, 769, 958, 1416, 1495, 1766
TaiI ACGT 2 cut(s) 572, 1428
TaqI TCGA 6 cut(s) 246, 839, 888, 1456, 1557, 1732
TaqII GACCGA 2 cut(s) 450, 1839
TatI WGTACW 1 cut(s) 834
TauI GCSGC 3 cut(s) 553, 788, 1209
TfiI GAWTC 5 cut(s) 183, 487, 715, 1039, 1744
Tru1I TTAA 1 cut(s) 1202
Tru9I TTAA 1 cut(s) 1202
TscAI CASTG 3 cut(s) 424, 698, 1368
TseFI GTSAC 4 cut(s) 565, 763, 803, 1820
TseI GCWGC 3 cut(s) 322, 337, 1772
Tsp45I GTSAC 4 cut(s) 565, 763, 803, 1820
TspDTI ATGAA 8 cut(s) 494, 818, 1259, 1499, 1545, 1604, 1610, 1754
TspRI CASTG 3 cut(s) 424, 698, 1368
Vha464I CTTAAG 1 cut(s) 1201
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 1223
XapI RAATTY 3 cut(s) 271, 493, 1658
XceI RCATGY 2 cut(s) 1091, 1252
XmnI GAANNNNTTC 2 cut(s) 233, 287
XspI CTAG 1 cut(s) 1631
ZrmI AGTACT 1 cut(s) 836
Zsp2I ATGCAT 2 cut(s) 505, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.